Mercurial > repos > iuc > tooldistillator
diff test-data/amrfinderplus/AMRFinderPlus_Point_mutation_report.tsv @ 1:65a69de1e294 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 30f10306f4283140f7e54cfe1b8bc1f76f4ef834
author | iuc |
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date | Fri, 24 May 2024 10:47:33 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/amrfinderplus/AMRFinderPlus_Point_mutation_report.tsv Fri May 24 10:47:33 2024 +0000 @@ -0,0 +1,35 @@ +Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node +NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 345 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 345 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 345 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 416 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 416 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_10_polypolish 416 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1319 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1319 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1319 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1390 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1390 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_11_polypolish 1390 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39847 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39847 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39847 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39918 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39918 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_7_polypolish 39918 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 31987 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 31987 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 31987 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 32058 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 32058 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA +NA contig_82_polypolish 31069 32058 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA