Mercurial > repos > iuc > trinity_align_and_estimate_abundance

changeset 11:aed859a021c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1
author iuc
date Thu, 23 Aug 2018 12:54:49 -0400
parents afd41a430a76
children 478f36effca1
files align_and_estimate_abundance.xml macros.xml
diffstat 2 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/align_and_estimate_abundance.xml	Thu Jun 14 03:11:22 2018 -0400
+++ b/align_and_estimate_abundance.xml	Thu Aug 23 12:54:49 2018 -0400
@@ -6,7 +6,6 @@
     <expand macro="requirements">
         <requirement type="package" version="1.3.0">rsem</requirement>
         <requirement type="package" version="1.5.1">express</requirement>
-        <requirement type="package" version="0.9.1">salmon</requirement>
         <requirement type="package" version="0.43.1">kallisto</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[
--- a/macros.xml	Thu Jun 14 03:11:22 2018 -0400
+++ b/macros.xml	Thu Aug 23 12:54:49 2018 -0400
@@ -2,12 +2,12 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.6.6">trinity</requirement>
+            <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement>
             <yield/>
         </requirements>
     </xml>
 
-    <token name="@WRAPPER_VERSION@">2.6.6</token>
+    <token name="@WRAPPER_VERSION@">2.8.3</token>
 
     <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
         #if $pool.inputs.strand.is_strand_specific:
@@ -28,7 +28,7 @@
                 </param>
             </when>
         </conditional>
-        <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
+        <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
     </xml>
 
     <xml name="citation">