comparison sra_macros.xml @ 16:aad3885b3216 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 2be63abd7e4db27fa32ecbbc10d48cacb0073115"

15:f5ea3ce9b9b0

<macros>
    <token name="@VERSION@">2.10</token>
    <token name="@ACCESSIONS_FROM_FILE@">
        grep '^[[:space:]]*[E|S|D]RR[0-9]\{1,\}[[:space:]]*$'
    </token>
    <token name="@SET_ACCESSIONS@"><![CDATA[
        #if $input.input_select=="file_list":
            for acc in `@ACCESSIONS_FROM_FILE@ '$input.file_list'` ;
            do (
        #elif $input.input_select=="accession_number":

        #end if
    ]]></token>

    <macro name="requirements">
        <requirements>
            <requirement type="package" version="2.10">sra-tools</requirement>
            <requirement type="package" version="1.9">samtools</requirement>
        </requirements>
    </macro>
    <macro name="sanitize_query">
        <sanitizer>
            <valid initial="string.printable">

16:aad3885b3216

<macros>
    <token name="@VERSION@">2.10.4</token>
    <token name="@ACCESSIONS_FROM_FILE@">
        grep '^[[:space:]]*[E|S|D]RR[0-9]\{1,\}[[:space:]]*$'
    </token>
    <token name="@CONFIGURE_TIMEOUT@"><![CDATA[
        vdb-config --restore-defaults && vdb-config -s /http/timeout/read=10000 || true &&
    ]]></token>
    <token name="@SET_ACCESSIONS@"><![CDATA[
        #if $input.input_select=="file_list":
            for acc in `@ACCESSIONS_FROM_FILE@ '$input.file_list'` ;
            do (
        #elif $input.input_select=="accession_number":

        #end if
    ]]></token>

    <macro name="requirements">
        <requirements>
            <requirement type="package" version="2.10.3">sra-tools</requirement>
            <yield/>
        </requirements>
    </macro>
    <macro name="sanitize_query">
        <sanitizer>
            <valid initial="string.printable">