diff test-data/output1_gff_matches.gff3 @ 0:95ea8d97abb4 draft

planemo upload for repository https://github.com/ogotoh/spaln commit af52c6b4c904f6291953881111d415d5b86ee4d6
author iuc
date Fri, 11 Jan 2019 18:15:21 -0500
parents
children 37b5e1f0b544
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output1_gff_matches.gff3	Fri Jan 11 18:15:21 2019 -0500
@@ -0,0 +1,45 @@
+##gff-version	3
+##sequence-region	scaffold_1 1 59940
+scaffold_1	ALN	nucleotide_to_protein_match	234	264	71	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 1 10 +;Gap=M10 
+scaffold_1	ALN	nucleotide_to_protein_match	305	334	-9	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 11 27 +;Gap=M2 D1 M5 I8 M2 
+scaffold_1	ALN	nucleotide_to_protein_match	418	542	226	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 28 69 +;Gap=M42 
+scaffold_1	ALN	nucleotide_to_protein_match	2156	2164	37	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 70 72 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	2821	2829	32	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 73 75 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	7145	7250	176	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 76 110 +;Gap=M35 
+scaffold_1	ALN	nucleotide_to_protein_match	7659	7662	22	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 111 112 +;Gap=M2 
+scaffold_1	ALN	nucleotide_to_protein_match	7738	7746	4	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 113 114 +;Gap=D1 M2 
+scaffold_1	ALN	nucleotide_to_protein_match	7860	7864	24	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 115 115 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	8250	8286	15	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 116 125 +;Gap=M10 D3 
+scaffold_1	ALN	nucleotide_to_protein_match	8348	8355	28	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 126 127 +;Gap=M2 
+scaffold_1	ALN	nucleotide_to_protein_match	8419	8436	26	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 128 133 +;Gap=M6 
+scaffold_1	ALN	nucleotide_to_protein_match	8581	8592	29	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 134 137 +;Gap=M4 
+scaffold_1	ALN	nucleotide_to_protein_match	8866	8883	29	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 138 143 +;Gap=M6 
+scaffold_1	ALN	nucleotide_to_protein_match	8980	8988	28	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 144 146 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	9383	9386	33	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 147 148 +;Gap=M2 
+scaffold_1	ALN	nucleotide_to_protein_match	9959	9988	21	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 149 154 +;Gap=D4 M6 
+scaffold_1	ALN	nucleotide_to_protein_match	15714	15731	43	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 155 160 +;Gap=M6 
+scaffold_1	ALN	nucleotide_to_protein_match	15783	15790	19	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 161 162 +;Gap=M2 
+scaffold_1	ALN	nucleotide_to_protein_match	15849	15851	17	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 163 163 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	16745	16746	20	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 164 164 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	16948	16950	27	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 165 165 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	17082	17096	13	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 166 166 +;Gap=M1 D4 
+scaffold_1	ALN	nucleotide_to_protein_match	17349	17354	28	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 167 167 +;Gap=D1 M1 
+scaffold_1	ALN	nucleotide_to_protein_match	17425	17434	15	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 168 170 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	18352	18358	24	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 171 173 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	18738	18742	17	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 174 174 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	19505	19511	32	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 175 177 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	19599	19612	16	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 178 181 +;Gap=M4 
+scaffold_1	ALN	nucleotide_to_protein_match	19677	19678	17	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 182 182 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	20611	20621	30	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 183 184 +;Gap=M2 D2 
+scaffold_1	ALN	nucleotide_to_protein_match	22447	22466	27	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 185 188 +;Gap=D2 M4 
+scaffold_1	ALN	nucleotide_to_protein_match	22674	22685	31	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 189 192 +;Gap=M4 
+scaffold_1	ALN	nucleotide_to_protein_match	26126	26137	31	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 193 197 +;Gap=I1 M4 
+scaffold_1	ALN	nucleotide_to_protein_match	26185	26186	22	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 198 198 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	26355	26373	33	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 199 204 +;Gap=M6 
+scaffold_1	ALN	nucleotide_to_protein_match	26461	26483	8	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 205 207 +;Gap=M3 D5 
+scaffold_1	ALN	nucleotide_to_protein_match	26542	26567	22	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 208 212 +;Gap=D4 M5 
+scaffold_1	ALN	nucleotide_to_protein_match	26640	26644	24	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 213 213 +;Gap=M1 
+scaffold_1	ALN	nucleotide_to_protein_match	28412	28418	28	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 214 216 +;Gap=M3 
+scaffold_1	ALN	nucleotide_to_protein_match	28949	28957	26	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 217 217 +;Gap=M1 D2 
+scaffold_1	ALN	nucleotide_to_protein_match	29102	29124	36	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 218 221 +;Gap=D3 M4 
+scaffold_1	ALN	nucleotide_to_protein_match	29796	29800	24	+	.	ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 222 222 +;Gap=M1 D1