annotate test-data/mafFetch.maf @ 0:2b1884fdb849 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e

##maf version=1
##maf version=1 scoring=autoMZ.v1
a score=3796057.000000
s hg19.chr17                        7578364 116 +  81195210 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T
s xenTro2.scaffold_440                77711 119 +   1031938 ---GATT---ACCA---TCCCCTGGC-TCCACG--CTGCGCTC-ATGGTGGGGG-CACCTCTTGACCACCTCGGCCACGTGCTCGGATTTCTT-GTACAC-GGC----CGTAGCCCGGAGAA---TGGAGCCGAGCGGCGG------G
i xenTro2.scaffold_440            I 804 C 0
s ornAna1.Contig14337                  7793 116 +     24454 CC---TC---ACCG---TCACCG----TCGGAA--GAGCGCTC-GTGGTGGGGG-CACCTCTTCACCACCTCGGCCCTGTGGTCGGTCTTCTT-GTAGAC-GGC----CATggcccggaccc---gggcccccggcggggg------c
i ornAna1.Contig14337             C 0 C 0
s macEug1.Scaffold144598              15841 104 -     16042 GC---TC---A-------------------GTG--CATCGTTC-ATGGTGGGGA-CAGCGCTTAACCACCTCAGTCATGTGTTCTGACTTCTT-ATAAAT-AGC----CATAGCGCGAACTC---GGGCACCAGCAGGTGG------T
i macEug1.Scaffold144598          C 0 C 0
s dasNov2.scaffold_2289               70843 119 +    182311 CC---TC---ACCA---TCCCCATGT-TCTGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTCGGACTTCTT-GTAGAC-AGC----CATGGCCCGGACGC---GGGCCCCAGGAGGGGG------T
i dasNov2.scaffold_2289           C 0 C 0
s proCap1.scaffold_6241               18925 119 +     60317 CC---TC---ACCA---TCGTTATAG-TCAGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCTTCACAACCTCTGTCATGTGCTCTGACTTCTT-GTAGAT-GGC----CATGGTGCGAACAC---AGGTGCCTGGCGGGGG------T
i proCap1.scaffold_6241           C 0 C 0
s loxAfr3.scaffold_47              11692611 119 +  18382006 CC---TC---ACCA---TCGCTAGAG-TCAGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCTTGACGACCTCCGTCATATGCTCTGACTTCTT-GTAGAT-GGC----CATGGTGCGAACAC---GGGTGCCGGGCGGGGG------T
i loxAfr3.scaffold_47             C 0 C 0
s sorAra1.scaffold_223295              4340 119 -      5675 AC---GC---ACCG---TCATTATAG-TCAGAG--CAGCGCTC-GTGGTGCGGG-CAGCGCCGCACCACTTCTGTCATATACTCGGATTTCTT-GTAGAT-GGC----CATGGCACGGACTC---GTGCGCCCTGTGGGGG------T
i sorAra1.scaffold_223295         C 0 C 0
s eriEur1.scaffold_369359               787 116 +     53529 TC---TC---ACCA---TCATTGCAG-TCCG-----AGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCTGTCATATGCTCTGACTTCTT-GTAGAT-GGC----CATGGCGCGAACAT---GGCTACCCATTGGTGG------T
i eriEur1.scaffold_369359         C 0 C 0
s pteVam1.scaffold_3215               83447 124 +    151245 -CACTTC---ACCA---TCGCTATAATTCTGGA--CAGCGTTC-ATGGTGGGGGCCAGCGCCTCACCACCTCTGTCATGTCCTCAGATTTCTT-GAATATGGGC----CATGTCTCGGACAC---GGGTGCCAAGTGGGGG------T
i pteVam1.scaffold_3215           C 0 M 669
s felCat3.scaffold_213592            202966 119 +    335748 GC---TC---ACCA---TCGCTACTG-TCAGGG--CAGCGCTC-GTGGTGGGGA-CAGCGCCTCACGACCTCTGTCATGAACTCTGACTTCTT-ATAAAT-GGC----CATGGCGCGGACAC---AGGTTCCCGGTGGGGG------C
i felCat3.scaffold_213592         C 0 C 0
s canFam2.chr5                     35559471 119 +  91976430 GC---TT---ACCG---TCACTACTG-TCAGAG--CAGCGTTC-ATGGTGGGGG-CAGCGCCGCACAACCTCGGTCACGAACTCCGACTTCTT-ATAGAT-GGC----CATAGCGCGGACGC---AGGTATTGGGTGGGGG------T
i canFam2.chr5                    C 0 C 0
s equCab2.chr11                    50614770 119 +  61308211 AC---TC---ACCA---TCGCTACTG-TCAGAG--CAGCGTTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGAACTCTGACTTCTT-GTAGAT-GGC----CATGGCCCGGACAC---GGGTGCCGGGTGGGGG------T
i equCab2.chr11                   C 0 C 0
s myoLuc1.scaffold_182347             10113 118 +     17583 -C---TC---ACCG---TCACTATAG-TCAGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCGCACGACCTCCGTCATGTGCTCGGACTTCTT-GTAGAT-GGC----CATGGCACGGACCC---GGGAGCTGAGCGGGGG------T
i myoLuc1.scaffold_182347         C 0 C 0
s bosTau4.chr19                    27882876 119 +  65312493 GC---TC---ACCA---TCGCTATAG-TCAGAG--GAGCGCTC-ATGGTGGGGA-CAACGCCTCACAACCTCCGTCATGTGCTCCAACTTCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T
i bosTau4.chr19                   C 0 C 0
s turTru1.scaffold_109828            111640 119 +    563998 GC---TC---ACCG---TCGCTATAG-TCAGAG--CAGCGCTC-ATGGTGGGGA-CAGCGCCTCACAACCTCCGTCATGTACTCTGACTTCTT-ATAGAT-GGC----CATGGCGCGGACCC---GGGTGCCGGGCGGGGG------T
i turTru1.scaffold_109828         C 0 C 0
s ochPri2.scaffold_2885               39191 116 +    176626 AC---TC---ACCA---TCGCTA----TCCGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCTTCACAATCTCGGTCACATGCTGCGACTTCTT-GTAGAT-GGC----CATGGCCCGCACGC---GGGTGCCAGGCGGGGG------T
i ochPri2.scaffold_2885           C 0 C 0
s oryCun2.chr19                    45751305 116 -  57279966 AC---TC---ACCA---TCGCTG----TCGGAG--CAGCGCTC-GTGGTGGGGG-CAGCGTCTGACAACTTCCGTCATGTGCTGAGACTTCTT-GTAGAT-GGC----CATGGCCCGGACGC---GGCTGCCAGGCGGGGG------C
i oryCun2.chr19                   C 0 C 0
s cavPor3.scaffold_61               1734708 116 -  10725151 AC---TC---ACCA---TCACTA----TCGGAA--CAGCGCTC-GTGATGGGGG-CAGCGTCTCACCACCTCCGTCATGTGCTGTGACTTCTT-GTAGAT-GGC----CAGGGCACGGACTC---GGGTGCCAGGTGGGGG------T
i cavPor3.scaffold_61             C 0 C 0
s rn4.chr10                        54310678 116 - 110718848 GC---TC---ACCG---TCACCA----TCAGAG--CAACGCTC-ATGGTGGGGG-CAGCGTCTCACGACCTCAGTCATGTGTTGTGACTTCTT-GTAGAT-GGC----CATGGCACGGACAC---GGGTACCAGGTGGAGG------T
i rn4.chr10                       C 0 C 0
s mm9.chr11                        52441801 116 - 121843856 GC---TT---ACCA---TCACCA----TCGGAG--CAGCGCTC-ATGGTGGGGG-CAGCGTCTCACGACCTCCGTCATGTGCTGTGACTTCTT-GTAGAT-GGC----CATGGCGCGGACAC---GGCTCCCAGCTGGAGG------T
i mm9.chr11                       C 0 C 0
s panTro2.chr17                     7856405 116 +  83384210 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGTGGGGG------T
i panTro2.chr17                   C 0 C 0
s gorGor1.Supercontig_0189236           487 116 +      3737 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-ATAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T
i gorGor1.Supercontig_0189236     C 0 C 0
s ponAbe2.chr17                     7682674 116 +  73212453 GC---TC---ACCA---TCACTA----TCTGAG--CAGCGCTC-ATGGTGGGGA-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGTGGGGG------T
i ponAbe2.chr17                   C 0 C 0
s rheMac2.chr16                     7405993 116 +  78773432 GC---TC---ACCA---TCGCTG----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGCTGCCGGGTGGGGG------T
i rheMac2.chr16                   C 0 C 0
s papHam1.scaffold7284                33446 116 +    103654 GC---TC---ACCA---TCGCTG----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGCTGCCGGGCGGGGG------T
i papHam1.scaffold7284            C 0 C 0
s calJac1.Contig2760                 258379 116 +    385592 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCACGTGGGGG------T
i calJac1.Contig2760              C 0 C 0
s tarSyr1.scaffold_121145               321 116 +      7117 AC---TC---ACCA---TCGCTA----TCTGAG--CAACGCTC-ATGGTGGGGG-CAGCGCCTTACCACCTCTGTCATGTATTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGCGGGGG------T
i tarSyr1.scaffold_121145         C 0 C 0
s micMur1.scaffold_3128              110288 116 +    169956 AC---TC---ACCA---TCGCTA----TCGGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGTTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGATGC---GGCTGCCTGGCGGGGG------C
i micMur1.scaffold_3128           C 0 C 0
s petMar1.Contig11049                  1942 117 +     16916 -----TT---ACCA---TCGTTGAAC-TCCTTG--GAGATCTC-GTGGTTGGGG-CACCGCTTTACGACCTCGGTCAGGTGGTCGGCCTTCTT-GTACAC-GGG----CATGGCACGCACTA---CGCAACCGGTCGGCAC------C
i petMar1.Contig11049             I 752 C 0
s danRer6.chr6                     30982895 119 -  61647013 ------GCATACCG---TCATTGAAC-TCTCTG--CTCAGCTC-GTGGTTCGGG-CATCGTTTGACCACCTCAGTAACATGCTCTGCTTTCTT-ATAGAC-AGG----CATGGCCCGTATGA---CTGCACCCTGGGGTGG------G
i danRer6.chr6                    C 0 C 0
s oryLat2.chr18                    15469404 116 -  29908082 ------G---TCTGTTTTCCTTACAG-TCCTCG--TT---TTG-GTGGTGGGGA-CACCTCCTCACCACGTCCGCCACGTGCTCCGTCTTCTT-GTAGAC-CGC----AGTGGCCCTGAGAA---TGGCGCCCTTTGGAGG------C
i oryLat2.chr18                   C 0 C 0
s gasAcu1.chrVIII                   1698226 116 -  19368704 ------G---ACCG---TCGTTGAAC-TCGCGG--CTGAGCTC-GTGGTTCGGG-CAGCGCTTCACCACCTCCGTCACGTGCTCCGCCTTCTT-GTAGAC-GGG----CATGGCCCGGATGA---CGGCGCCCTGCGGCGG------G
i gasAcu1.chrVIII                 C 0 C 0
s fr2.chrUn                       269239176 124 - 400509343 ----------GCTG---CCGTTTCTC-TTACAGTCCTCGTTTTGGTGGTGGGGG-CACCGGCGGACCACATCTGCCACGTGTTCGATCTTCTT-GTAAAT-GGC----TGTAGCCCTCAGGA---CGGCGCCCGCAGGAGGCTTCTTG
i fr2.chrUn                       C 0 C 0
s tetNig2.chr1                     12256769 114 -  22981688 -----------CCG---TCGTTGAAC-TCGCGG--CTCAGCTC-GTGGTTCGGG-CAGCGCTTCACCACTTCAGTCACGTGTTCGGCCTTTTT-GTACAC-GGG----CATGGCCCGGACGA---CGGCGCCCTGCGGCGG------G
i tetNig2.chr1                    C 0 C 0
s dipOrd1.scaffold_14566               2290 108 -     35663 -------------A---TCATTA----TCAGAA--CAG-GCTC-ATGATGTGGG-CAGCGCCTCACAACTTCTGTCATGGGCTGGGACTTCTT-GTAGAT-GGC----CATGGTGCGGACTC---GTGTGCCAGGTGGAGG------G
i dipOrd1.scaffold_14566          C 0 C 0
s tupBel1.scaffold_141935.1-6425       4503 107 +      6425 -----------------TCACTG----TCAG-G--CAGCGCTC-GTGTCGGCGC-AAG---CTCTCCACCGCTATCATAC-TTGAGACTGCTTCGAAGAA-GGC----CAATCGGCCGATACACGAGGTGCCCGCCGGGAG------C
i tupBel1.scaffold_141935.1-6425  I 1462 C 0
s choHof1.scaffold_240329              1872 111 -      2109 -----------------TCATTGAAT-TCACAG--CTCAGCTC-ATGGTTGGGG-CACCATTTCCCCACCTCAGTGACATGCTCAGCTTTCTT-GTAGAT-AGG----CATGGCACAGATCA---CAGCACCCTGAGGAGG------T
i choHof1.scaffold_240329         C 0 C 0
s echTel1.scaffold_129816               820 114 -      1574 -----------GCA---TCGATATAG-TCAGAG--CAACGCTC-CTGGTGGGGA-CAGCGCTTCACAACCTCCGTCATGTGCTCAGACTTCTT-GTAAAT-GGC----CATGGTGCGCACAC---GGGTGCCAGGCGGGGG------C
i echTel1.scaffold_129816         C 0 C 0
s otoGar1.scaffold_118233.1-50963      5339  86 +     50963 ------C---ACCC---CCA--------------------------GATGGGGG-CAGCACCTCGCGACC----TTATGCGTAGTGATGGCTA-GTGAGT-GACTGGGCGTGCCGTGG----------TGTCC-ATGGTGG------C
i otoGar1.scaffold_118233.1-50963 C 0 C 0
e monDom5.chr2                    286665505 12170 - 541556283 I
e speTri1.scaffold_150122              1470 33750 +     48993 M

a score=4696355.000000
s hg19.chr13                       32914423 162 + 115169878 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
s panTro2.chr13                    32107304 162 + 115868456 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGACA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
i panTro2.chr13                   C 0 C 0
s gorGor1.Supercontig_0026501          3880 162 +      8047 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
i gorGor1.Supercontig_0026501     C 0 C 0
s ponAbe2.chr13                    31875809 162 + 117095149 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGATATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAG----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGACAAGAAAATACT
i ponAbe2.chr13                   C 0 C 0
s rheMac2.chr17                    11711748 162 +  94452569 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
i rheMac2.chr17                   C 0 C 0
s papHam1.scaffold8860                29325 162 -     91400 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
i papHam1.scaffold8860            C 0 C 0
s calJac1.Contig1458                 176003 162 +    405365 TTTAGCACAGCAAGTGG-AAAATCTGTACAGGTATCAAATGCTTCATTGCAAAAGGCAAGACAAGTGTTTT--------------CTGA---GATAGATGATA---GTAC----------CAAGCAACTCTCTTCCGA----AGTATTGTTTACA----AATAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT
i calJac1.Contig1458              C 0 C 0
s tarSyr1.scaffold_132783               990 156 -      6023 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTTTCAGATGCTTCATTACAAAAGGCAAGACAGGTGTTTT--------------CTGA---GGTAGATGATA---ATAC----------CGAACAACTCTTTTCCAA----AGTATCATTTAAA----AGTA-----------AT---T-----------CAGATCAGTTTACAAAGGAAGAGACTACT
i tarSyr1.scaffold_132783         C 0 C 0
s micMur1.scaffold_6236               97203 158 +    100975 TTTAGTACAGCAAGTGG-AAAATCCATACAAGTATCAGATGCTTCATTACAAAAGGCAAGACAGGTGTTTT--------------CTGA---GATAGATGATA---GTGC----------CAAGCAACTCTTTTCCAA----AATATCCTTTAAA----AGTAATAAAGA---TAT---T-----------TAGACCAGTTCAC---AGAGAGAAA---A
i micMur1.scaffold_6236           C 0 C 0
s otoGar1.scaffold_101144.1-52040     43355 162 -     52040 TTTAGCACAGCAAGTGG-AAAATCCATACAGGTATCAGAGTCTTCATTACAACAGGCAAGACAGGTGTTTT--------------CTGA---GATAGAAGAGC---ATGC----------CAAGCAACACTTTTCAAA----AGTATCCTTTAAA----AATAATGAAGA--GTAT---T-----------CAGACCAGTTCACAAGAGAAGAAAA---A
i otoGar1.scaffold_101144.1-52040 C 0 C 0
s tupBel1.scaffold_131324.1-77451     10960 135 -     77451 TTTAGCACAGCAAGTGG-AAAATCCATACATGTATCAGATGTTTCATTACAAAAAGCAAGACAGGTGTTTT--------------CTGA---GATAGAAGATA---ATGC----------CAA-------------------------------A----AATAATGAA-----CAT---T-----------TAGATCAGTTCACAAGAGAAGAAAATACT
i tupBel1.scaffold_131324.1-77451 C 0 C 0
s rn4.chr12                        42474610 162 -  46782294 TTTAGCACAGCAAGTGG-AAAAGCTGTACAAGTATCTGATGCTTCATTGGAAAAGGCACGGCAAGTGTTTT--------------CTGA---GATAGATGGTG---ATGC----------TAAACAGTTAGCTTCCAT----GGTGTCACTGGAA----GGTAATGAA-----AAA---T-----------CACATCACTCTGTGAAAAGAGAAAGCTCT
i rn4.chr12                       C 0 C 0
s mm9.chr5                        151345137 162 + 152537259 TTTAGCACAGCAAGTGG-AAAAGCTATACAAGTATCAGATGCTTCATTAGAAAAGGCAAGGCAAGTGTTTT--------------CTGA---GATGGATGGTG---ATGC----------TAAACAGTTATCTTCCAT----GGTGTCACTGGAA----GGTAATGAA-----AAA---C-----------CACATCACTCTGTGAAAAGAGAAAACTCT
i mm9.chr5                        C 0 C 0
s cavPor3.scaffold_6               33813162 159 +  61187194 TTTAGCACGGCAAGTGG-AAAATCTGTACAAGTATCAAATGGTTCATTACAAAAGGCAAAACAGATGTTTT--------------CTAA---AACAGAAGATA---GTGC----------CAAGCAGCTGTTTTCCAA----AGT---ATTTAAA----AGCAGTGAA-----CAT---T-----------CAGACCAATTCACAAAAGAAGAAATTACT
i cavPor3.scaffold_6              C 0 C 0
s speTri1.scaffold_136871             52128 165 -    149453 TTTAGCACAGCTAGTGG-AAAATCTGTACAAGTATCAGATACTTCGTTACAAAAGGCAAGACAGATATTTT--------------CTGA---GATAGAAGATA---ATGC----------CAACCAACTCTTTTCCAA----AGTATCACTTAAA----AGCAACGAA-----GAACATT-----------CAAACCCGTTCACAAGAGAAAAAAGTACT
i speTri1.scaffold_136871         C 0 C 0
s oryCun2.chrUn0004                 3065495 162 +   7969563 TTTAGCACAGCAAGTGG-AAAATCTGTGCATGTGTCAGATGCTTCCTTACAAAAGGCGAAAGAGATGTTTT--------------CTGA---GACAGAAGATA---GTGC----------TGAACAACTCTTTTCCAA----AGTATCTTTTAAA----AGTAAAGAA-----TGT---T-----------CAGACCAATTCACCAGAGAAGAGAATTCT
i oryCun2.chrUn0004               C 0 C 0
s ochPri2.scaffold_63227               3283 162 +      7289 TTCAGCACAGCAAATGG-AAAGCCTGTACATGTGTCAGATGCTGCATTACAAAAGGCAAAGCAGATGTTTT--------------CTGA---AACTGAAGGTA---GTGC----------AGAACAACTCTTCAGCAA----AGTATCATTTAAA----GGTAAAGAA-----CGC---T-----------CAGACCAGTTCACAGGAGACGAAAGTGCT
i ochPri2.scaffold_63227          C 0 C 0
s vicPac1.scaffold_1303              214051 162 -    397986 TTTAGCACAGCAAGTGG-AAAATCTGTACACATATCAGATGCTGCATTCCAAAAGGCAAAACAGGTATTTT--------------CTAA---GATAGAAGATG---ATGC----------TAAGCAACTCCTTTCCAA----AGTATCATTTAAA----AGTAATGAAGA--ACAG---T-----------CGGATAAGTTCTCAGG---GGAAAATACT
i vicPac1.scaffold_1303           C 0 C 0
s turTru1.scaffold_99052              59316 165 -    340450 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCCTTACAAAAGGCAAGACAGGTATTTT--------------CTAA---GACAGAAGATA---GTGG----------TAAGCAACTCTTTCCCCA----AGTATCATTTAAA----AGTAATGAAGA--ACAT---T-----------CAAACAAGTTTGCAAGAGAAGAAAATACT
i turTru1.scaffold_99052          C 0 C 0
s bosTau4.chr12                    56910197 165 -  85358539 TTTAACACAGCAAGTGG-AAAATCTGTCCAAGTGTCAGATTCTGCATTACAAAAAGCGAGACAGGTATTTT--------------CTAA---GTCAGAAGACA---GTGC----------CAAGCAGTTCTTTTCCAG----AGTATCATTTAAA----AGTAATGAAGA--GCAT---T-----------CAGACATATTCACAAGAAAAGAAAATACT
i bosTau4.chr12                   C 0 C 0
s equCab2.chr17                    11530646 165 +  80757907 TTTAGCACAGCAAGTGG-AAAATCTGTGCAAGTATCAGATGCTGCATTACAAAAGGCAAGACAGGTATTTT--------------CTAA---GATAGAAGATG---GTGA----------CAATCAGCTCTTTTCCAA----AGTATCACTTAAA----AATAATAAAGA--ACAT---T-----------CAGACAAGTTCACAAGAGAAGAAAATACT
i equCab2.chr17                   C 0 C 0
s felCat3.scaffold_141508               959 165 +     43838 TTTAGCACAGCAAGTGG-AAAATGTGTACAAGTATCAGATGCTGCACTACAAAAGGCAAGACAGGTGTTTT--------------CTAA---GGTAGAAGACA---GTGC----------CAAGCAGCCCTTTTCCAA----AGTATCATTTAAA----CATAATGAGGA--TCAC---T-----------CAGACAAGTTCACAAGAGAAGAAAATACT
i felCat3.scaffold_141508         C 0 C 0
s canFam2.chr25                    43807475 165 -  54563659 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCAATACAAAAGGCAAGAGAGGTGTTTT--------------CTAA---GCTAGAAGATA---GTGC----------CAAGCAACTCTTTCCTGA----AGTATCACTTAAA----GATAATGAAGA--ACAT---T-----------CAGAAAAGTTCACAAATGAAGAAAATACT
i canFam2.chr25                   C 0 C 0
s myoLuc1.scaffold_166230              5395 165 -     15142 TTTAGCACAGCAAGTGG-AAAATGTGTACAAGTGTCAGATGCTGCCTTACAGAAGACCAGATGCATCTTTT--------------CTAA---GCTAGAAGAGA---GTGC----------CGAGCAGCTCTTTTCCAA----AGTATCATTTGAA----TCTAATGAAGA--ACAT---T-----------CAGACAGGCTCACAAGAGAAGAAAATACT
i myoLuc1.scaffold_166230         C 0 C 0
s pteVam1.scaffold_6136               29260 165 -     97493 TTTAGCACGGCGGGTGG-GAAGTTGGTACAGGTGTCGGGCGCTGCACTGCAAAAGGCCAGGCAGATATTTT--------------CTAG---GCTAGAAGATA---GTGC----------CGAGCAGCTCGGGGCCAG----AATAGCCTTTGAA----CATGATGAAGA--TCAT---T-----------CAGAGAATGCCACAAGAAAAGACGATACC
i pteVam1.scaffold_6136           C 0 C 0
s eriEur1.scaffold_292860              9251 165 +     12208 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCATTACAAAAGGCAAGAAAGGTATTTT--------------CTAAACTAGAAGAAGATA---GTGC----------TGACCAACTCCTCTCCAA----AGAGTC---ATTG----AAAAATAGTGA--ACAT---T-----------CAGACAACCTCACAAGAGATAAAAGTACT
i eriEur1.scaffold_292860         I 630 C 0
s sorAra1.scaffold_231034             27222 162 +     64674 TTTAGCACAGCAAGTGG-AAAAGCTGTACAAGTATCAGATGCTTCTTTGCAAAAGGCAAGACAAGTGTTTT--------------CAAA---GGTAGAAGATA---ATGC----------TGATCAGCCTTTTTctga----agtatt---taaa----aataatagaga--acAT---T-----------CGGACaagtacacaaaagaaaaaagtact
i sorAra1.scaffold_231034         C 0 C 0
s proCap1.scaffold_30001              16489 165 -     22135 TTTAGCACAGCTGGTGG-GAAATCCGTGCAGGTGTCAGATGCTGCCTTAAGAAAGACAAGACAGGTGTTTT--------------CTGA---GATGGAAGATA---GTGC----------CCAGCAGCTTGTGTACAC----AGAATCCTGTCAC----AGTAACAAGGG--ACAT---T-----------CAAACAAGGTCACAAAAGAAAGTAAGGCT
i proCap1.scaffold_30001          C 0 C 0
s loxAfr3.scaffold_11              62578974 162 -  67275361 TTTAGCACAGCAAGTGG-GAAATCTGTACAGGTGTCAGATGCTTCATTACAAAAGACAAGACAGGTGTTTT--------------CTGA---GATTGAAGAGA---GTAC----------CAAGTATCTCTTTTCCAA----ACTATCCTTTAAA----AGTAATGAAG-----AT---T-----------CAAACAAGTTCACCAAAGAAAAAAATACT
i loxAfr3.scaffold_11             C 0 C 0
s choHof1.scaffold_37163               7318 162 -     13057 TTTAGCACAGCAAGTGG-GAAATTTGTACAAGTATCAGATGCTTCATTACAAAAGGCAAGTCAGGTATTTT--------------CTGA---GATAGAAGATA---GTGC----------CAAGCAGTTCTTTTCCAA----AGTATCCTTTAAA----ATTAATGAAGA--ACAT---T-----------CAGACAAATTCAC---AGAAGAAAGTACC
i choHof1.scaffold_37163          C 0 C 0
s dasNov2.scaffold_18245              14882 162 -     37296 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGACACTTCATTACAAAAGGCAAGACAGATATTTT--------------CTGA---GACAGAAATTA---GTGC----------CAAGCAGTTCTTTTCCAA----AGTATCCTTTAGA----AGTAAT---GA--ACAT---T-----------CAGACCAATTTACAAAAGAAGAAAATAAT
i dasNov2.scaffold_18245          C 0 C 0
s macEug1.Scaffold381358                340 162 +      1363 TTTTGTACAGCCAATGG-CAAACCTGTGCAAGTATCAGGTAATTCATTAAAGAAAGCCAgacaggtttttt--------------ctga---aatagaaaata---attc----------tgaGCAATTACTTTCCAT----GACATCCTTTAAA----GATAGTGAAAG--CAAT---C-----------CAGAAAcatt---aatagaagaaaatgcc
i macEug1.Scaffold381358          C 0 C 0
s monDom5.chr4                    304148438 156 + 435153693 TTTTGTACAGCAAATGG-CAAACCTGTACAAGTATCAGATAATTCATTAAAGAAAGCCAGACAAGTATTTT--------------CTGA---AATAGCAAATG---ATTC----------TGAGCAATTACTTTCCA-------------TTAAA----GGTAGTGAAAA--CCAT---C-----------CAGAAACACTAATAGGAGAAGAAAATGCC
i monDom5.chr4                    C 0 C 0
s ornAna1.Ultra336                   845659 165 +  10157919 TTTAATACCGCAAGCGG-AAAACCCGTGCGGGTATCAGATGCTTCACTGAAGAAGGCAAAGCAAGTGTTTT--------------CTGC---AATAGAAAATC---ACTC----------TGAGCGACTGCCCTTTGT----AACATCTTTTAAA----GACACTGAAAG--TCAT---C-----------CAGAGAAGGTCATGGATGAAAGCAATCCT
i ornAna1.Ultra336                C 0 C 0
s galGal3.chr1                     22136643 179 - 200994015 TTCAGTACGGCAAGTGG-GAAGCCTGTGCAACTATCAGAAGAGTCGCTAAAGAAAGCTAGACAGCTCTTTT--------------CTGA---AATGGAAGGTAGCCATTCATCAGGGCTACAAGATGCACATTTGCTT----GAAGACGTTGAGA----AAT-CCACAAACCATGG---T-----------GAAGTATTTCCTAGAGAAATGCAGCTACT
i galGal3.chr1                    C 0 C 0
s taeGut1.chr1                     50821092 182 + 118548696 tttagtACAGCAAGTGG-AAAGCCTGTACAGCTTTCAGAAGAGTCACTCAGGAAAGCTAGACAGctctttt--------------ctga---aatggaagATAGTCATTCACCACATGTACAAGAAGCATTTTTAGTT-GAGGAAGATGTTGAAA----AGT-CTAAAATGCACAT---T-----------GAAGTACTACCTAGGGAAATGCAGGTAGT
i taeGut1.chr1                    C 0 C 0
s anoCar1.scaffold_312              1391078 185 -   1725611 TTCAGCACAGCGAGTGG-AAAAGCTGTTCAGTTATCTGAAGAGTCATTGAAAAAAGCAAgacagttttttt--------------ctga---aatcGAAGATG---ATTCATTAGGTTGTCAA---ACACATGTATCA----GGTGGTGGTGACC----ATTACTGGAAAGCGTCT---TCTGTCAGGAACAAAGCCACCGCTAAAGAAAATAAACTTCT
i anoCar1.scaffold_312            C 0 C 0
s xenTro2.scaffold_80               2044187 176 -   3128562 TTTAGTACTGCAAGTGG-CAAGACGGTGCAGTTGTCAGACGAGTCTTTGAAGAAAGCTAGGGTGATTTTTT--------------CTGA---AATAGATACTT---GTCCGTT-------GATGCAACAGCAGACTAATGAAAGCACTGTTGAAGAGATAGTAATAGGAGGAGGAA---T-------------GACAAAATCAAAACAGATGCCATTAAC
i xenTro2.scaffold_80             I 4 C 0
s tetNig2.chr16                     4699911 111 +   9031048 TTTCGTACAGCCAGTGGCAAGGCAGCAACCTGCTCGTCTGAA-GCCCTCCAGAAAGCTAAAGCGCTTTTTA--------------GTGA---CAT------CA---GTTC----------CAAT-------------G----AGAATACCGGACA----AGCAGACCA-----------T----------------------------------------
i tetNig2.chr16                   C 0 C 0
s danRer6.chr15                    32393696 147 +  47237297 TTTTCTACAGCAGGTGG-GAGGAAGATGGATATTTCTGTGACTGCACTGCAGAAGGCAAACAACCTCTTTAAAGATTGTGAAGAGGAGA---GTT------TA---GCTT----------CTAG-------------G----AGTCTTGCGCACC----AAGGCTTCA-----------C-----------TA-------CTGCCAGTGGTAAAAATGTT
i danRer6.chr15                   C 0 I 102
e dipOrd1.scaffold_47936               6489 3359 -     10608 I
e echTel1.scaffold_282619             20187 28333 +     54172 I
e oryLat2.chr14                     9930930   2 +  33607196 I
e gasAcu1.chrVII                   19975244   0 +  27937443 I

a score=-751512.000000
s hg19.chr13                       32914585 52 + 115169878 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G
s panTro2.chr13                    32107466 52 + 115868456 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G
i panTro2.chr13                   C 0 C 0
s gorGor1.Supercontig_0026501          4042 52 +      8047 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G
i gorGor1.Supercontig_0026501     C 0 C 0
s ponAbe2.chr13                    31875971 52 + 117095149 -GCTAT-------------ACAT-----------ACTCCAGAAAATTTAAC-----AT--CCCAAAAAGGCTTTTCATATAAT-G
i ponAbe2.chr13                   C 0 C 0
s rheMac2.chr17                    11711910 55 +  94452569 -ACTAT-------------ACAT-----------ACTCCAAAACATTTAATA--TCAT--CCCAAAAAGACTTTTCACATAAT-G
i rheMac2.chr17                   C 0 C 0
s papHam1.scaffold8860                29487 55 -     91400 -ACTAT-------------ACAT-----------ACTCCAAAACATTTAATA--TCAT--CCCAAAAAGACTTTTCATATAAT-G
i papHam1.scaffold8860            C 0 C 0
s calJac1.Contig1458                 176165 54 +    405365 -GCTAC-------------ACAG-----------ATAGCAGAACATTTGATA--CCAT--CCCAAAAAGGCTTTTCATATAAT--
i calJac1.Contig1458              C 0 C 0
s tarSyr1.scaffold_132783              1146 55 -      6023 -ATGAT-------------GCAT-----------ACCCCAAAACATTTAATA--GCAC--CCCAAAAAGGCTTTTCACATAAT-G
i tarSyr1.scaffold_132783         C 0 C 0
s micMur1.scaffold_6236               97361 52 +    100975 -ACAAT-------------GCAT-----------ATCC--CCAAATTTAAT-----ATCACCCCAAAAGGCTTTTCGTATAAT-G
i micMur1.scaffold_6236           C 0 M 467
s otoGar1.scaffold_101144.1-52040     43517 52 -     52040 -GTAAT-------------TCAT-----------GTCCCACAAAAGTTAAT-----AT--CCCAAAAAGGCTTTTCATGCAAT-G
i otoGar1.scaffold_101144.1-52040 C 0 C 0
s tupBel1.scaffold_131324.1-77451     11095 55 -     77451 -ATGAC-------------ACAT-----------ACTCCCCAGAATGTATTA--TCAC--CCAAAAAAGGCTTTTCATATAAT-A
i tupBel1.scaffold_131324.1-77451 C 0 C 0
s rn4.chr12                        42474772 55 -  46782294 -GTGGT-------------GCAT-----------AACACCCATGGTGTATTG--TCAC--TCCGAAAAACCCTCCCAGGCAAT-G
i rn4.chr12                       C 0 C 0
s mm9.chr5                        151345299 55 + 152537259 -GTGGT-------------GCAT-----------AGCACCCAGGGTGTATTG--TCAC--TCCCAAAACCCCTCCCAGGCAAT-G
i mm9.chr5                        C 0 C 0
s cavPor3.scaffold_6               33813321 55 +  61187194 -GTAAT-------------GCGC-----------ACCCCCTCAAAAGTACCA--TCAC--CTCCGAAAAACTTTCACCATAGT-G
i cavPor3.scaffold_6              C 0 C 0
s speTri1.scaffold_136871             52293 55 -    149453 -ATGGC-------------ACAT-----------GCCCCCCCAAACGTACTA--TCAC--CCGGGAAAAGCTTTCTGTGTAAC-A
i speTri1.scaffold_136871         C 0 C 0
s oryCun2.chrUn0004                 3065657 55 +   7969563 -ATGAC-------------AGAT-----------ATCCCAAAAAATTTACTG--TCAT--CTCAGAAAGACTTTTCAAATAAT-G
i oryCun2.chrUn0004               C 0 C 0
s ochPri2.scaffold_63227               3445 52 +      7289 -GTGAC-------------AGAT-----------GGCCCAGAAAACACACTG-----T--TCCAGAAGGACGTTCCATATAAT-G
i ochPri2.scaffold_63227          C 0 C 0
s vicPac1.scaffold_1303              214213 27 -    397986 -AAGAT-------------ACAT-----------ACCCCTCAAAATTTACTG---------------------------------
i vicPac1.scaffold_1303           C 0 C 0
s turTru1.scaffold_99052              59481 27 -    340450 -GTGAT-------------ACAT-----------ACCCCCCAAAATTTACTA---------------------------------
i turTru1.scaffold_99052          C 0 C 0
s bosTau4.chr12                    56910362 28 -  85358539 -ATGAC-------------ACAT----------AACCCCCCCAAATTTACTA---------------------------------
i bosTau4.chr12                   C 0 C 0
s equCab2.chr17                    11530811 27 +  80757907 -ATGAT-------------ACAT-----------AGCCCCCAAAATTTGCTG---------------------------------
i equCab2.chr17                   C 0 C 0
s felCat3.scaffold_141508              1124 29 +     43838 -ATGAT-------------ACAT-----------ACCCCCCAAAATTTACTATC-------------------------------
i felCat3.scaffold_141508         C 0 I 913
s canFam2.chr25                    43807640 29 -  54563659 -GTGAT-------------ATAT-----------ACCTCCCAAAATTTACTATC-------------------------------
i canFam2.chr25                   C 0 C 0
s myoLuc1.scaffold_166230              5560 27 -     15142 -ATGAT-------------ACAT-----------ATCCCCCCAAATTTG-------------------------CCA--------
i myoLuc1.scaffold_166230         C 0 C 0
s pteVam1.scaffold_6136               29425 27 -     97493 -GTGAT-------------ACGC-----------ACCCCCCAGAATGTC-------------------------CCG--------
i pteVam1.scaffold_6136           C 0 C 0
s eriEur1.scaffold_292860              9416 27 +     12208 -GTGGT-------------ACAT-----------ACTACCCCAAATTC----------------AAAA-----------------
i eriEur1.scaffold_292860         C 0 C 0
s sorAra1.scaffold_231034             27384 24 +     64674 -gtAAT-------------ACAT-----------AGCGCTTCAAAATC-------------------A-----------------
i sorAra1.scaffold_231034         C 0 C 0
s proCap1.scaffold_30001              16654 55 -     22135 -GTGAT-------------ACAC-----------ACCAAAGACAAATTGCCA--TCAC--CCCTAGCAGGCTTTTCATCTAGA-G
i proCap1.scaffold_30001          C 0 C 0
s loxAfr3.scaffold_11              62579136 53 -  67275361 -GTGAT-------------ACAT-----------ACCAAAAACAAATTGCTA--CCAC--CCCAGGAAGGCTTTTCGTCTAG---
i loxAfr3.scaffold_11             C 0 C 0
s choHof1.scaffold_37163               7480 55 -     13057 -ATGAC-------------ACAC-----------ACCAACAACAATTTACCA--TTAC--CCCAAAAAGATTTTTTATATAA-TG
i choHof1.scaffold_37163          C 0 C 0
s dasNov2.scaffold_18245              15044 52 -     37296 -ATGAC-------------AC--------------TTAGCAACAGTTTACCA--TCAT--CTCAAAAAGGCTTTTCATGTAA-TG
i dasNov2.scaffold_18245          C 0 C 0
s macEug1.Scaffold381358                502 52 +      1363 -TTGTT-------------ACAT-----------GC-----AAAAACTAACCTATCAG--AAAAGAAAGACTATTTAAATAAT-A
i macEug1.Scaffold381358          C 0 C 0
s monDom5.chr4                    304148594 52 + 435153693 -ATGCT-------------TTAT-----------GC-----AAAAATCAACCTACCAG--CACAAAAAGACTATTTGAGTAAT-A
i monDom5.chr4                    C 0 C 0
s ornAna1.Ultra336                   845824 36 +  10157919 -AACAG-------------AAGTGAAAAACCCCAAGTGCTACAAAAGCAC-----------------------------------
i ornAna1.Ultra336                C 0 C 0
s galGal3.chr1                     22136822 32 - 200994015 -GCTGCCAAGAGGGAAGGAGAAT-----------GCCAGCACGG-----------------------------------------
i galGal3.chr1                    C 0 C 0
s taeGut1.chr1                     50821274 32 + 118548696 -ATCAtcaaaaggggaagaaaat-----------accAGCCCTG-----------------------------------------
i taeGut1.chr1                    C 0 C 0
s anoCar1.scaffold_312              1391263 32 -   1725611 -CATGTCCCAAGGGAAAATACTT-----------TCAAATGCAG-----------------------------------------
i anoCar1.scaffold_312            C 0 C 0
s xenTro2.scaffold_80               2044363 22 -   3128562 -AACAG-------------AAAA-----------AGTCGAAACAACT--------------------------------------
i xenTro2.scaffold_80             C 0 C 0
s tetNig2.chr16                     4700022 22 +   9031048 GCTGAT-------------CCGG-----------AACAAGAGAAGA---------------------------------------
i tetNig2.chr16                   C 0 C 0
e dipOrd1.scaffold_47936               6489 3359 -     10608 I
e echTel1.scaffold_282619             20187 28333 +     54172 I
e oryLat2.chr14                     9930930  2 +  33607196 I
e gasAcu1.chrVII                   19975244  0 +  27937443 I
e danRer6.chr15                    32393843 102 +  47237297 I