Mercurial > repos > iuc > stacks2_cstacks
diff test-data/procrad/process_radtags2.out @ 1:f4aab9196d1e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author | iuc |
---|---|
date | Mon, 30 Sep 2019 14:18:15 -0400 |
parents | |
children | 0cd2df8af811 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/procrad/process_radtags2.out Mon Sep 30 14:18:15 2019 -0400 @@ -0,0 +1,88 @@ +process_radtags v2.4, executed 2019-09-30 14:57:00 (zlib-1.2.11) +process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmpe_shit/files/d/e/d/dataset_ded45538-15ef-471f-9585-07ee09b6e6d4.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI +File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total +R1.fastq.gz 2222 0 0 4778 7000 +R2.fastq.gz 0 0 7000 0 7000 + +Total Sequences 14000 +Barcode Not Found 7000 +Low Quality 0 +RAD Cutsite Not Found 4778 +Retained Reads 2222 + +Barcode Filename Total NoRadTag LowQuality Retained +ATGGGG PopA_01 160 94 0 66 +GGGTAA PopA_02 146 86 0 60 +AGGAAA PopA_03 224 132 0 92 +TTTAAG PopA_04 168 146 0 22 +GGTGTG PopA_05 220 154 0 66 +TGATGT PopA_06 214 147 0 67 +GGTTGT PopA_07 182 137 0 45 +ATAAGT PopA_08 232 164 0 68 +AAGATA PopA_09 182 134 0 48 +TGTGAG PopA_10 168 128 0 40 +ATAGTT PopA_11 200 132 0 68 +GGAAGG PopA_12 178 136 0 42 +TTTGTG PopA_13 190 152 0 38 +TTAAAT PopA_14 166 96 0 70 +AATAAG PopA_15 152 74 0 78 +AAGAGG PopA_16 174 112 0 62 +TAGTGT PopA_17 242 146 0 96 +TGGAAG PopA_18 148 98 0 50 +GGGTTG PopA_19 110 64 0 46 +CATCAT PopA_20 178 144 0 34 +GGAGAG PopB_20 210 142 0 68 +GTTTTA PopB_01 136 90 0 46 +TGATAA PopB_02 166 108 0 58 +GTTGAT PopB_03 148 74 0 74 +AGATTA PopB_04 180 156 0 24 +GTATAG PopB_05 136 106 0 30 +TTGGGA PopB_06 166 112 0 54 +ATATAT PopB_07 242 156 0 86 +GATGAG PopB_08 208 152 0 56 +GGGAAT PopB_09 198 126 0 72 +AGTAAT PopB_10 164 120 0 44 +GGGATA PopB_11 146 90 0 56 +GAGAAG PopB_12 162 110 0 52 +AGTAGA PopB_13 204 146 0 58 +AAGGAT PopB_14 180 128 0 52 +AGGGTA PopB_15 134 72 0 62 +TGTTTT PopB_16 138 98 0 40 +ATGATG PopB_17 142 100 0 42 +GAGTTA PopB_18 160 112 0 48 +ATGTAG PopB_19 146 104 0 42 + +Sequences not recorded +Barcode Total +CCGGTG 772 +CCGCGC 750 +CCGACA 743 +CCGGTC 723 +CCGCCT 695 +CCGTGG 675 +CCGGTT 667 +CCGATC 579 +CCGTGT 417 +CCGTAT 252 +CCGCGT 198 +CCGCGG 150 +CCGCAT 117 +CCGTTC 94 +CCGTAC 38 +CCGGGA 32 +CCGGAG 26 +CCGAAC 24 +CCGAGT 18 +CCGTGA 10 +CCGGGT 7 +CCGCTT 2 +CCGACG 2 +CCGATT 1 +CCGCCC 1 +CCGGCA 1 +CCGGCT 1 +CCGGGG 1 +CCGCCG 1 +CCGTGC 1 +CCGTAG 1 +CCGACT 1