tooldistillator: test-data/summarize/fastqc

annotate test-data/summarize/fastqc_output.json @ 2:a7387ce2a8ca draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80

author	iuc
date	Wed, 03 Jul 2024 12:06:58 +0000
parents
children

rev	line source
2 a7387ce2a8ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80 iuc parents: diff changeset	1 [{"analysis_software_version": "0.12.1", "reference_database_version": null, "analysis_software_name": "fastqc", "results": [{"name": "fastqc_report", "file_path": "tests/data/dummy/fastqc/fastqc_report.txt", "hid": "12345", "galaxy_id": null, "content": [{"basic_statistics": [{"Measure": "Filename", "Value": "SRR8335315_150M_fastq"}, {"Measure": "File type", "Value": "Conventional base calls"}, {"Measure": "Encoding", "Value": "Sanger / Illumina 1.9"}, {"Measure": "Total Sequences", "Value": "150000"}, {"Measure": "Total Bases", "Value": "1 Gbp"}, {"Measure": "Sequences flagged as poor quality", "Value": "0"}, {"Measure": "Sequence length", "Value": "5000-208721"}, {"Measure": "%GC", "Value": "49"}], "per_base_sequence_quality": [{"Base": "1", "Mean": 2.8365066666666667, "Median": 2.0, "Lower Quartile": 1.0, "Upper Quartile": 4.0, "10th Percentile": 1.0, "90th Percentile": 6.0}, {"Base": "2", "Mean": 5.008253333333333, "Median": 3.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "3", "Mean": 4.9963733333333336, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "4", "Mean": 5.492173333333334, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "5", "Mean": 5.953973333333333, "Median": 5.0, "Lower Quartile": 3.0, "Upper Quartile": 8.0, "10th Percentile": 1.0, "90th Percentile": 11.0}, {"Base": "6", "Mean": 5.105973333333333, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "7", "Mean": 6.98078, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 9.0, "10th Percentile": 2.0, "90th Percentile": 13.0}, {"Base": "8", "Mean": 7.78512, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 11.0, "10th Percentile": 2.0, "90th Percentile": 15.0}, {"Base": "9", "Mean": 9.664386666666667, "Median": 8.0, "Lower Quartile": 5.0, "Upper Quartile": 13.0, "10th Percentile": 3.0, "90th Percentile": 18.0}, {"Base": "10-4999", "Mean": 12.829364350033384, "Median": 11.984569138276552, "Lower Quartile": 6.997795591182364, "Upper Quartile": 17.925851703406813, "10th Percentile": 3.997995991983968, "90th Percentile": 22.98977955911824}, {"Base": "5000-9999", "Mean": 12.78321836605465, "Median": 11.9984, "Lower Quartile": 7.0, "Upper Quartile": 17.8802, "10th Percentile": 4.0, "90th Percentile": 23.0}, {"Base": "10000-14999", "Mean": 12.457365374925567, "Median": 11.4172, "Lower Quartile": 6.94, "Upper Quartile": 17.1414, "10th Percentile": 3.9632, "90th Percentile": 22.7734}, {"Base": "15000-19999", "Mean": 12.328473958980618, "Median": 11.2712, "Lower Quartile": 6.755, "Upper Quartile": 17.0012, "10th Percentile": 3.809, "90th Percentile": 22.425}, {"Base": "20000-24999", "Mean": 11.82052704708205, "Median": 10.740273037542662, "Lower Quartile": 6.310921501706485, "Upper Quartile": 16.367576791808872, "10th Percentile": 3.4976109215017064, "90th Percentile": 21.71706484641638}, {"Base": "25000-29999", "Mean": 10.868158810996196, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "30000-34999", "Mean": 8.860082551892548, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "35000-39999", "Mean": 8.747852380952377, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "40000-44999", "Mean": 9.24235, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "45000-49999", "Mean": 9.2681, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "50000-54999", "Mean": 9.858916666666673, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "55000-59999", "Mean": 8.900866666666667, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "60000-64999", "Mean": 8.3888, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "65000-69999", "Mean": 8.4588, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "70000-74999", "Mean": 8.2615, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "75000-79999", "Mean": 8.1645, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "80000-84999", "Mean": 8.4919, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "85000-89999", "Mean": 8.2781, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "90000-94999", "Mean": 8.7185, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "95000-99999", "Mean": 8.6579, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "100000-104999", "Mean": 8.2408, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "105000-109999", "Mean": 8.4248, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "110000-114999", "Mean": 8.695, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "115000-119999", "Mean": 9.1269, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "120000-124999", "Mean": 9.1556, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "125000-129999", "Mean": 8.9884, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "130000-134999", "Mean": 9.1352, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "135000-139999", "Mean": 8.5902, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "140000-144999", "Mean": 8.9054, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "145000-149999", "Mean": 9.1072, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "150000-154999", "Mean": 8.9374, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "155000-159999", "Mean": 8.9778, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "160000-164999", "Mean": 9.1418, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "165000-169999", "Mean": 9.1, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "170000-174999", "Mean": 8.825, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "175000-179999", "Mean": 9.0798, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "180000-184999", "Mean": 9.086, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "185000-189999", "Mean": 9.243, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "190000-194999", "Mean": 9.3418, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "195000-199999", "Mean": 8.6886, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "200000-204999", "Mean": 8.9724, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "205000-208721", "Mean": 8.934443847393874, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}], "per_sequence_quality_scores": [{"Quality": 6, "Count": 137.0}, {"Quality": 7, "Count": 83.0}, {"Quality": 8, "Count": 315.0}, {"Quality": 9, "Count": 713.0}, {"Quality": 10, "Count": 17339.0}, {"Quality": 11, "Count": 35124.0}, {"Quality": 12, "Count": 52936.0}, {"Quality": 13, "Count": 22175.0}, {"Quality": 14, "Count": 2989.0}, {"Quality": 15, "Count": 2807.0}, {"Quality": 16, "Count": 3385.0}, {"Quality": 17, "Count": 4515.0}, {"Quality": 18, "Count": 5029.0}, {"Quality": 19, "Count": 2257.0}, {"Quality": 20, "Count": 188.0}, {"Quality": 21, "Count": 8.0}], "per_base_sequence_content": [{"Base": "1", "G": 4.296666666666667, "A": 33.91133333333333, "T": 14.367333333333333, "C": 47.42466666666667}, {"Base": "2", "G": 14.108666666666666, "A": 8.154, "T": 37.97533333333333, "C": 39.762}, {"Base": "3", "G": 66.384, "A": 18.305333333333333, "T": 9.292, "C": 6.018666666666666}, {"Base": "4", "G": 26.55666666666667, "A": 14.106, "T": 55.059333333333335, "C": 4.278}, {"Base": "5", "G": 12.635333333333335, "A": 13.586666666666666, "T": 66.95466666666667, "C": 6.823333333333332}, {"Base": "6", "G": 39.42533333333333, "A": 28.452, "T": 17.297333333333334, "C": 14.825333333333331}, {"Base": "7", "G": 17.63533333333333, "A": 7.803333333333333, "T": 43.79866666666667, "C": 30.762666666666664}, {"Base": "8", "G": 22.85, "A": 17.016666666666666, "T": 37.35666666666667, "C": 22.776666666666667}, {"Base": "9", "G": 15.648, "A": 5.405333333333333, "T": 35.742000000000004, "C": 43.20466666666667}, {"Base": "10-4999", "G": 25.032629926519707, "A": 25.026529058116232, "T": 25.05940788243153, "C": 24.88143313293253}, {"Base": "5000-9999", "G": 25.026564605357425, "A": 25.117699789958078, "T": 24.96846532067271, "C": 24.88727028401179}, {"Base": "10000-14999", "G": 24.998636583465142, "A": 25.082778861044677, "T": 25.06727486730548, "C": 24.85130968818469}, {"Base": "15000-19999", "G": 24.957521341264087, "A": 25.02588790414481, "T": 25.17200605421943, "C": 24.84458470037168}, {"Base": "20000-24999", "G": 24.54487262351789, "A": 25.01475688901418, "T": 26.216800893356364, "C": 24.223569594111574}, {"Base": "25000-29999", "G": 22.875343560026536, "A": 25.65902598193856, "T": 28.820455191648957, "C": 22.64517526638595}, {"Base": "30000-34999", "G": 22.91190288113749, "A": 24.342077911279254, "T": 32.31613520143017, "C": 20.42988400615308}, {"Base": "35000-39999", "G": 23.53886783786887, "A": 19.003329888620968, "T": 36.04700118651204, "C": 21.410801086998124}, {"Base": "40000-44999", "G": 24.587721041128557, "A": 20.27121001390821, "T": 35.063580369560896, "C": 20.077488575402345}, {"Base": "45000-49999", "G": 24.47, "A": 20.765, "T": 35.52, "C": 19.245}, {"Base": "50000-54999", "G": 22.197183098591548, "A": 21.295774647887324, "T": 38.37871674491392, "C": 18.1283255086072}, {"Base": "55000-59999", "G": 20.373440362970072, "A": 20.40834133147195, "T": 43.97522031236367, "C": 15.24299799319431}, {"Base": "60000-64999", "G": 21.16, "A": 19.22, "T": 43.6, "C": 16.02}, {"Base": "65000-69999", "G": 20.99, "A": 18.94, "T": 45.74, "C": 14.330000000000002}, {"Base": "70000-74999", "G": 20.91, "A": 20.02, "T": 43.55, "C": 15.52}, {"Base": "75000-79999", "G": 19.99, "A": 19.43, "T": 45.31, "C": 15.27}, {"Base": "80000-84999", "G": 20.25, "A": 19.66, "T": 45.69, "C": 14.4}, {"Base": "85000-89999", "G": 20.05, "A": 19.69, "T": 45.05, "C": 15.21}, {"Base": "90000-94999", "G": 19.93, "A": 18.86, "T": 47.14, "C": 14.07}, {"Base": "95000-99999", "G": 18.53, "A": 19.46, "T": 48.2, "C": 13.81}, {"Base": "100000-104999", "G": 21.18, "A": 19.42, "T": 44.77, "C": 14.63}, {"Base": "105000-109999", "G": 20.75, "A": 18.87, "T": 45.85, "C": 14.53}, {"Base": "110000-114999", "G": 18.83, "A": 18.61, "T": 48.36, "C": 14.2}, {"Base": "115000-119999", "G": 18.45438512105179, "A": 16.017316017316016, "T": 52.41301907968574, "C": 13.115279781946448}, {"Base": "120000-124999", "G": 17.7, "A": 15.22, "T": 55.46, "C": 11.62}, {"Base": "125000-129999", "G": 18.26, "A": 15.9, "T": 53.620000000000005, "C": 12.22}, {"Base": "130000-134999", "G": 19.02, "A": 14.96, "T": 54.04, "C": 11.98}, {"Base": "135000-139999", "G": 19.22, "A": 14.18, "T": 51.48, "C": 15.12}, {"Base": "140000-144999", "G": 17.14, "A": 15.56, "T": 52.94, "C": 14.36}, {"Base": "145000-149999", "G": 18.92, "A": 14.36, "T": 52.6, "C": 14.12}, {"Base": "150000-154999", "G": 19.4, "A": 14.08, "T": 54.0, "C": 12.52}, {"Base": "155000-159999", "G": 19.46, "A": 14.36, "T": 54.92, "C": 11.26}, {"Base": "160000-164999", "G": 17.66, "A": 15.3, "T": 53.3, "C": 13.74}, {"Base": "165000-169999", "G": 17.88, "A": 15.58, "T": 53.44, "C": 13.1}, {"Base": "170000-174999", "G": 20.08, "A": 13.38, "T": 52.02, "C": 14.52}, {"Base": "175000-179999", "G": 19.14, "A": 15.46, "T": 53.56, "C": 11.84}, {"Base": "180000-184999", "G": 19.14, "A": 14.4, "T": 54.28, "C": 12.18}, {"Base": "185000-189999", "G": 18.98, "A": 14.64, "T": 55.88, "C": 10.5}, {"Base": "190000-194999", "G": 18.7, "A": 15.76, "T": 54.76, "C": 10.78}, {"Base": "195000-199999", "G": 18.88, "A": 14.82, "T": 52.24, "C": 14.06}, {"Base": "200000-204999", "G": 19.6, "A": 14.14, "T": 53.080000000000005, "C": 13.18}, {"Base": "205000-208721", "G": 18.860827512090275, "A": 14.696399785061796, "T": 53.65394948952176, "C": 12.78882321332617}], "per_sequence_gc_content": [{"GC Content": 0, "Count": 0.0}, {"GC Content": 1, "Count": 0.0}, {"GC Content": 2, "Count": 0.0}, {"GC Content": 3, "Count": 0.0}, {"GC Content": 4, "Count": 0.0}, {"GC Content": 5, "Count": 0.0}, {"GC Content": 6, "Count": 0.0}, {"GC Content": 7, "Count": 0.0}, {"GC Content": 8, "Count": 0.0}, {"GC Content": 9, "Count": 0.0030211480362537}, {"GC Content": 10, "Count": 0.0}, {"GC Content": 11, "Count": 0.0}, {"GC Content": 12, "Count": 0.0}, {"GC Content": 13, "Count": 0.0}, {"GC Content": 14, "Count": 0.0}, {"GC Content": 15, "Count": 0.0}, {"GC Content": 16, "Count": 0.0}, {"GC Content": 17, "Count": 0.0}, {"GC Content": 18, "Count": 0.0}, {"GC Content": 19, "Count": 0.0}, {"GC Content": 20, "Count": 0.0}, {"GC Content": 21, "Count": 0.0109890109890109}, {"GC Content": 22, "Count": 0.0}, {"GC Content": 23, "Count": 0.0}, {"GC Content": 24, "Count": 0.0}, {"GC Content": 25, "Count": 0.0}, {"GC Content": 26, "Count": 0.0}, {"GC Content": 27, "Count": 0.0319535221496005}, {"GC Content": 28, "Count": 0.0140845070422535}, {"GC Content": 29, "Count": 0.0}, {"GC Content": 30, "Count": 0.1340405014464802}, {"GC Content": 31, "Count": 0.6515987240993016}, {"GC Content": 32, "Count": 4.365585435255064}, {"GC Content": 33, "Count": 8.07823071481413}, {"GC Content": 34, "Count": 8.102099195858269}, {"GC Content": 35, "Count": 7.376039428478657}, {"GC Content": 36, "Count": 7.751923323708468}, {"GC Content": 37, "Count": 10.77885794625118}, {"GC Content": 38, "Count": 13.90096796160248}, {"GC Content": 39, "Count": 16.88144315732909}, {"GC Content": 40, "Count": 19.242435425714486}, {"GC Content": 41, "Count": 20.759412312263024}, {"GC Content": 42, "Count": 23.75459958757026}, {"GC Content": 43, "Count": 30.76369586650474}, {"GC Content": 44, "Count": 38.71251785866784}, {"GC Content": 45, "Count": 53.01968771245176}, {"GC Content": 46, "Count": 78.24846612843099}, {"GC Content": 47, "Count": 107.9843877253144}, {"GC Content": 48, "Count": 151.45301841673114}, {"GC Content": 49, "Count": 225.22760967406697}, {"GC Content": 50, "Count": 302.3114753659073}, {"GC Content": 51, "Count": 349.9400019314715}, {"GC Content": 52, "Count": 328.4055662555808}, {"GC Content": 53, "Count": 258.19951647078744}, {"GC Content": 54, "Count": 156.96207917099116}, {"GC Content": 55, "Count": 79.11733522003487}, {"GC Content": 56, "Count": 43.08776821569676}, {"GC Content": 57, "Count": 20.466679103342795}, {"GC Content": 58, "Count": 6.582160143149255}, {"GC Content": 59, "Count": 4.06042097946794}, {"GC Content": 60, "Count": 2.3842483826977854}, {"GC Content": 61, "Count": 0.2201275800091451}, {"GC Content": 62, "Count": 0.0}, {"GC Content": 63, "Count": 0.0}, {"GC Content": 64, "Count": 0.0}, {"GC Content": 65, "Count": 0.0}, {"GC Content": 66, "Count": 0.0}, {"GC Content": 67, "Count": 0.0}, {"GC Content": 68, "Count": 0.0}, {"GC Content": 69, "Count": 0.0}, {"GC Content": 70, "Count": 0.0}, {"GC Content": 71, "Count": 0.0}, {"GC Content": 72, "Count": 0.0}, {"GC Content": 73, "Count": 0.0}, {"GC Content": 74, "Count": 0.0}, {"GC Content": 75, "Count": 0.0}, {"GC Content": 76, "Count": 0.0}, {"GC Content": 77, "Count": 0.0}, {"GC Content": 78, "Count": 0.0}, {"GC Content": 79, "Count": 0.0}, {"GC Content": 80, "Count": 0.0}, {"GC Content": 81, "Count": 0.0}, {"GC Content": 82, "Count": 0.0}, {"GC Content": 83, "Count": 0.0}, {"GC Content": 84, "Count": 0.0}, {"GC Content": 85, "Count": 0.0}, {"GC Content": 86, "Count": 0.0}, {"GC Content": 87, "Count": 0.0}, {"GC Content": 88, "Count": 0.0}, {"GC Content": 89, "Count": 0.0}, {"GC Content": 90, "Count": 0.0}, {"GC Content": 91, "Count": 0.0}, {"GC Content": 92, "Count": 0.0}, {"GC Content": 93, "Count": 0.0}, {"GC Content": 94, "Count": 0.0}, {"GC Content": 95, "Count": 0.0}, {"GC Content": 96, "Count": 0.0}, {"GC Content": 97, "Count": 0.0}, {"GC Content": 98, "Count": 0.0}, {"GC Content": 99, "Count": 0.0}, {"GC Content": 100, "Count": 0.0}], "per_base_n_content": [{"Base": "1", "N-Count": 0.0}, {"Base": "2", "N-Count": 0.0}, {"Base": "3", "N-Count": 0.0}, {"Base": "4", "N-Count": 0.0}, {"Base": "5", "N-Count": 0.0}, {"Base": "6", "N-Count": 0.0}, {"Base": "7", "N-Count": 0.0}, {"Base": "8", "N-Count": 0.0}, {"Base": "9", "N-Count": 0.0}, {"Base": "10-4999", "N-Count": 0.0}, {"Base": "5000-9999", "N-Count": 0.0}, {"Base": "10000-14999", "N-Count": 0.0}, {"Base": "15000-19999", "N-Count": 0.0}, {"Base": "20000-24999", "N-Count": 0.0}, {"Base": "25000-29999", "N-Count": 0.0}, {"Base": "30000-34999", "N-Count": 0.0}, {"Base": "35000-39999", "N-Count": 0.0}, {"Base": "40000-44999", "N-Count": 0.0}, {"Base": "45000-49999", "N-Count": 0.0}, {"Base": "50000-54999", "N-Count": 0.0}, {"Base": "55000-59999", "N-Count": 0.0}, {"Base": "60000-64999", "N-Count": 0.0}, {"Base": "65000-69999", "N-Count": 0.0}, {"Base": "70000-74999", "N-Count": 0.0}, {"Base": "75000-79999", "N-Count": 0.0}, {"Base": "80000-84999", "N-Count": 0.0}, {"Base": "85000-89999", "N-Count": 0.0}, {"Base": "90000-94999", "N-Count": 0.0}, {"Base": "95000-99999", "N-Count": 0.0}, {"Base": "100000-104999", "N-Count": 0.0}, {"Base": "105000-109999", "N-Count": 0.0}, {"Base": "110000-114999", "N-Count": 0.0}, {"Base": "115000-119999", "N-Count": 0.0}, {"Base": "120000-124999", "N-Count": 0.0}, {"Base": "125000-129999", "N-Count": 0.0}, {"Base": "130000-134999", "N-Count": 0.0}, {"Base": "135000-139999", "N-Count": 0.0}, {"Base": "140000-144999", "N-Count": 0.0}, {"Base": "145000-149999", "N-Count": 0.0}, {"Base": "150000-154999", "N-Count": 0.0}, {"Base": "155000-159999", "N-Count": 0.0}, {"Base": "160000-164999", "N-Count": 0.0}, {"Base": "165000-169999", "N-Count": 0.0}, {"Base": "170000-174999", "N-Count": 0.0}, {"Base": "175000-179999", "N-Count": 0.0}, {"Base": "180000-184999", "N-Count": 0.0}, {"Base": "185000-189999", "N-Count": 0.0}, {"Base": "190000-194999", "N-Count": 0.0}, {"Base": "195000-199999", "N-Count": 0.0}, {"Base": "200000-204999", "N-Count": 0.0}, {"Base": "205000-208721", "N-Count": 0.0}], "sequence_length_distribution": [{"Length": "5000-9999", "Count": 137977.0}, {"Length": "10000-14999", "Count": 10879.0}, {"Length": "15000-19999", "Count": 904.0}, {"Length": "20000-24999", "Count": 187.0}, {"Length": "25000-29999", "Count": 39.0}, {"Length": "30000-34999", "Count": 7.0}, {"Length": "35000-39999", "Count": 2.0}, {"Length": "40000-44999", "Count": 1.0}, {"Length": "45000-49999", "Count": 0.0}, {"Length": "50000-54999", "Count": 1.0}, {"Length": "55000-59999", "Count": 1.0}, {"Length": "60000-64999", "Count": 0.0}, {"Length": "65000-69999", "Count": 0.0}, {"Length": "70000-74999", "Count": 0.0}, {"Length": "75000-79999", "Count": 0.0}, {"Length": "80000-84999", "Count": 0.0}, {"Length": "85000-89999", "Count": 0.0}, {"Length": "90000-94999", "Count": 0.0}, {"Length": "95000-99999", "Count": 0.0}, {"Length": "100000-104999", "Count": 0.0}, {"Length": "105000-109999", "Count": 0.0}, {"Length": "110000-114999", "Count": 0.0}, {"Length": "115000-119999", "Count": 1.0}, {"Length": "120000-124999", "Count": 0.0}, {"Length": "125000-129999", "Count": 0.0}, {"Length": "130000-134999", "Count": 0.0}, {"Length": "135000-139999", "Count": 0.0}, {"Length": "140000-144999", "Count": 0.0}, {"Length": "145000-149999", "Count": 0.0}, {"Length": "150000-154999", "Count": 0.0}, {"Length": "155000-159999", "Count": 0.0}, {"Length": "160000-164999", "Count": 0.0}, {"Length": "165000-169999", "Count": 0.0}, {"Length": "170000-174999", "Count": 0.0}, {"Length": "175000-179999", "Count": 0.0}, {"Length": "180000-184999", "Count": 0.0}, {"Length": "185000-189999", "Count": 0.0}, {"Length": "190000-194999", "Count": 0.0}, {"Length": "195000-199999", "Count": 0.0}, {"Length": "200000-204999", "Count": 0.0}, {"Length": "205000-208722", "Count": 1.0}], "sequence_duplication_levels": [{"Total Deduplicated Percentage": "Duplication Level", "99.98987609018297": "Percentage of total"}, {"Total Deduplicated Percentage": "1", "99.98987609018297": "99.98775136045838"}, {"Total Deduplicated Percentage": "2", "99.98987609018297": "0.002249664426082111"}, {"Total Deduplicated Percentage": "3", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "4", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "5", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "6", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "7", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "8", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "9", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">10", "99.98987609018297": "0.009998975115548148"}, {"Total Deduplicated Percentage": ">50", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">100", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">500", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">1k", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">5k", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">10k+", "99.98987609018297": "0.0"}], "adapter_content": [{"Position": "1", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.01, "PolyG": 0.0}, {"Position": "2", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.048, "PolyG": 0.0}, {"Position": "3", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0546666666666666, "PolyG": 0.0}, {"Position": "4", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0733333333333333, "PolyG": 0.0}, {"Position": "5", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.076, "PolyG": 0.0}, {"Position": "6", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0766666666666666, "PolyG": 0.0}, {"Position": "7", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.078, "PolyG": 0.0}, {"Position": "8", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0786666666666666, "PolyG": 0.0}, {"Position": "9", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0786666666666666, "PolyG": 0.0}, {"Position": "10-4999", "Illumina Universal Adapter": 0.0069213092852371, "Illumina Small RNA 3' Adapter": 0.0117088844355379, "Illumina Small RNA 5' Adapter": 0.003871476285905, "Nextera Transposase Sequence": 0.0304828323313294, "PolyA": 0.4074239144956564, "PolyG": 0.041746693386773}, {"Position": "5000-9999", "Illumina Universal Adapter": 0.0214165333333322, "Illumina Small RNA 3' Adapter": 0.0289847999999992, "Illumina Small RNA 5' Adapter": 0.0136545333333319, "Nextera Transposase Sequence": 0.0797818666666625, "PolyA": 1.3782287999999951, "PolyG": 0.112187199999999}, {"Position": "10000-14999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0152497333333319, "Nextera Transposase Sequence": 0.0898922666666719, "PolyA": 1.7913912000000154, "PolyG": 0.1257546666666673}, {"Position": "15000-19999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.8224974666667415, "PolyG": 0.1286317333333276}, {"Position": "20000-24999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825655199999897, "PolyG": 0.1286666666666609}, {"Position": "25000-29999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "30000-34999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "35000-39999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "40000-44999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "45000-49999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "50000-54999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "55000-59999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "60000-64999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "65000-69999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "70000-74999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "75000-79999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "80000-84999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "85000-89999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "90000-94999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "95000-99999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "100000-104999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "105000-109999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "110000-114999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "115000-119999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "120000-124999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "125000-129999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "130000-134999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "135000-139999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "140000-144999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "145000-149999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "150000-154999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "155000-159999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "160000-164999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "165000-169999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "170000-174999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "175000-179999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "180000-184999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "185000-189999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "190000-194999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "195000-199999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "200000-204999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "205000-208710", "Illumina Universal Adapter": 0.0259999999999997, "Illumina Small RNA 3' Adapter": 0.0306666666666647, "Illumina Small RNA 5' Adapter": 0.0153333333333323, "Nextera Transposase Sequence": 0.0913333333333354, "PolyA": 1.8260000000000205, "PolyG": 0.1286666666666718}]}]}, {"name": "html_report_path", "file_path": "tests/data/dummy/fastqc/fastqc_report.html", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": false}]

rev

line source

a7387ce2a8ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80

iuc

parents:

diff changeset

1 [{"analysis_software_version": "0.12.1", "reference_database_version": null, "analysis_software_name": "fastqc", "results": [{"name": "fastqc_report", "file_path": "tests/data/dummy/fastqc/fastqc_report.txt", "hid": "12345", "galaxy_id": null, "content": [{"basic_statistics": [{"Measure": "Filename", "Value": "SRR8335315_150M_fastq"}, {"Measure": "File type", "Value": "Conventional base calls"}, {"Measure": "Encoding", "Value": "Sanger / Illumina 1.9"}, {"Measure": "Total Sequences", "Value": "150000"}, {"Measure": "Total Bases", "Value": "1 Gbp"}, {"Measure": "Sequences flagged as poor quality", "Value": "0"}, {"Measure": "Sequence length", "Value": "5000-208721"}, {"Measure": "%GC", "Value": "49"}], "per_base_sequence_quality": [{"Base": "1", "Mean": 2.8365066666666667, "Median": 2.0, "Lower Quartile": 1.0, "Upper Quartile": 4.0, "10th Percentile": 1.0, "90th Percentile": 6.0}, {"Base": "2", "Mean": 5.008253333333333, "Median": 3.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "3", "Mean": 4.9963733333333336, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "4", "Mean": 5.492173333333334, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "5", "Mean": 5.953973333333333, "Median": 5.0, "Lower Quartile": 3.0, "Upper Quartile": 8.0, "10th Percentile": 1.0, "90th Percentile": 11.0}, {"Base": "6", "Mean": 5.105973333333333, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "7", "Mean": 6.98078, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 9.0, "10th Percentile": 2.0, "90th Percentile": 13.0}, {"Base": "8", "Mean": 7.78512, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 11.0, "10th Percentile": 2.0, "90th Percentile": 15.0}, {"Base": "9", "Mean": 9.664386666666667, "Median": 8.0, "Lower Quartile": 5.0, "Upper Quartile": 13.0, "10th Percentile": 3.0, "90th Percentile": 18.0}, {"Base": "10-4999", "Mean": 12.829364350033384, "Median": 11.984569138276552, "Lower Quartile": 6.997795591182364, "Upper Quartile": 17.925851703406813, "10th Percentile": 3.997995991983968, "90th Percentile": 22.98977955911824}, {"Base": "5000-9999", "Mean": 12.78321836605465, "Median": 11.9984, "Lower Quartile": 7.0, "Upper Quartile": 17.8802, "10th Percentile": 4.0, "90th Percentile": 23.0}, {"Base": "10000-14999", "Mean": 12.457365374925567, "Median": 11.4172, "Lower Quartile": 6.94, "Upper Quartile": 17.1414, "10th Percentile": 3.9632, "90th Percentile": 22.7734}, {"Base": "15000-19999", "Mean": 12.328473958980618, "Median": 11.2712, "Lower Quartile": 6.755, "Upper Quartile": 17.0012, "10th Percentile": 3.809, "90th Percentile": 22.425}, {"Base": "20000-24999", "Mean": 11.82052704708205, "Median": 10.740273037542662, "Lower Quartile": 6.310921501706485, "Upper Quartile": 16.367576791808872, "10th Percentile": 3.4976109215017064, "90th Percentile": 21.71706484641638}, {"Base": "25000-29999", "Mean": 10.868158810996196, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "30000-34999", "Mean": 8.860082551892548, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "35000-39999", "Mean": 8.747852380952377, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "40000-44999", "Mean": 9.24235, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "45000-49999", "Mean": 9.2681, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "50000-54999", "Mean": 9.858916666666673, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "55000-59999", "Mean": 8.900866666666667, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "60000-64999", "Mean": 8.3888, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "65000-69999", "Mean": 8.4588, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "70000-74999", "Mean": 8.2615, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "75000-79999", "Mean": 8.1645, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "80000-84999", "Mean": 8.4919, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "85000-89999", "Mean": 8.2781, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "90000-94999", "Mean": 8.7185, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "95000-99999", "Mean": 8.6579, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "100000-104999", "Mean": 8.2408, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "105000-109999", "Mean": 8.4248, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "110000-114999", "Mean": 8.695, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "115000-119999", "Mean": 9.1269, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "120000-124999", "Mean": 9.1556, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "125000-129999", "Mean": 8.9884, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "130000-134999", "Mean": 9.1352, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "135000-139999", "Mean": 8.5902, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "140000-144999", "Mean": 8.9054, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "145000-149999", "Mean": 9.1072, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "150000-154999", "Mean": 8.9374, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "155000-159999", "Mean": 8.9778, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "160000-164999", "Mean": 9.1418, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "165000-169999", "Mean": 9.1, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "170000-174999", "Mean": 8.825, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "175000-179999", "Mean": 9.0798, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "180000-184999", "Mean": 9.086, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "185000-189999", "Mean": 9.243, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "190000-194999", "Mean": 9.3418, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "195000-199999", "Mean": 8.6886, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "200000-204999", "Mean": 8.9724, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "205000-208721", "Mean": 8.934443847393874, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}], "per_sequence_quality_scores": [{"Quality": 6, "Count": 137.0}, {"Quality": 7, "Count": 83.0}, {"Quality": 8, "Count": 315.0}, {"Quality": 9, "Count": 713.0}, {"Quality": 10, "Count": 17339.0}, {"Quality": 11, "Count": 35124.0}, {"Quality": 12, "Count": 52936.0}, {"Quality": 13, "Count": 22175.0}, {"Quality": 14, "Count": 2989.0}, {"Quality": 15, "Count": 2807.0}, {"Quality": 16, "Count": 3385.0}, {"Quality": 17, "Count": 4515.0}, {"Quality": 18, "Count": 5029.0}, {"Quality": 19, "Count": 2257.0}, {"Quality": 20, "Count": 188.0}, {"Quality": 21, "Count": 8.0}], "per_base_sequence_content": [{"Base": "1", "G": 4.296666666666667, "A": 33.91133333333333, "T": 14.367333333333333, "C": 47.42466666666667}, {"Base": "2", "G": 14.108666666666666, "A": 8.154, "T": 37.97533333333333, "C": 39.762}, {"Base": "3", "G": 66.384, "A": 18.305333333333333, "T": 9.292, "C": 6.018666666666666}, {"Base": "4", "G": 26.55666666666667, "A": 14.106, "T": 55.059333333333335, "C": 4.278}, {"Base": "5", "G": 12.635333333333335, "A": 13.586666666666666, "T": 66.95466666666667, "C": 6.823333333333332}, {"Base": "6", "G": 39.42533333333333, "A": 28.452, "T": 17.297333333333334, "C": 14.825333333333331}, {"Base": "7", "G": 17.63533333333333, "A": 7.803333333333333, "T": 43.79866666666667, "C": 30.762666666666664}, {"Base": "8", "G": 22.85, "A": 17.016666666666666, "T": 37.35666666666667, "C": 22.776666666666667}, {"Base": "9", "G": 15.648, "A": 5.405333333333333, "T": 35.742000000000004, "C": 43.20466666666667}, {"Base": "10-4999", "G": 25.032629926519707, "A": 25.026529058116232, "T": 25.05940788243153, "C": 24.88143313293253}, {"Base": "5000-9999", "G": 25.026564605357425, "A": 25.117699789958078, "T": 24.96846532067271, "C": 24.88727028401179}, {"Base": "10000-14999", "G": 24.998636583465142, "A": 25.082778861044677, "T": 25.06727486730548, "C": 24.85130968818469}, {"Base": "15000-19999", "G": 24.957521341264087, "A": 25.02588790414481, "T": 25.17200605421943, "C": 24.84458470037168}, {"Base": "20000-24999", "G": 24.54487262351789, "A": 25.01475688901418, "T": 26.216800893356364, "C": 24.223569594111574}, {"Base": "25000-29999", "G": 22.875343560026536, "A": 25.65902598193856, "T": 28.820455191648957, "C": 22.64517526638595}, {"Base": "30000-34999", "G": 22.91190288113749, "A": 24.342077911279254, "T": 32.31613520143017, "C": 20.42988400615308}, {"Base": "35000-39999", "G": 23.53886783786887, "A": 19.003329888620968, "T": 36.04700118651204, "C": 21.410801086998124}, {"Base": "40000-44999", "G": 24.587721041128557, "A": 20.27121001390821, "T": 35.063580369560896, "C": 20.077488575402345}, {"Base": "45000-49999", "G": 24.47, "A": 20.765, "T": 35.52, "C": 19.245}, {"Base": "50000-54999", "G": 22.197183098591548, "A": 21.295774647887324, "T": 38.37871674491392, "C": 18.1283255086072}, {"Base": "55000-59999", "G": 20.373440362970072, "A": 20.40834133147195, "T": 43.97522031236367, "C": 15.24299799319431}, {"Base": "60000-64999", "G": 21.16, "A": 19.22, "T": 43.6, "C": 16.02}, {"Base": "65000-69999", "G": 20.99, "A": 18.94, "T": 45.74, "C": 14.330000000000002}, {"Base": "70000-74999", "G": 20.91, "A": 20.02, "T": 43.55, "C": 15.52}, {"Base": "75000-79999", "G": 19.99, "A": 19.43, "T": 45.31, "C": 15.27}, {"Base": "80000-84999", "G": 20.25, "A": 19.66, "T": 45.69, "C": 14.4}, {"Base": "85000-89999", "G": 20.05, "A": 19.69, "T": 45.05, "C": 15.21}, {"Base": "90000-94999", "G": 19.93, "A": 18.86, "T": 47.14, "C": 14.07}, {"Base": "95000-99999", "G": 18.53, "A": 19.46, "T": 48.2, "C": 13.81}, {"Base": "100000-104999", "G": 21.18, "A": 19.42, "T": 44.77, "C": 14.63}, {"Base": "105000-109999", "G": 20.75, "A": 18.87, "T": 45.85, "C": 14.53}, {"Base": "110000-114999", "G": 18.83, "A": 18.61, "T": 48.36, "C": 14.2}, {"Base": "115000-119999", "G": 18.45438512105179, "A": 16.017316017316016, "T": 52.41301907968574, "C": 13.115279781946448}, {"Base": "120000-124999", "G": 17.7, "A": 15.22, "T": 55.46, "C": 11.62}, {"Base": "125000-129999", "G": 18.26, "A": 15.9, "T": 53.620000000000005, "C": 12.22}, {"Base": "130000-134999", "G": 19.02, "A": 14.96, "T": 54.04, "C": 11.98}, {"Base": "135000-139999", "G": 19.22, "A": 14.18, "T": 51.48, "C": 15.12}, {"Base": "140000-144999", "G": 17.14, "A": 15.56, "T": 52.94, "C": 14.36}, {"Base": "145000-149999", "G": 18.92, "A": 14.36, "T": 52.6, "C": 14.12}, {"Base": "150000-154999", "G": 19.4, "A": 14.08, "T": 54.0, "C": 12.52}, {"Base": "155000-159999", "G": 19.46, "A": 14.36, "T": 54.92, "C": 11.26}, {"Base": "160000-164999", "G": 17.66, "A": 15.3, "T": 53.3, "C": 13.74}, {"Base": "165000-169999", "G": 17.88, "A": 15.58, "T": 53.44, "C": 13.1}, {"Base": "170000-174999", "G": 20.08, "A": 13.38, "T": 52.02, "C": 14.52}, {"Base": "175000-179999", "G": 19.14, "A": 15.46, "T": 53.56, "C": 11.84}, {"Base": "180000-184999", "G": 19.14, "A": 14.4, "T": 54.28, "C": 12.18}, {"Base": "185000-189999", "G": 18.98, "A": 14.64, "T": 55.88, "C": 10.5}, {"Base": "190000-194999", "G": 18.7, "A": 15.76, "T": 54.76, "C": 10.78}, {"Base": "195000-199999", "G": 18.88, "A": 14.82, "T": 52.24, "C": 14.06}, {"Base": "200000-204999", "G": 19.6, "A": 14.14, "T": 53.080000000000005, "C": 13.18}, {"Base": "205000-208721", "G": 18.860827512090275, "A": 14.696399785061796, "T": 53.65394948952176, "C": 12.78882321332617}], "per_sequence_gc_content": [{"GC Content": 0, "Count": 0.0}, {"GC Content": 1, "Count": 0.0}, {"GC Content": 2, "Count": 0.0}, {"GC Content": 3, "Count": 0.0}, {"GC Content": 4, "Count": 0.0}, {"GC Content": 5, "Count": 0.0}, {"GC Content": 6, "Count": 0.0}, {"GC Content": 7, "Count": 0.0}, {"GC Content": 8, "Count": 0.0}, {"GC Content": 9, "Count": 0.0030211480362537}, {"GC Content": 10, "Count": 0.0}, {"GC Content": 11, "Count": 0.0}, {"GC Content": 12, "Count": 0.0}, {"GC Content": 13, "Count": 0.0}, {"GC Content": 14, "Count": 0.0}, {"GC Content": 15, "Count": 0.0}, {"GC Content": 16, "Count": 0.0}, {"GC Content": 17, "Count": 0.0}, {"GC Content": 18, "Count": 0.0}, {"GC Content": 19, "Count": 0.0}, {"GC Content": 20, "Count": 0.0}, {"GC Content": 21, "Count": 0.0109890109890109}, {"GC Content": 22, "Count": 0.0}, {"GC Content": 23, "Count": 0.0}, {"GC Content": 24, "Count": 0.0}, {"GC Content": 25, "Count": 0.0}, {"GC Content": 26, "Count": 0.0}, {"GC Content": 27, "Count": 0.0319535221496005}, {"GC Content": 28, "Count": 0.0140845070422535}, {"GC Content": 29, "Count": 0.0}, {"GC Content": 30, "Count": 0.1340405014464802}, {"GC Content": 31, "Count": 0.6515987240993016}, {"GC Content": 32, "Count": 4.365585435255064}, {"GC Content": 33, "Count": 8.07823071481413}, {"GC Content": 34, "Count": 8.102099195858269}, {"GC Content": 35, "Count": 7.376039428478657}, {"GC Content": 36, "Count": 7.751923323708468}, {"GC Content": 37, "Count": 10.77885794625118}, {"GC Content": 38, "Count": 13.90096796160248}, {"GC Content": 39, "Count": 16.88144315732909}, {"GC Content": 40, "Count": 19.242435425714486}, {"GC Content": 41, "Count": 20.759412312263024}, {"GC Content": 42, "Count": 23.75459958757026}, {"GC Content": 43, "Count": 30.76369586650474}, {"GC Content": 44, "Count": 38.71251785866784}, {"GC Content": 45, "Count": 53.01968771245176}, {"GC Content": 46, "Count": 78.24846612843099}, {"GC Content": 47, "Count": 107.9843877253144}, {"GC Content": 48, "Count": 151.45301841673114}, {"GC Content": 49, "Count": 225.22760967406697}, {"GC Content": 50, "Count": 302.3114753659073}, {"GC Content": 51, "Count": 349.9400019314715}, {"GC Content": 52, "Count": 328.4055662555808}, {"GC Content": 53, "Count": 258.19951647078744}, {"GC Content": 54, "Count": 156.96207917099116}, {"GC Content": 55, "Count": 79.11733522003487}, {"GC Content": 56, "Count": 43.08776821569676}, {"GC Content": 57, "Count": 20.466679103342795}, {"GC Content": 58, "Count": 6.582160143149255}, {"GC Content": 59, "Count": 4.06042097946794}, {"GC Content": 60, "Count": 2.3842483826977854}, {"GC Content": 61, "Count": 0.2201275800091451}, {"GC Content": 62, "Count": 0.0}, {"GC Content": 63, "Count": 0.0}, {"GC Content": 64, "Count": 0.0}, {"GC Content": 65, "Count": 0.0}, {"GC Content": 66, "Count": 0.0}, {"GC Content": 67, "Count": 0.0}, {"GC Content": 68, "Count": 0.0}, {"GC Content": 69, "Count": 0.0}, {"GC Content": 70, "Count": 0.0}, {"GC Content": 71, "Count": 0.0}, {"GC Content": 72, "Count": 0.0}, {"GC Content": 73, "Count": 0.0}, {"GC Content": 74, "Count": 0.0}, {"GC Content": 75, "Count": 0.0}, {"GC Content": 76, "Count": 0.0}, {"GC Content": 77, "Count": 0.0}, {"GC Content": 78, "Count": 0.0}, {"GC Content": 79, "Count": 0.0}, {"GC Content": 80, "Count": 0.0}, {"GC Content": 81, "Count": 0.0}, {"GC Content": 82, "Count": 0.0}, {"GC Content": 83, "Count": 0.0}, {"GC Content": 84, "Count": 0.0}, {"GC Content": 85, "Count": 0.0}, {"GC Content": 86, "Count": 0.0}, {"GC Content": 87, "Count": 0.0}, {"GC Content": 88, "Count": 0.0}, {"GC Content": 89, "Count": 0.0}, {"GC Content": 90, "Count": 0.0}, {"GC Content": 91, "Count": 0.0}, {"GC Content": 92, "Count": 0.0}, {"GC Content": 93, "Count": 0.0}, {"GC Content": 94, "Count": 0.0}, {"GC Content": 95, "Count": 0.0}, {"GC Content": 96, "Count": 0.0}, {"GC Content": 97, "Count": 0.0}, {"GC Content": 98, "Count": 0.0}, {"GC Content": 99, "Count": 0.0}, {"GC Content": 100, "Count": 0.0}], "per_base_n_content": [{"Base": "1", "N-Count": 0.0}, {"Base": "2", "N-Count": 0.0}, {"Base": "3", "N-Count": 0.0}, {"Base": "4", "N-Count": 0.0}, {"Base": "5", "N-Count": 0.0}, {"Base": "6", "N-Count": 0.0}, {"Base": "7", "N-Count": 0.0}, {"Base": "8", "N-Count": 0.0}, {"Base": "9", "N-Count": 0.0}, {"Base": "10-4999", "N-Count": 0.0}, {"Base": "5000-9999", "N-Count": 0.0}, {"Base": "10000-14999", "N-Count": 0.0}, {"Base": "15000-19999", "N-Count": 0.0}, {"Base": "20000-24999", "N-Count": 0.0}, {"Base": "25000-29999", "N-Count": 0.0}, {"Base": "30000-34999", "N-Count": 0.0}, {"Base": "35000-39999", "N-Count": 0.0}, {"Base": "40000-44999", "N-Count": 0.0}, {"Base": "45000-49999", "N-Count": 0.0}, {"Base": "50000-54999", "N-Count": 0.0}, {"Base": "55000-59999", "N-Count": 0.0}, {"Base": "60000-64999", "N-Count": 0.0}, {"Base": "65000-69999", "N-Count": 0.0}, {"Base": "70000-74999", "N-Count": 0.0}, {"Base": "75000-79999", "N-Count": 0.0}, {"Base": "80000-84999", "N-Count": 0.0}, {"Base": "85000-89999", "N-Count": 0.0}, {"Base": "90000-94999", "N-Count": 0.0}, {"Base": "95000-99999", "N-Count": 0.0}, {"Base": "100000-104999", "N-Count": 0.0}, {"Base": "105000-109999", "N-Count": 0.0}, {"Base": "110000-114999", "N-Count": 0.0}, {"Base": "115000-119999", "N-Count": 0.0}, {"Base": "120000-124999", "N-Count": 0.0}, {"Base": "125000-129999", "N-Count": 0.0}, {"Base": "130000-134999", "N-Count": 0.0}, {"Base": "135000-139999", "N-Count": 0.0}, {"Base": "140000-144999", "N-Count": 0.0}, {"Base": "145000-149999", "N-Count": 0.0}, {"Base": "150000-154999", "N-Count": 0.0}, {"Base": "155000-159999", "N-Count": 0.0}, {"Base": "160000-164999", "N-Count": 0.0}, {"Base": "165000-169999", "N-Count": 0.0}, {"Base": "170000-174999", "N-Count": 0.0}, {"Base": "175000-179999", "N-Count": 0.0}, {"Base": "180000-184999", "N-Count": 0.0}, {"Base": "185000-189999", "N-Count": 0.0}, {"Base": "190000-194999", "N-Count": 0.0}, {"Base": "195000-199999", "N-Count": 0.0}, {"Base": "200000-204999", "N-Count": 0.0}, {"Base": "205000-208721", "N-Count": 0.0}], "sequence_length_distribution": [{"Length": "5000-9999", "Count": 137977.0}, {"Length": "10000-14999", "Count": 10879.0}, {"Length": "15000-19999", "Count": 904.0}, {"Length": "20000-24999", "Count": 187.0}, {"Length": "25000-29999", "Count": 39.0}, {"Length": "30000-34999", "Count": 7.0}, {"Length": "35000-39999", "Count": 2.0}, {"Length": "40000-44999", "Count": 1.0}, {"Length": "45000-49999", "Count": 0.0}, {"Length": "50000-54999", "Count": 1.0}, {"Length": "55000-59999", "Count": 1.0}, {"Length": "60000-64999", "Count": 0.0}, {"Length": "65000-69999", "Count": 0.0}, {"Length": "70000-74999", "Count": 0.0}, {"Length": "75000-79999", "Count": 0.0}, {"Length": "80000-84999", "Count": 0.0}, {"Length": "85000-89999", "Count": 0.0}, {"Length": "90000-94999", "Count": 0.0}, {"Length": "95000-99999", "Count": 0.0}, {"Length": "100000-104999", "Count": 0.0}, {"Length": "105000-109999", "Count": 0.0}, {"Length": "110000-114999", "Count": 0.0}, {"Length": "115000-119999", "Count": 1.0}, {"Length": "120000-124999", "Count": 0.0}, {"Length": "125000-129999", "Count": 0.0}, {"Length": "130000-134999", "Count": 0.0}, {"Length": "135000-139999", "Count": 0.0}, {"Length": "140000-144999", "Count": 0.0}, {"Length": "145000-149999", "Count": 0.0}, {"Length": "150000-154999", "Count": 0.0}, {"Length": "155000-159999", "Count": 0.0}, {"Length": "160000-164999", "Count": 0.0}, {"Length": "165000-169999", "Count": 0.0}, {"Length": "170000-174999", "Count": 0.0}, {"Length": "175000-179999", "Count": 0.0}, {"Length": "180000-184999", "Count": 0.0}, {"Length": "185000-189999", "Count": 0.0}, {"Length": "190000-194999", "Count": 0.0}, {"Length": "195000-199999", "Count": 0.0}, {"Length": "200000-204999", "Count": 0.0}, {"Length": "205000-208722", "Count": 1.0}], "sequence_duplication_levels": [{"Total Deduplicated Percentage": "Duplication Level", "99.98987609018297": "Percentage of total"}, {"Total Deduplicated Percentage": "1", "99.98987609018297": "99.98775136045838"}, {"Total Deduplicated Percentage": "2", "99.98987609018297": "0.002249664426082111"}, {"Total Deduplicated Percentage": "3", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "4", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "5", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "6", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "7", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "8", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": "9", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">10", "99.98987609018297": "0.009998975115548148"}, {"Total Deduplicated Percentage": ">50", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">100", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">500", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">1k", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">5k", "99.98987609018297": "0.0"}, {"Total Deduplicated Percentage": ">10k+", "99.98987609018297": "0.0"}], "adapter_content": [{"Position": "1", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.01, "PolyG": 0.0}, {"Position": "2", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.048, "PolyG": 0.0}, {"Position": "3", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0546666666666666, "PolyG": 0.0}, {"Position": "4", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0733333333333333, "PolyG": 0.0}, {"Position": "5", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.076, "PolyG": 0.0}, {"Position": "6", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0766666666666666, "PolyG": 0.0}, {"Position": "7", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.078, "PolyG": 0.0}, {"Position": "8", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0786666666666666, "PolyG": 0.0}, {"Position": "9", "Illumina Universal Adapter": 0.0, "Illumina Small RNA 3' Adapter": 0.0, "Illumina Small RNA 5' Adapter": 0.0, "Nextera Transposase Sequence": 0.0, "PolyA": 0.0786666666666666, "PolyG": 0.0}, {"Position": "10-4999", "Illumina Universal Adapter": 0.0069213092852371, "Illumina Small RNA 3' Adapter": 0.0117088844355379, "Illumina Small RNA 5' Adapter": 0.003871476285905, "Nextera Transposase Sequence": 0.0304828323313294, "PolyA": 0.4074239144956564, "PolyG": 0.041746693386773}, {"Position": "5000-9999", "Illumina Universal Adapter": 0.0214165333333322, "Illumina Small RNA 3' Adapter": 0.0289847999999992, "Illumina Small RNA 5' Adapter": 0.0136545333333319, "Nextera Transposase Sequence": 0.0797818666666625, "PolyA": 1.3782287999999951, "PolyG": 0.112187199999999}, {"Position": "10000-14999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0152497333333319, "Nextera Transposase Sequence": 0.0898922666666719, "PolyA": 1.7913912000000154, "PolyG": 0.1257546666666673}, {"Position": "15000-19999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.8224974666667415, "PolyG": 0.1286317333333276}, {"Position": "20000-24999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825655199999897, "PolyG": 0.1286666666666609}, {"Position": "25000-29999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "30000-34999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "35000-39999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "40000-44999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "45000-49999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "50000-54999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "55000-59999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "60000-64999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "65000-69999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "70000-74999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "75000-79999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "80000-84999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "85000-89999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "90000-94999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "95000-99999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "100000-104999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "105000-109999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "110000-114999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "115000-119999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "120000-124999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "125000-129999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "130000-134999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "135000-139999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "140000-144999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "145000-149999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "150000-154999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "155000-159999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "160000-164999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "165000-169999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "170000-174999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "175000-179999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "180000-184999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "185000-189999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "190000-194999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "195000-199999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "200000-204999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3' Adapter": 0.0306666666666639, "Illumina Small RNA 5' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "205000-208710", "Illumina Universal Adapter": 0.0259999999999997, "Illumina Small RNA 3' Adapter": 0.0306666666666647, "Illumina Small RNA 5' Adapter": 0.0153333333333323, "Nextera Transposase Sequence": 0.0913333333333354, "PolyA": 1.8260000000000205, "PolyG": 0.1286666666666718}]}]}, {"name": "html_report_path", "file_path": "tests/data/dummy/fastqc/fastqc_report.html", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": false}]

Mercurial > repos > iuc > tooldistillator

annotate test-data/summarize/fastqc_output.json @ 2:a7387ce2a8ca draft