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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainnet commit 89f973d7c4d89281b2773768202459b31a114087
author iuc
date Mon, 30 Jun 2025 10:51:06 +0000
parents 3a213e01bc7f
children
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##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
net mm39.chr2:136351215-137822786 1471571
 fill 42266 172 hg38.chr20:10004760-11615810 + 49202 176 id 13 score 4568 ali 172
 fill 87101 168 hg38.chr20:10004760-11615810 + 87669 167 id 7 score 6916 ali 167
 fill 87751 136 hg38.chr20:10004760-11615810 + 84589 137 id 6 score 6961 ali 136
 fill 158262 69 hg38.chr20:10004760-11615810 + 148667 69 id 15 score 2152 ali 68
 fill 244295 318 hg38.chr20:10004760-11615810 - 266744 261 id 3 score 13332 ali 256
  gap 244343 47 hg38.chr20:10004760-11615810 - 266919 70
 fill 258580 88 hg38.chr20:10004760-11615810 + 288132 88 id 9 score 5958 ali 88
 fill 260289 312 hg38.chr20:10004760-11615810 + 288278 276 id 4 score 9256 ali 268
 fill 260754 161 hg38.chr20:10004760-11615810 + 288114 161 id 5 score 8091 ali 161
 fill 546215 130 hg38.chr20:10004760-11615810 + 600994 130 id 8 score 5978 ali 130
 fill 579921 120 hg38.chr20:10004760-11615810 + 640387 120 id 14 score 3681 ali 120
 fill 722616 101 hg38.chr20:10004760-11615810 + 796556 102 id 10 score 5873 ali 101
 fill 821044 1970 hg38.chr20:10004760-11615810 - 879848 2177 id 2 score 64329 ali 1889
 fill 824476 150 hg38.chr20:10004760-11615810 - 890884 148 id 11 score 5421 ali 148
 fill 1342678 120 hg38.chr20:10004760-11615810 + 1425778 120 id 12 score 4864 ali 120