Mercurial > repos > iuc > stacks2_cstacks

annotate test-data/procrad/process_radtags2.out @ 1:f4aab9196d1e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:18:15 -0400
parents
children 0cd2df8af811
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1
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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diff changeset
1 process_radtags v2.4, executed 2019-09-30 14:57:00 (zlib-1.2.11)
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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2 process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmpe_shit/files/d/e/d/dataset_ded45538-15ef-471f-9585-07ee09b6e6d4.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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diff changeset
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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4 R1.fastq.gz 2222 0 0 4778 7000
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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5 R2.fastq.gz 0 0 7000 0 7000
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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6
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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7 Total Sequences 14000
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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8 Barcode Not Found 7000
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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9 Low Quality 0
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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10 RAD Cutsite Not Found 4778
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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11 Retained Reads 2222
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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12
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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13 Barcode Filename Total NoRadTag LowQuality Retained
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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14 ATGGGG PopA_01 160 94 0 66
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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15 GGGTAA PopA_02 146 86 0 60
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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16 AGGAAA PopA_03 224 132 0 92
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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17 TTTAAG PopA_04 168 146 0 22
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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18 GGTGTG PopA_05 220 154 0 66
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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19 TGATGT PopA_06 214 147 0 67
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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20 GGTTGT PopA_07 182 137 0 45
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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21 ATAAGT PopA_08 232 164 0 68
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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22 AAGATA PopA_09 182 134 0 48
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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23 TGTGAG PopA_10 168 128 0 40
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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24 ATAGTT PopA_11 200 132 0 68
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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25 GGAAGG PopA_12 178 136 0 42
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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26 TTTGTG PopA_13 190 152 0 38
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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27 TTAAAT PopA_14 166 96 0 70
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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28 AATAAG PopA_15 152 74 0 78
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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29 AAGAGG PopA_16 174 112 0 62
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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30 TAGTGT PopA_17 242 146 0 96
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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31 TGGAAG PopA_18 148 98 0 50
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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32 GGGTTG PopA_19 110 64 0 46
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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33 CATCAT PopA_20 178 144 0 34
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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34 GGAGAG PopB_20 210 142 0 68
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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35 GTTTTA PopB_01 136 90 0 46
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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36 TGATAA PopB_02 166 108 0 58
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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37 GTTGAT PopB_03 148 74 0 74
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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38 AGATTA PopB_04 180 156 0 24
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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39 GTATAG PopB_05 136 106 0 30
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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40 TTGGGA PopB_06 166 112 0 54
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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41 ATATAT PopB_07 242 156 0 86
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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42 GATGAG PopB_08 208 152 0 56
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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43 GGGAAT PopB_09 198 126 0 72
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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44 AGTAAT PopB_10 164 120 0 44
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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45 GGGATA PopB_11 146 90 0 56
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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46 GAGAAG PopB_12 162 110 0 52
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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47 AGTAGA PopB_13 204 146 0 58
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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48 AAGGAT PopB_14 180 128 0 52
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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49 AGGGTA PopB_15 134 72 0 62
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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50 TGTTTT PopB_16 138 98 0 40
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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51 ATGATG PopB_17 142 100 0 42
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52 GAGTTA PopB_18 160 112 0 48
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
iuc
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53 ATGTAG PopB_19 146 104 0 42
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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54
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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55 Sequences not recorded
f4aab9196d1e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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56 Barcode Total
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58 CCGCGC 750
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59 CCGACA 743
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64 CCGATC 579
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65 CCGTGT 417
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66 CCGTAT 252
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67 CCGCGT 198
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iuc
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69 CCGCAT 117
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iuc
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75 CCGAGT 18
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76 CCGTGA 10
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77 CCGGGT 7
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78 CCGCTT 2
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79 CCGACG 2
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80 CCGATT 1
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iuc
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81 CCGCCC 1
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iuc
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84 CCGGGG 1
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iuc
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85 CCGCCG 1
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86 CCGTGC 1
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iuc
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87 CCGTAG 1
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iuc
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88 CCGACT 1