Mercurial > repos > iuc > ucsc_chainsort
changeset 1:5815f5bd9ac8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort commit 303002db06287fb25306020c4391626842f52162
| author | iuc |
|---|---|
| date | Sun, 22 Sep 2024 07:27:14 +0000 |
| parents | fff37ce2d95d |
| children | c953dbade109 |
| files | chainsort.xml |
| diffstat | 1 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/chainsort.xml Mon Aug 26 13:54:24 2024 +0000 +++ b/chainsort.xml Sun Sep 22 07:27:14 2024 +0000 @@ -43,12 +43,16 @@ <help><![CDATA[ **What it does** -`chainSort`_ is a tool to sort chains. +`chainSort`_ is a tool to sort `chains`_. Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort. +For implementation details see chainSort's `source code`_. + .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt - ]]> </help> +.. _chains: https://genome.ucsc.edu/goldenPath/help/chain.html +.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/chainSort/chainSort.c +]]> </help> <citations> <citation type="doi">10.1093/bib/bbs038</citation> </citations>