Mercurial > repos > iuc > sra_tools

diff sra_macros.xml @ 16:aad3885b3216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 2be63abd7e4db27fa32ecbbc10d48cacb0073115"
author iuc
date Fri, 20 Mar 2020 12:47:18 -0400
parents f5ea3ce9b9b0
children c441583adae5
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line diff
--- a/sra_macros.xml	Tue Sep 10 11:35:35 2019 -0400
+++ b/sra_macros.xml	Fri Mar 20 12:47:18 2020 -0400
@@ -1,8 +1,11 @@
 <macros>
-    <token name="@VERSION@">2.10</token>
+    <token name="@VERSION@">2.10.4</token>
     <token name="@ACCESSIONS_FROM_FILE@">
         grep '^[[:space:]]*[E|S|D]RR[0-9]\{1,\}[[:space:]]*$'
     </token>
+    <token name="@CONFIGURE_TIMEOUT@"><![CDATA[
+        vdb-config --restore-defaults && vdb-config -s /http/timeout/read=10000 || true &&
+    ]]></token>
     <token name="@SET_ACCESSIONS@"><![CDATA[
         #if $input.input_select=="file_list":
             for acc in `@ACCESSIONS_FROM_FILE@ '$input.file_list'` ;
@@ -14,8 +17,8 @@
 
     <macro name="requirements">
         <requirements>
-            <requirement type="package" version="2.10">sra-tools</requirement>
-            <requirement type="package" version="1.9">samtools</requirement>
+            <requirement type="package" version="2.10.3">sra-tools</requirement>
+            <yield/>
         </requirements>
     </macro>
     <macro name="sanitize_query">