Mercurial > repos > iuc > stacks2_shortreads

annotate test-data/procrad/process_radtags_paired_no_barcode.out @ 5:4e280b27a831 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:25:46 +0000
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5
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
1 process_radtags -p stacks_inputs/ --paired -i gzfastq -y gzfasta -o stacks_outputs -e ecoRI
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
2 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
3 reads_R1_0.fastq.gz 7000 0 0 7000 14000
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
4
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
5 Total Sequences 14000
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
6 Barcode Not Found 0
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
7 Low Quality 0
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
8 RAD Cutsite Not Found 7000
4e280b27a831 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
9 Retained Reads 7000