Mercurial > repos > iuc > trinity_define_clusters_by_cutting_tree
comparison define_clusters_by_cutting_tree.xml @ 2:cd71eff81169 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933
| author | iuc |
|---|---|
| date | Fri, 31 Mar 2017 11:36:26 -0400 |
| parents | acff96adcbec |
| children | b99f4e461291 |
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| 1:e4f348d88ae7 | 2:cd71eff81169 |
|---|---|
| 2 <description>after differential expression analysis using a Trinity assembly</description> | 2 <description>after differential expression analysis using a Trinity assembly</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
| 7 <requirement type="package" version="2.30.0">bioconductor-biobase</requirement> | 7 <requirement type="package" version="2.34.0">bioconductor-biobase</requirement> |
| 8 </expand> | 8 </expand> |
| 9 <expand macro="stdio"/> | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 <command><![CDATA[ | |
| 11 | 10 |
| 12 define_clusters_by_cutting_tree.pl | 11 define_clusters_by_cutting_tree.pl |
| 13 | 12 |
| 14 -R '${rdata}' | 13 -R '${rdata}' |
| 15 | 14 |
| 70 </conditional> | 69 </conditional> |
| 71 <output_collection name="expression_matrices"> | 70 <output_collection name="expression_matrices"> |
| 72 <element name="subcluster_1_log2_medianCentered_fpkm.matrix" compare="sim_size" file="count/define_clusters_by_cutting_tree/subcluster_1_log2_medianCentered_fpkm.matrix"/> | 71 <element name="subcluster_1_log2_medianCentered_fpkm.matrix" compare="sim_size" file="count/define_clusters_by_cutting_tree/subcluster_1_log2_medianCentered_fpkm.matrix"/> |
| 73 <element name="subcluster_2_log2_medianCentered_fpkm.matrix" compare="sim_size" file="count/define_clusters_by_cutting_tree/subcluster_2_log2_medianCentered_fpkm.matrix"/> | 72 <element name="subcluster_2_log2_medianCentered_fpkm.matrix" compare="sim_size" file="count/define_clusters_by_cutting_tree/subcluster_2_log2_medianCentered_fpkm.matrix"/> |
| 74 </output_collection> | 73 </output_collection> |
| 75 <output name="rdata" delta="100" compare="sim_size" file="count/define_clusters_by_cutting_tree/my_cluster_plots.pdf"/> | 74 <output name="cluster_plots" delta="100" compare="sim_size" file="count/define_clusters_by_cutting_tree/my_cluster_plots.pdf"/> |
| 76 </test> | 75 </test> |
| 77 </tests> | 76 </tests> |
| 78 <help> | 77 <help> |
| 79 <![CDATA[ | 78 <![CDATA[ |
| 80 Trinity_ assembles transcript sequences from Illumina RNA-Seq data. | 79 Trinity_ assembles transcript sequences from Illumina RNA-Seq data. |