Mercurial > repos > iuc > tooldistillator_summarize
view test-data/isescan/annotation.gff @ 4:24eec94e6dfc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 301f4d78613f8f6e120b5ed8b56bd5e084e99b13
| author | iuc |
|---|---|
| date | Thu, 17 Oct 2024 08:00:41 +0000 |
| parents | 05c1bcba20c9 |
| children |
line wrap: on
line source
##gff-version 3 contig00001 ISEScan insertion_sequence 104722 106001 . + . ID=contig00001_IS_1;family=IS21;cluster=IS21_259 contig00001 ISEScan terminal_inverted_repeat 104722 104735 . + . ID=contig00001_IS_1_TIR;parent=contig00001_IS_1 contig00001 ISEScan terminal_inverted_repeat 105988 106001 . + . ID=contig00001_IS_1_TIR;parent=contig00001_IS_1 contig00002 ISEScan insertion_sequence 179502 180572 . - . ID=contig00002_IS_1;family=IS200/IS605;cluster=IS200/IS605_96 contig00002 ISEScan insertion_sequence 210210 214514 . - . ID=contig00002_IS_2;family=IS21;cluster=IS21_288 contig00002 ISEScan terminal_inverted_repeat 210210 210236 . - . ID=contig00002_IS_2_TIR;parent=contig00002_IS_2 contig00002 ISEScan terminal_inverted_repeat 214488 214514 . - . ID=contig00002_IS_2_TIR;parent=contig00002_IS_2 contig00002 ISEScan insertion_sequence 252678 252900 . + . ID=contig00002_IS_3;family=IS30;cluster=IS30_241 contig00005 ISEScan insertion_sequence 54 3033 . + . ID=contig00005_IS_1;family=IS30;cluster=IS30_241 contig00005 ISEScan terminal_inverted_repeat 54 67 . + . ID=contig00005_IS_1_TIR;parent=contig00005_IS_1 contig00005 ISEScan terminal_inverted_repeat 3020 3033 . + . ID=contig00005_IS_1_TIR;parent=contig00005_IS_1 contig00005 ISEScan insertion_sequence 84142 85683 . - . ID=contig00005_IS_2;family=IS21;cluster=IS21_259 contig00005 ISEScan terminal_inverted_repeat 84142 84174 . - . ID=contig00005_IS_2_TIR;parent=contig00005_IS_2 contig00005 ISEScan terminal_inverted_repeat 85651 85683 . - . ID=contig00005_IS_2_TIR;parent=contig00005_IS_2 contig00008 ISEScan insertion_sequence 99798 99915 . - . ID=contig00008_IS_1;family=IS30;cluster=IS30_241 contig00010 ISEScan insertion_sequence 1 138 . - . ID=contig00010_IS_1;family=IS6;cluster=IS6_292 contig00010 ISEScan insertion_sequence 63216 65257 . - . ID=contig00010_IS_2;family=IS256;cluster=IS256_47 contig00010 ISEScan terminal_inverted_repeat 63216 63259 . - . ID=contig00010_IS_2_TIR;parent=contig00010_IS_2 contig00010 ISEScan terminal_inverted_repeat 65215 65257 . - . ID=contig00010_IS_2_TIR;parent=contig00010_IS_2 contig00010 ISEScan insertion_sequence 65906 67630 . + . ID=contig00010_IS_3;family=IS3;cluster=IS3_176 contig00010 ISEScan terminal_inverted_repeat 65906 65936 . + . ID=contig00010_IS_3_TIR;parent=contig00010_IS_3 contig00010 ISEScan terminal_inverted_repeat 67600 67630 . + . ID=contig00010_IS_3_TIR;parent=contig00010_IS_3 contig00010 ISEScan insertion_sequence 70798 72118 . + . ID=contig00010_IS_4;family=IS256;cluster=IS256_162 contig00010 ISEScan terminal_inverted_repeat 70798 70826 . + . ID=contig00010_IS_4_TIR;parent=contig00010_IS_4 contig00010 ISEScan terminal_inverted_repeat 72090 72118 . + . ID=contig00010_IS_4_TIR;parent=contig00010_IS_4 contig00010 ISEScan insertion_sequence 74315 76017 . + . ID=contig00010_IS_5;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408 contig00010 ISEScan terminal_inverted_repeat 74315 74360 . + . ID=contig00010_IS_5_TIR;parent=contig00010_IS_5 contig00010 ISEScan terminal_inverted_repeat 75974 76017 . + . ID=contig00010_IS_5_TIR;parent=contig00010_IS_5 contig00010 ISEScan insertion_sequence 81227 82564 . + . ID=contig00010_IS_6;family=IS256;cluster=IS256_162 contig00010 ISEScan terminal_inverted_repeat 81227 81253 . + . ID=contig00010_IS_6_TIR;parent=contig00010_IS_6 contig00010 ISEScan terminal_inverted_repeat 82538 82564 . + . ID=contig00010_IS_6_TIR;parent=contig00010_IS_6 contig00017 ISEScan insertion_sequence 93 1807 . + . ID=contig00017_IS_1;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408 contig00017 ISEScan terminal_inverted_repeat 93 102 . + . ID=contig00017_IS_1_TIR;parent=contig00017_IS_1 contig00017 ISEScan terminal_inverted_repeat 1798 1807 . + . ID=contig00017_IS_1_TIR;parent=contig00017_IS_1 contig00029 ISEScan insertion_sequence 15381 16432 . - . ID=contig00029_IS_1;family=IS30;cluster=IS30_241 contig00029 ISEScan terminal_inverted_repeat 15381 15402 . - . ID=contig00029_IS_1_TIR;parent=contig00029_IS_1 contig00029 ISEScan terminal_inverted_repeat 16411 16432 . - . ID=contig00029_IS_1_TIR;parent=contig00029_IS_1 contig00030 ISEScan insertion_sequence 23835 23952 . - . ID=contig00030_IS_1;family=IS30;cluster=IS30_241 contig00035 ISEScan insertion_sequence 7068 7978 . + . ID=contig00035_IS_1;family=IS3;cluster=IS3_61 contig00035 ISEScan terminal_inverted_repeat 7068 7091 . + . ID=contig00035_IS_1_TIR;parent=contig00035_IS_1 contig00035 ISEScan terminal_inverted_repeat 7955 7978 . + . ID=contig00035_IS_1_TIR;parent=contig00035_IS_1 contig00036 ISEScan insertion_sequence 1 117 . + . ID=contig00036_IS_1;family=IS30;cluster=IS30_241 contig00036 ISEScan insertion_sequence 1131 2606 . - . ID=contig00036_IS_2;family=IS3;cluster=IS3_97 contig00036 ISEScan terminal_inverted_repeat 1131 1154 . - . ID=contig00036_IS_2_TIR;parent=contig00036_IS_2 contig00036 ISEScan terminal_inverted_repeat 2583 2606 . - . ID=contig00036_IS_2_TIR;parent=contig00036_IS_2 contig00036 ISEScan insertion_sequence 6170 7474 . + . ID=contig00036_IS_3;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408 contig00036 ISEScan terminal_inverted_repeat 6170 6184 . + . ID=contig00036_IS_3_TIR;parent=contig00036_IS_3 contig00036 ISEScan terminal_inverted_repeat 7460 7474 . + . ID=contig00036_IS_3_TIR;parent=contig00036_IS_3 contig00036 ISEScan insertion_sequence 9125 10401 . - . ID=contig00036_IS_4;family=IS256;cluster=IS256_162 contig00036 ISEScan terminal_inverted_repeat 9125 9140 . - . ID=contig00036_IS_4_TIR;parent=contig00036_IS_4 contig00036 ISEScan terminal_inverted_repeat 10386 10401 . - . ID=contig00036_IS_4_TIR;parent=contig00036_IS_4 contig00036 ISEScan insertion_sequence 13800 15146 . - . ID=contig00036_IS_5;family=IS256;cluster=IS256_162 contig00036 ISEScan terminal_inverted_repeat 13800 13820 . - . ID=contig00036_IS_5_TIR;parent=contig00036_IS_5 contig00036 ISEScan terminal_inverted_repeat 15126 15146 . - . ID=contig00036_IS_5_TIR;parent=contig00036_IS_5 contig00043 ISEScan insertion_sequence 211 1174 . + . ID=contig00043_IS_1;family=IS256;cluster=IS256_162 contig00043 ISEScan terminal_inverted_repeat 211 230 . + . ID=contig00043_IS_1_TIR;parent=contig00043_IS_1 contig00043 ISEScan terminal_inverted_repeat 1155 1174 . + . ID=contig00043_IS_1_TIR;parent=contig00043_IS_1 contig00043 ISEScan insertion_sequence 5366 6174 . + . ID=contig00043_IS_2;family=IS6;cluster=IS6_292 contig00043 ISEScan terminal_inverted_repeat 5366 5383 . + . ID=contig00043_IS_2_TIR;parent=contig00043_IS_2 contig00043 ISEScan terminal_inverted_repeat 6157 6174 . + . ID=contig00043_IS_2_TIR;parent=contig00043_IS_2 contig00045 ISEScan insertion_sequence 1 117 . + . ID=contig00045_IS_1;family=IS30;cluster=IS30_241 contig00053 ISEScan insertion_sequence 261 1613 . + . ID=contig00053_IS_1;family=IS110;cluster=IS110_139 contig00053 ISEScan terminal_inverted_repeat 261 280 . + . ID=contig00053_IS_1_TIR;parent=contig00053_IS_1 contig00053 ISEScan terminal_inverted_repeat 1594 1613 . + . ID=contig00053_IS_1_TIR;parent=contig00053_IS_1 contig00056 ISEScan insertion_sequence 75 1478 . - . ID=contig00056_IS_1;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408 contig00056 ISEScan terminal_inverted_repeat 75 118 . - . ID=contig00056_IS_1_TIR;parent=contig00056_IS_1 contig00056 ISEScan terminal_inverted_repeat 1433 1478 . - . ID=contig00056_IS_1_TIR;parent=contig00056_IS_1 contig00057 ISEScan insertion_sequence 7 1510 . - . ID=contig00057_IS_1;family=IS3;cluster=IS3_97 contig00057 ISEScan terminal_inverted_repeat 7 25 . - . ID=contig00057_IS_1_TIR;parent=contig00057_IS_1 contig00057 ISEScan terminal_inverted_repeat 1492 1510 . - . ID=contig00057_IS_1_TIR;parent=contig00057_IS_1 contig00058 ISEScan insertion_sequence 1 1299 . - . ID=contig00058_IS_1;family=IS30;cluster=IS30_241 contig00058 ISEScan terminal_inverted_repeat 1 127 . - . ID=contig00058_IS_1_TIR;parent=contig00058_IS_1 contig00058 ISEScan terminal_inverted_repeat 1173 1299 . - . ID=contig00058_IS_1_TIR;parent=contig00058_IS_1 contig00059 ISEScan insertion_sequence 102 592 . + . ID=contig00059_IS_1;family=IS30;cluster=IS30_241 contig00059 ISEScan terminal_inverted_repeat 102 114 . + . ID=contig00059_IS_1_TIR;parent=contig00059_IS_1 contig00059 ISEScan terminal_inverted_repeat 580 592 . + . ID=contig00059_IS_1_TIR;parent=contig00059_IS_1 contig00062 ISEScan insertion_sequence 140 474 . - . ID=contig00062_IS_1;family=IS6;cluster=IS6_292 contig00062 ISEScan terminal_inverted_repeat 140 151 . - . ID=contig00062_IS_1_TIR;parent=contig00062_IS_1 contig00062 ISEScan terminal_inverted_repeat 463 474 . - . ID=contig00062_IS_1_TIR;parent=contig00062_IS_1 contig00070 ISEScan insertion_sequence 1 332 . - . ID=contig00070_IS_1;family=IS6;cluster=IS6_292 contig00076 ISEScan insertion_sequence 1 223 . - . ID=contig00076_IS_1;family=IS30;cluster=IS30_241 contig00079 ISEScan insertion_sequence 1 255 . - . ID=contig00079_IS_1;family=IS30;cluster=IS30_241 contig00083 ISEScan insertion_sequence 1 128 . + . ID=contig00083_IS_1;family=IS6;cluster=IS6_292 contig00083 ISEScan insertion_sequence 135 255 . + . ID=contig00083_IS_2;family=IS6;cluster=IS6_292 contig00085 ISEScan insertion_sequence 1 255 . + . ID=contig00085_IS_1;family=IS30;cluster=IS30_241 contig00090 ISEScan insertion_sequence 1 250 . - . ID=contig00090_IS_1;family=IS6;cluster=IS6_292 contig00093 ISEScan insertion_sequence 1 231 . - . ID=contig00093_IS_1;family=IS6;cluster=IS6_292 contig00094 ISEScan insertion_sequence 69 206 . + . ID=contig00094_IS_1;family=IS6;cluster=IS6_292 contig00096 ISEScan insertion_sequence 1 161 . - . ID=contig00096_IS_1;family=IS30;cluster=IS30_241 contig00097 ISEScan insertion_sequence 1 151 . - . ID=contig00097_IS_1;family=IS6;cluster=IS6_292 contig00098 ISEScan insertion_sequence 1 138 . + . ID=contig00098_IS_1;family=IS30;cluster=IS30_241