Mercurial > repos > iuc > suite_samtools

changeset 9:299570cef74b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools commit 62d845456b6048e7f22ecdc2b323217e00253908
author iuc
date Tue, 17 Feb 2026 11:30:39 +0000
parents 859081ddb86c
children
files repository_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Nov 12 12:55:50 2025 +0000
+++ b/repository_dependencies.xml	Tue Feb 17 11:30:39 2026 +0000
@@ -1,21 +1,22 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
-    <repository owner="devteam" name="samtools_bedcov" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="09652022e285"/>
-    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="22c2ab33cec9"/>
-    <repository owner="iuc" name="samtools_depth" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="772919943459"/>
-    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9038311ed624"/>
-    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c05afbeaf42d"/>
-    <repository owner="devteam" name="samtools_flagstat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3ed3e1146308"/>
-    <repository owner="devteam" name="samtools_idxstats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5c25c98e2a88"/>
-    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="229ba92a3b55"/>
-    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a7617eb92baf"/>
-    <repository owner="devteam" name="samtools_mpileup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7df230bec125"/>
-    <repository owner="devteam" name="samtools_phase" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1e5880498f52"/>
-    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2899e5b8c52a"/>
-    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f2f2650aeade"/>
-    <repository owner="devteam" name="samtools_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="818030fa6bbf"/>
-    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ed8ed887035"/>
-    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48bbbcb692ce"/>
-    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ddbd49b892e5"/>
-    <repository owner="iuc" name="samtools_conssensus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8feff7665181"/>
+    <repository owner="devteam" name="samtools_bedcov" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cc01c0658f6c"/>
+    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26a85f18dc69"/>
+    <repository owner="iuc" name="samtools_depth" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb6d5ffc365f"/>
+    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="491037bfc0d2"/>
+    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="68a116f469db"/>
+    <repository owner="devteam" name="samtools_flagstat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a0d8e49a018c"/>
+    <repository owner="devteam" name="samtools_idxstats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="13aad5cb9be4"/>
+    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="56fb540810ce"/>
+    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c8bc9d08b0e3"/>
+    <repository owner="devteam" name="samtools_mpileup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0668270db5ba"/>
+    <repository owner="devteam" name="samtools_phase" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2f901e9402dd"/>
+    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="df41198e970c"/>
+    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="69dca890852c"/>
+    <repository owner="devteam" name="samtools_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3d9c6d1d0b9c"/>
+    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="57934e90e27c"/>
+    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ec526530725"/>
+    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5160be5d088f"/>
+    <repository owner="iuc" name="samtools_consensus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="65edd5a6002e"/>
+    <repository owner="iuc" name="samtools_collate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e7fa06931998"/>
 </repositories>
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