Mercurial > repos > iuc > stacks_assembleperead
annotate test-data/procrad/process_radtags.out @ 0:e3ca198820a8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
author | iuc |
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date | Tue, 14 Jun 2016 14:05:40 -0400 |
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0
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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1 process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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2 process_radtags version 1.37 executed 2016-03-31 10:44:24 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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3 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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4 File Retained Reads Low Quality Ambiguous Barcodes Ambiguous RAD-Tag Total |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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5 dataset_1.dat 1767 0 0 233 2000 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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6 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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7 Total Sequences 2000 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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8 Ambiguous Barcodes 0 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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9 Low Quality 0 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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10 Ambiguous RAD-Tag 233 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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11 Retained Reads 1767 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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12 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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13 Barcode Filename Total No RadTag Low Quality Retained |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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14 ATGGGG PopA_01 56 0 0 56 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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15 GGGTAA PopA_02 84 14 0 70 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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16 AGGAAA PopA_03 76 22 0 54 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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17 TTTAAG PopA_04 52 24 0 28 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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18 GGTGTG PopA_05 64 10 0 54 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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19 TGATGT PopA_06 100 32 0 68 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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diff
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20 GGTTGT PopA_07 100 31 0 69 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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21 ATAAGT PopA_08 84 12 0 72 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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22 AAGATA PopA_09 68 26 0 42 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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23 TGTGAG PopA_10 0 0 0 0 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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24 ATAGTT PopA_11 52 0 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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25 GGAAGG PopA_12 36 0 0 36 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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26 TTTGTG PopA_13 44 0 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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27 TTAAAT PopA_14 52 0 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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28 AATAAG PopA_15 52 0 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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29 AAGAGG PopA_16 28 0 0 28 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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30 TAGTGT PopA_17 56 0 0 56 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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31 TGGAAG PopA_18 72 0 0 72 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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32 GGGTTG PopA_19 36 0 0 36 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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33 CATCAT PopA_20 76 24 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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34 GGAGAG PopB_20 44 0 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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35 GTTTTA PopB_01 20 0 0 20 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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36 TGATAA PopB_02 64 0 0 64 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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37 GTTGAT PopB_03 40 0 0 40 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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38 AGATTA PopB_04 20 0 0 20 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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39 GTATAG PopB_05 12 0 0 12 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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40 TTGGGA PopB_06 52 0 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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41 ATATAT PopB_07 40 0 0 40 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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42 GATGAG PopB_08 64 0 0 64 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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43 GGGAAT PopB_09 44 0 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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44 AGTAAT PopB_10 52 0 0 52 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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45 GGGATA PopB_11 48 0 0 48 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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46 GAGAAG PopB_12 28 0 0 28 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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47 AGTAGA PopB_13 44 0 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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48 AAGGAT PopB_14 64 22 0 42 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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49 AGGGTA PopB_15 64 0 0 64 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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50 TGTTTT PopB_16 8 0 0 8 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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51 ATGATG PopB_17 0 0 0 0 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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52 GAGTTA PopB_18 44 0 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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53 ATGTAG PopB_19 60 16 0 44 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
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54 |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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55 Sequences not recorded |
e3ca198820a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
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56 Barcode Total |