Mercurial > repos > iuc > tooldistillator
comparison test-data/amrfinderplus/AMRFinderPlus_Point_mutation_report.tsv @ 1:65a69de1e294 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 30f10306f4283140f7e54cfe1b8bc1f76f4ef834
| author | iuc |
|---|---|
| date | Fri, 24 May 2024 10:47:33 +0000 |
| parents | |
| children |
comparison
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| 0:6e868bf6c38e | 1:65a69de1e294 |
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| 1 Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node | |
| 2 NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 3 NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 4 NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 5 NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 6 NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 7 NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 8 NA contig_10_polypolish 345 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 9 NA contig_10_polypolish 345 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 10 NA contig_10_polypolish 345 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 11 NA contig_10_polypolish 416 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 12 NA contig_10_polypolish 416 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 13 NA contig_10_polypolish 416 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 14 NA contig_11_polypolish 1319 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 15 NA contig_11_polypolish 1319 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 16 NA contig_11_polypolish 1319 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 17 NA contig_11_polypolish 1390 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 18 NA contig_11_polypolish 1390 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 19 NA contig_11_polypolish 1390 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 20 NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 21 NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 22 NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 23 NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 24 NA contig_7_polypolish 39847 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 25 NA contig_7_polypolish 39847 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 26 NA contig_7_polypolish 39847 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 27 NA contig_7_polypolish 39918 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 28 NA contig_7_polypolish 39918 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 29 NA contig_7_polypolish 39918 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 30 NA contig_82_polypolish 31069 31987 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 31 NA contig_82_polypolish 31069 31987 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 32 NA contig_82_polypolish 31069 31987 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA | |
| 33 NA contig_82_polypolish 31069 32058 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 34 NA contig_82_polypolish 31069 32058 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA | |
| 35 NA contig_82_polypolish 31069 32058 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA |