Mercurial > repos > iuc > trinity_abundance_estimates_to_matrix

changeset 7:34cefa17a764 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 6d3a6d130b58b15190bf286b9840caa162a2bea1
author iuc
date Thu, 14 Dec 2017 10:24:04 -0500
parents 74217fbfba4d
children 850cf1fccd69
files abundance_estimates_to_matrix.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/abundance_estimates_to_matrix.xml	Mon Aug 28 16:55:13 2017 -0400
+++ b/abundance_estimates_to_matrix.xml	Thu Dec 14 10:24:04 2017 -0500
@@ -1,12 +1,11 @@
-<tool id="trinity_abundance_estimates_to_matrix" name="Build expression matrix" version="@WRAPPER_VERSION@.1">
+<tool id="trinity_abundance_estimates_to_matrix" name="Build expression matrix" version="@WRAPPER_VERSION@.2">
     <description>for a de novo assembly of RNA-Seq data by Trinity</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="3.16.5">bioconductor-edger</requirement>
-        <!-- Cannot update to salmon 0.8.2 because in Bioconda it requires icu 58, while r-base 3.3.1 requires icu 54 -->
-        <requirement type="package" version="0.8.1">salmon</requirement>
+        <requirement type="package" version="3.20.1">bioconductor-edger</requirement>
+        <requirement type="package" version="0.9.1">salmon</requirement>
         <requirement type="package" version="0.43.1">kallisto</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[