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changeset 3:32c11a4b5dbf draft

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"planemo upload for repository https://github.com/ogotoh/spaln commit cb502aebea8ea9ba332768864b8b6daf933e4da8"
author iuc
date Wed, 02 Feb 2022 14:15:38 +0000
parents dd0cd2319ae5
children 2e92e1929cb1
files macros.xml spaln.xml test-data/output1.tabular test-data/output2.tabular
diffstat 4 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Nov 19 10:09:15 2021 +0000
+++ b/macros.xml	Wed Feb 02 14:15:38 2022 +0000
@@ -1,3 +1,3 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.4.6</token>
+    <token name="@TOOL_VERSION@">2.4.7</token>
 </macros>
\ No newline at end of file
--- a/spaln.xml	Fri Nov 19 10:09:15 2021 +0000
+++ b/spaln.xml	Wed Feb 02 14:15:38 2022 +0000
@@ -180,7 +180,7 @@
         close (in terms of taxonomic distance) to your species of interest. Use of this setting is recommended.
 
 
-        .. _Spaln: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/
+        .. _Spaln: https://github.com/ogotoh/spaln
     ]]></help>
     <citations>
         <citation type="doi">0.1093/nar/gkn105</citation>
--- a/test-data/output1.tabular	Fri Nov 19 10:09:15 2021 +0000
+++ b/test-data/output1.tabular	Wed Feb 02 14:15:38 2022 +0000
@@ -15,4 +15,4 @@
 NP_001121846.1	scaffold_1	  37.50	     24	      5	      0	    198	    205	  10045	  10068	    2.8	     56	    0.4	   0.77	   0.51  0 0  0 0 GT.AG
 NP_001121846.1	scaffold_1	  25.00	     24	      6	      0	    206	    213	  10229	  10252	    3.8	    160	   -0.7	   1.30	   1.25  0 0  0 0 GT.AG
 NP_001121846.1	scaffold_1	  20.00	     24	      6	      1	    214	    222	  10395	  10418	    4.6	    142	    0.0	   1.24	   3.54  0 0  0 0 GT.AG
-@ scaffold_1 + ( 17 10418 ) NP_001121846.1 [1:222] ( 1 222 ) S: 420.1 =: 36.5 C: 97.3 T#: 135 T-: 8 B#: 0 B-: 0 X: 0 Nexn: 16 HC:  0.0
+@ scaffold_1 + ( 17 10418 ) NP_001121846.1 [1:222] ( 1 222 ) S: 420.1 =: 36.5 C: 97.3 T#: 135 T-: 8 B#: 0 B-: 0 X: 0 Nexn: 16 HC:  6.8
--- a/test-data/output2.tabular	Fri Nov 19 10:09:15 2021 +0000
+++ b/test-data/output2.tabular	Wed Feb 02 14:15:38 2022 +0000
@@ -4,4 +4,4 @@
 NP_001121846.1	scaffold_1	  64.29	    127	     15	      0	     69	    110	   7124	   7250	   18.9	   6584	   -3.1	   1.77	   1.71  0 0  0 0 GT.AG
 NP_001121846.1	scaffold_1	  24.49	    147	     30	      7	    111	    152	  44187	  44333	    3.0	  36936	   -4.2	   1.03	   1.02  0 0  0 1 GT.AG
 NP_001121846.1	scaffold_1	  18.75	    221	     52	     10	    153	    222	  44595	  44815	    4.8	    261	   -1.6	   1.50	   3.36  0 0  0 1 GT.AG
-@ scaffold_1 + ( 17 44815 ) NP_001121846.1 [1:222] ( 1 222 ) S: 324.7 =: 37.8 C: 98.6 T#: 135 T-: 20 B#: 0 B-: 0 X: 0 Nexn: 5 HC:  0.0
+@ scaffold_1 + ( 17 44815 ) NP_001121846.1 [1:222] ( 1 222 ) S: 324.7 =: 37.8 C: 98.6 T#: 135 T-: 20 B#: 0 B-: 0 X: 0 Nexn: 5 HC:  6.8