Mercurial > repos > iuc > stacks2_shortreads
view test-data/stacks_outputs/tsv2bam.log @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:02:39 -0400 |
| parents | |
| children |
line wrap: on
line source
tsv2bam v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ Configuration for this run: Stacks directory: 'stacks_outputs/' Population map: 'denovo_map/popmap_cstacks.tsv' Num. samples: 2 Paired-end reads directory: 'demultiplexed/' Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. Loading the catalog... Processing sample 'PopA_01'... Processing sample 'PopA_02'... Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. tsv2bam is done.