Mercurial > repos > iuc > trinity_gene_to_trans_map

comparison test-data/count/trinityStats/statsfile.txt @ 20:7c7fbf13aadd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
author iuc
date Tue, 08 Aug 2023 09:04:29 +0000
parents
children
comparison
equal deleted inserted replaced
19:ba460ccf0006 20:7c7fbf13aadd
1
2
3 ################################
4 ## Counts of transcripts, etc.
5 ################################
6 Total trinity 'genes': 7
7 Total trinity transcripts: 7
8 Percent GC: 42.12
9
10 ########################################
11 Stats based on ALL transcript contigs:
12 ########################################
13
14 Contig N10: 541
15 Contig N20: 541
16 Contig N30: 380
17 Contig N40: 380
18 Contig N50: 279
19
20 Median contig length: 240
21 Average contig: 298.14
22 Total assembled bases: 2087
23
24
25 #####################################################
26 ## Stats based on ONLY LONGEST ISOFORM per 'GENE':
27 #####################################################
28
29 Contig N10: 541
30 Contig N20: 541
31 Contig N30: 380
32 Contig N40: 380
33 Contig N50: 279
34
35 Median contig length: 240
36 Average contig: 298.14
37 Total assembled bases: 2087
38
39
40