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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
author iuc
date Wed, 20 Nov 2024 22:30:36 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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1 <!DOCTYPE html>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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2 <html><head>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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3 <meta http-equiv="Content-Type" content="text/html;charset=ISO-8859-1" />
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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4 <title>trimAl v1.5.0 Summary</title>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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5 <style type="text/css" media="all">
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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6 #b { background-color: #3366ff; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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7 #r { background-color: #cc0000; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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8 #g { background-color: #33cc00; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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9 #p { background-color: #ff6666; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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10 #m { background-color: #cc33cc; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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11 #o { background-color: #ff9900; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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12 #c { background-color: #46C7C7; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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13 #y { background-color: #FFFF00; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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14 .sel { background-color: #B9B9B9; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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15 .nsel { background-color: #E9E9E9; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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16 .c1 { background-color: #FFFBF2; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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17 .c2 { background-color: #FFF8CC; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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18 .c3 { background-color: #FAF0BE; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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19 .c4 { background-color: #F0EAD6; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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20 .c5 { background-color: #F3E5AB; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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21 .c6 { background-color: #F4C430; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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22 .c7 { background-color: #C2B280; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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23 .c8 { background-color: #DAA520; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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24 .c9 { background-color: #B8860B; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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25 .c10 { background-color: #918151; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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26 .c11 { background-color: #967117; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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27 .c12 { background-color: #6E5411; color: white; }
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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28 </style>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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29 </head>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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31 <body>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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32 <pre>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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33 <span class=sel>Selected Sequences: 6 /Selected Residues: 19</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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34 <span class=nsel>Deleted Sequences: 0 /Deleted Residues: 41</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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36 Gaps Scores: <span class=c1> =0= </span><span class=c2> <.001 </span><span class=c3> <.050 </span><span class=c4> <.100 </span><span class=c5> <.150 </span><span class=c6> <.200 </span><span class=c7> <.250 </span><span class=c8> <.350 </span><span class=c9> <.500 </span><span class=c10> <.750 </span><span class=c11> <1.00 </span><span class=c12> =1= </span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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37 Similarity Scores: <span class=c1> =0= </span><span class=c2> <1e-6 </span><span class=c3> <1e-5 </span><span class=c4> <1e-4 </span><span class=c5> <.001 </span><span class=c6> <.010 </span><span class=c7> <.100 </span><span class=c8> <.250 </span><span class=c9> <.500 </span><span class=c10> <.750 </span><span class=c11> <1.00 </span><span class=c12> =1= </span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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39 10 20 30 40 50 60
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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40 =========+=========+=========+=========+=========+=========+
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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41 <span class=sel>Sp17</span> --------FAYTA<span id=y>P</span>D---L<span id=b>L</span><span id=b>L</span>I<span id=o>G</span><span id=b>F</span><span id=b>L</span><span id=b>L</span>K<span id=g>T</span>V<span id=b>A</span>-T-<span id=b>F</span><span id=o>G</span>--DT<span id=b>W</span><span id=b>F</span>-----Q<span id=b>L</span><span id=b>W</span>Q<span id=o>G</span><span id=b>L</span><span id=m>D</span><span id=b>L</span><span id=g>N</span>K<span id=b>M</span><span id=y>P</span><span id=b>V</span><span id=b>F</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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42 <span class=sel>Sp10</span> ----------D<span id=y>P</span>A<span id=b>V</span><span id=b>L</span>----<span id=b>F</span><span id=b>V</span>--<span id=b>I</span><span id=b>M</span><span id=b>L</span><span id=o>G</span><span id=g>T</span>I<span id=g>T</span>-K-<span id=b>F</span><span id=g>S</span>--SE<span id=b>W</span><span id=b>F</span>-----F<span id=b>A</span><span id=b>W</span>L<span id=o>G</span><span id=b>L</span><span id=m>E</span><span id=b>I</span><span id=g>N</span><span id=b>M</span><span id=b>M</span><span id=b>V</span><span id=b>I</span><span id=b>I</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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43 <span class=sel>Sp8</span> ----------<span id=o>G</span>L<span id=o>G</span>K<span id=b>V</span>---I<span id=b>V</span><span id=c>Y</span>-<span id=o>G</span><span id=b>I</span><span id=b>V</span><span id=b>L</span><span id=o>G</span><span id=g>T</span>KS-DQ<span id=b>F</span><span id=g>S</span>NWVV<span id=b>W</span><span id=b>L</span>-----F<span id=y>P</span><span id=b>W</span>N<span id=o>G</span><span id=b>L</span><span id=g>Q</span><span id=b>I</span>H<span id=b>M</span><span id=b>M</span><span id=o>G</span><span id=b>I</span><span id=b>I</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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44 <span class=sel>Sp33</span> -----------<span id=y>P</span>T<span id=b>I</span><span id=b>L</span>---N<span id=b>I</span><span id=b>A</span>-<span id=o>G</span><span id=b>L</span><span id=c>H</span><span id=b>M</span>E<span id=g>T</span>D<span id=b>I</span>-N-<span id=b>F</span><span id=g>S</span>--LA<span id=b>W</span><span id=b>F</span>-----Q<span id=b>A</span><span id=b>W</span><span id=o>G</span><span id=o>G</span><span id=b>L</span><span id=m>E</span><span id=b>I</span><span id=g>N</span>KQ<span id=b>A</span><span id=b>I</span><span id=b>L</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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45 <span class=sel>Sp6</span> ----------AS<span id=o>G</span><span id=b>A</span><span id=b>I</span>---L<span id=g>T</span><span id=b>L</span>-<span id=o>G</span><span id=b>I</span><span id=c>Y</span><span id=b>L</span>F<span id=g>T</span>L<span id=b>C</span>-AV<span id=b>I</span><span id=g>S</span>--VS<span id=b>W</span><span id=c>Y</span>-----L<span id=b>A</span><span id=b>W</span>L<span id=o>G</span><span id=b>L</span><span id=m>E</span><span id=b>I</span><span id=g>N</span><span id=b>M</span><span id=b>M</span><span id=b>A</span><span id=b>I</span><span id=b>I</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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46 <span class=sel>Sp26</span> AAAAAAAA----A<span id=b>L</span><span id=b>L</span>---T<span id=c>Y</span><span id=b>L</span>-<span id=o>G</span><span id=b>L</span><span id=b>F</span><span id=b>L</span><span id=o>G</span><span id=g>T</span>D<span id=c>Y</span>-----EN---<span id=b>F</span>AAAAAN<span id=b>A</span><span id=b>W</span>L<span id=o>G</span><span id=b>L</span><span id=m>E</span><span id=b>I</span><span id=g>N</span><span id=b>M</span><span id=b>M</span><span id=b>A</span>Q<span id=b>I</span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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48 Selected Cols: <span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=nsel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span><span class=sel> </span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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50 Gaps Scores: <span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c10> </span><span class=c11> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c11> </span><span class=c12> </span><span class=c12> </span><span class=c6> </span><span class=c11> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c1> </span><span class=c11> </span><span class=c8> </span><span class=c11> </span><span class=c11> </span><span class=c8> </span><span class=c8> </span><span class=c11> </span><span class=c11> </span><span class=c11> </span><span class=c12> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c6> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span><span class=c12> </span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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51 Similarity Scores: <span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c2> </span><span class=c4> </span><span class=c5> </span><span class=c4> </span><span class=c5> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c4> </span><span class=c4> </span><span class=c5> </span><span class=c1> </span><span class=c12> </span><span class=c6> </span><span class=c4> </span><span class=c8> </span><span class=c4> </span><span class=c12> </span><span class=c3> </span><span class=c3> </span><span class=c1> </span><span class=c4> </span><span class=c2> </span><span class=c7> </span><span class=c7> </span><span class=c5> </span><span class=c2> </span><span class=c4> </span><span class=c4> </span><span class=c12> </span><span class=c6> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c1> </span><span class=c3> </span><span class=c5> </span><span class=c12> </span><span class=c3> </span><span class=c12> </span><span class=c12> </span><span class=c7> </span><span class=c8> </span><span class=c7> </span><span class=c5> </span><span class=c7> </span><span class=c5> </span><span class=c6> </span><span class=c6> </span>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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52 </pre>
e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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e379c0202766 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal commit f6575973c143041bfbcb8afa12077c77e65e91a5
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