Mercurial > repos > iuc > ucsc_mafcoverage
annotate test-data/malformed.maf @ 0:2b1884fdb849 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
| author | iuc |
|---|---|
| date | Thu, 14 Aug 2025 11:59:27 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
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0
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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1 ##maf version=1 scoring=example |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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2 a score=1000.0 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
3 s human.chr1 100 10 + 1000 ACGTACGTAC |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
4 s mouse.chr1 200 10 + 2000 ACGTACGTAC |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
5 s dog.chr1 300 10 + 3000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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6 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
7 a score=500.0 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
8 s human.chr2 150 5 + 1000 ACGTA |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
9 s mouse.chr2 250 5 + 2000 ACGT- |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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10 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
11 a score=200.0 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
12 s human.chr3 200 15 + 1000 ACGTACGTACGTACG |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
13 s cat.chr3 350 15 + 4000 ACGTACGTACGTACG |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
14 s dog.chr3 450 15 + 5000 ACGTACGTACGTACG |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
15 s rat.chr3 550 15 + 6000 ACGTACGTACGTACG |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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16 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
17 a score=50.0 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
18 s human.chr4 110 10 + 1000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
19 s mouse.chr4 210 10 + 2000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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20 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
21 a score=3000.0 |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
22 s human.chr5 105 10 + 1000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
23 s mouse.chr5 205 10 + 2000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
24 s dog.chr5 305 10 + 3000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
25 s cat.chr5 405 10 + 4000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
26 s rat.chr5 505 10 + 5000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
27 s cow.chr5 605 10 + 6000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
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28 |
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2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
29 a score=600.0 |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
30 s human.chr6 100 10 + 1000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
31 s mouse.chr6 200 10 + 2000 ACGTACGTAC |
|
2b1884fdb849
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
iuc
parents:
diff
changeset
|
32 s dog.chr6 |