Mercurial > repos > iuc > ucsc_mafcoverage
view test-data/mafFetch.maf @ 0:2b1884fdb849 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit fe43201294560762b7aab73785df2f1f7828cb9e
| author | iuc |
|---|---|
| date | Thu, 14 Aug 2025 11:59:27 +0000 |
| parents | |
| children |
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##maf version=1 ##maf version=1 scoring=autoMZ.v1 a score=3796057.000000 s hg19.chr17 7578364 116 + 81195210 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T s xenTro2.scaffold_440 77711 119 + 1031938 ---GATT---ACCA---TCCCCTGGC-TCCACG--CTGCGCTC-ATGGTGGGGG-CACCTCTTGACCACCTCGGCCACGTGCTCGGATTTCTT-GTACAC-GGC----CGTAGCCCGGAGAA---TGGAGCCGAGCGGCGG------G i xenTro2.scaffold_440 I 804 C 0 s ornAna1.Contig14337 7793 116 + 24454 CC---TC---ACCG---TCACCG----TCGGAA--GAGCGCTC-GTGGTGGGGG-CACCTCTTCACCACCTCGGCCCTGTGGTCGGTCTTCTT-GTAGAC-GGC----CATggcccggaccc---gggcccccggcggggg------c i ornAna1.Contig14337 C 0 C 0 s macEug1.Scaffold144598 15841 104 - 16042 GC---TC---A-------------------GTG--CATCGTTC-ATGGTGGGGA-CAGCGCTTAACCACCTCAGTCATGTGTTCTGACTTCTT-ATAAAT-AGC----CATAGCGCGAACTC---GGGCACCAGCAGGTGG------T i macEug1.Scaffold144598 C 0 C 0 s dasNov2.scaffold_2289 70843 119 + 182311 CC---TC---ACCA---TCCCCATGT-TCTGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTCGGACTTCTT-GTAGAC-AGC----CATGGCCCGGACGC---GGGCCCCAGGAGGGGG------T i dasNov2.scaffold_2289 C 0 C 0 s proCap1.scaffold_6241 18925 119 + 60317 CC---TC---ACCA---TCGTTATAG-TCAGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCTTCACAACCTCTGTCATGTGCTCTGACTTCTT-GTAGAT-GGC----CATGGTGCGAACAC---AGGTGCCTGGCGGGGG------T i proCap1.scaffold_6241 C 0 C 0 s loxAfr3.scaffold_47 11692611 119 + 18382006 CC---TC---ACCA---TCGCTAGAG-TCAGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCTTGACGACCTCCGTCATATGCTCTGACTTCTT-GTAGAT-GGC----CATGGTGCGAACAC---GGGTGCCGGGCGGGGG------T i loxAfr3.scaffold_47 C 0 C 0 s sorAra1.scaffold_223295 4340 119 - 5675 AC---GC---ACCG---TCATTATAG-TCAGAG--CAGCGCTC-GTGGTGCGGG-CAGCGCCGCACCACTTCTGTCATATACTCGGATTTCTT-GTAGAT-GGC----CATGGCACGGACTC---GTGCGCCCTGTGGGGG------T i sorAra1.scaffold_223295 C 0 C 0 s eriEur1.scaffold_369359 787 116 + 53529 TC---TC---ACCA---TCATTGCAG-TCCG-----AGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCTGTCATATGCTCTGACTTCTT-GTAGAT-GGC----CATGGCGCGAACAT---GGCTACCCATTGGTGG------T i eriEur1.scaffold_369359 C 0 C 0 s pteVam1.scaffold_3215 83447 124 + 151245 -CACTTC---ACCA---TCGCTATAATTCTGGA--CAGCGTTC-ATGGTGGGGGCCAGCGCCTCACCACCTCTGTCATGTCCTCAGATTTCTT-GAATATGGGC----CATGTCTCGGACAC---GGGTGCCAAGTGGGGG------T i pteVam1.scaffold_3215 C 0 M 669 s felCat3.scaffold_213592 202966 119 + 335748 GC---TC---ACCA---TCGCTACTG-TCAGGG--CAGCGCTC-GTGGTGGGGA-CAGCGCCTCACGACCTCTGTCATGAACTCTGACTTCTT-ATAAAT-GGC----CATGGCGCGGACAC---AGGTTCCCGGTGGGGG------C i felCat3.scaffold_213592 C 0 C 0 s canFam2.chr5 35559471 119 + 91976430 GC---TT---ACCG---TCACTACTG-TCAGAG--CAGCGTTC-ATGGTGGGGG-CAGCGCCGCACAACCTCGGTCACGAACTCCGACTTCTT-ATAGAT-GGC----CATAGCGCGGACGC---AGGTATTGGGTGGGGG------T i canFam2.chr5 C 0 C 0 s equCab2.chr11 50614770 119 + 61308211 AC---TC---ACCA---TCGCTACTG-TCAGAG--CAGCGTTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGAACTCTGACTTCTT-GTAGAT-GGC----CATGGCCCGGACAC---GGGTGCCGGGTGGGGG------T i equCab2.chr11 C 0 C 0 s myoLuc1.scaffold_182347 10113 118 + 17583 -C---TC---ACCG---TCACTATAG-TCAGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCGCACGACCTCCGTCATGTGCTCGGACTTCTT-GTAGAT-GGC----CATGGCACGGACCC---GGGAGCTGAGCGGGGG------T i myoLuc1.scaffold_182347 C 0 C 0 s bosTau4.chr19 27882876 119 + 65312493 GC---TC---ACCA---TCGCTATAG-TCAGAG--GAGCGCTC-ATGGTGGGGA-CAACGCCTCACAACCTCCGTCATGTGCTCCAACTTCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T i bosTau4.chr19 C 0 C 0 s turTru1.scaffold_109828 111640 119 + 563998 GC---TC---ACCG---TCGCTATAG-TCAGAG--CAGCGCTC-ATGGTGGGGA-CAGCGCCTCACAACCTCCGTCATGTACTCTGACTTCTT-ATAGAT-GGC----CATGGCGCGGACCC---GGGTGCCGGGCGGGGG------T i turTru1.scaffold_109828 C 0 C 0 s ochPri2.scaffold_2885 39191 116 + 176626 AC---TC---ACCA---TCGCTA----TCCGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCTTCACAATCTCGGTCACATGCTGCGACTTCTT-GTAGAT-GGC----CATGGCCCGCACGC---GGGTGCCAGGCGGGGG------T i ochPri2.scaffold_2885 C 0 C 0 s oryCun2.chr19 45751305 116 - 57279966 AC---TC---ACCA---TCGCTG----TCGGAG--CAGCGCTC-GTGGTGGGGG-CAGCGTCTGACAACTTCCGTCATGTGCTGAGACTTCTT-GTAGAT-GGC----CATGGCCCGGACGC---GGCTGCCAGGCGGGGG------C i oryCun2.chr19 C 0 C 0 s cavPor3.scaffold_61 1734708 116 - 10725151 AC---TC---ACCA---TCACTA----TCGGAA--CAGCGCTC-GTGATGGGGG-CAGCGTCTCACCACCTCCGTCATGTGCTGTGACTTCTT-GTAGAT-GGC----CAGGGCACGGACTC---GGGTGCCAGGTGGGGG------T i cavPor3.scaffold_61 C 0 C 0 s rn4.chr10 54310678 116 - 110718848 GC---TC---ACCG---TCACCA----TCAGAG--CAACGCTC-ATGGTGGGGG-CAGCGTCTCACGACCTCAGTCATGTGTTGTGACTTCTT-GTAGAT-GGC----CATGGCACGGACAC---GGGTACCAGGTGGAGG------T i rn4.chr10 C 0 C 0 s mm9.chr11 52441801 116 - 121843856 GC---TT---ACCA---TCACCA----TCGGAG--CAGCGCTC-ATGGTGGGGG-CAGCGTCTCACGACCTCCGTCATGTGCTGTGACTTCTT-GTAGAT-GGC----CATGGCGCGGACAC---GGCTCCCAGCTGGAGG------T i mm9.chr11 C 0 C 0 s panTro2.chr17 7856405 116 + 83384210 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGTGGGGG------T i panTro2.chr17 C 0 C 0 s gorGor1.Supercontig_0189236 487 116 + 3737 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTT-ATAGAT-GGC----CATGGCGCGGACGC---GGGTGCCGGGCGGGGG------T i gorGor1.Supercontig_0189236 C 0 C 0 s ponAbe2.chr17 7682674 116 + 73212453 GC---TC---ACCA---TCACTA----TCTGAG--CAGCGCTC-ATGGTGGGGA-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGTGGGGG------T i ponAbe2.chr17 C 0 C 0 s rheMac2.chr16 7405993 116 + 78773432 GC---TC---ACCA---TCGCTG----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGCTGCCGGGTGGGGG------T i rheMac2.chr16 C 0 C 0 s papHam1.scaffold7284 33446 116 + 103654 GC---TC---ACCA---TCGCTG----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGCTGCCGGGCGGGGG------T i papHam1.scaffold7284 C 0 C 0 s calJac1.Contig2760 258379 116 + 385592 GC---TC---ACCA---TCGCTA----TCTGAG--CAGCGCTC-ATGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGCTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCACGTGGGGG------T i calJac1.Contig2760 C 0 C 0 s tarSyr1.scaffold_121145 321 116 + 7117 AC---TC---ACCA---TCGCTA----TCTGAG--CAACGCTC-ATGGTGGGGG-CAGCGCCTTACCACCTCTGTCATGTATTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGACGC---GGGTGCCAGGCGGGGG------T i tarSyr1.scaffold_121145 C 0 C 0 s micMur1.scaffold_3128 110288 116 + 169956 AC---TC---ACCA---TCGCTA----TCGGAG--CAGCGCTC-GTGGTGGGGG-CAGCGCCTCACGACCTCCGTCATGTGTTGTGACTGCTT-GTAGAT-GGC----CATGGCGCGGATGC---GGCTGCCTGGCGGGGG------C i micMur1.scaffold_3128 C 0 C 0 s petMar1.Contig11049 1942 117 + 16916 -----TT---ACCA---TCGTTGAAC-TCCTTG--GAGATCTC-GTGGTTGGGG-CACCGCTTTACGACCTCGGTCAGGTGGTCGGCCTTCTT-GTACAC-GGG----CATGGCACGCACTA---CGCAACCGGTCGGCAC------C i petMar1.Contig11049 I 752 C 0 s danRer6.chr6 30982895 119 - 61647013 ------GCATACCG---TCATTGAAC-TCTCTG--CTCAGCTC-GTGGTTCGGG-CATCGTTTGACCACCTCAGTAACATGCTCTGCTTTCTT-ATAGAC-AGG----CATGGCCCGTATGA---CTGCACCCTGGGGTGG------G i danRer6.chr6 C 0 C 0 s oryLat2.chr18 15469404 116 - 29908082 ------G---TCTGTTTTCCTTACAG-TCCTCG--TT---TTG-GTGGTGGGGA-CACCTCCTCACCACGTCCGCCACGTGCTCCGTCTTCTT-GTAGAC-CGC----AGTGGCCCTGAGAA---TGGCGCCCTTTGGAGG------C i oryLat2.chr18 C 0 C 0 s gasAcu1.chrVIII 1698226 116 - 19368704 ------G---ACCG---TCGTTGAAC-TCGCGG--CTGAGCTC-GTGGTTCGGG-CAGCGCTTCACCACCTCCGTCACGTGCTCCGCCTTCTT-GTAGAC-GGG----CATGGCCCGGATGA---CGGCGCCCTGCGGCGG------G i gasAcu1.chrVIII C 0 C 0 s fr2.chrUn 269239176 124 - 400509343 ----------GCTG---CCGTTTCTC-TTACAGTCCTCGTTTTGGTGGTGGGGG-CACCGGCGGACCACATCTGCCACGTGTTCGATCTTCTT-GTAAAT-GGC----TGTAGCCCTCAGGA---CGGCGCCCGCAGGAGGCTTCTTG i fr2.chrUn C 0 C 0 s tetNig2.chr1 12256769 114 - 22981688 -----------CCG---TCGTTGAAC-TCGCGG--CTCAGCTC-GTGGTTCGGG-CAGCGCTTCACCACTTCAGTCACGTGTTCGGCCTTTTT-GTACAC-GGG----CATGGCCCGGACGA---CGGCGCCCTGCGGCGG------G i tetNig2.chr1 C 0 C 0 s dipOrd1.scaffold_14566 2290 108 - 35663 -------------A---TCATTA----TCAGAA--CAG-GCTC-ATGATGTGGG-CAGCGCCTCACAACTTCTGTCATGGGCTGGGACTTCTT-GTAGAT-GGC----CATGGTGCGGACTC---GTGTGCCAGGTGGAGG------G i dipOrd1.scaffold_14566 C 0 C 0 s tupBel1.scaffold_141935.1-6425 4503 107 + 6425 -----------------TCACTG----TCAG-G--CAGCGCTC-GTGTCGGCGC-AAG---CTCTCCACCGCTATCATAC-TTGAGACTGCTTCGAAGAA-GGC----CAATCGGCCGATACACGAGGTGCCCGCCGGGAG------C i tupBel1.scaffold_141935.1-6425 I 1462 C 0 s choHof1.scaffold_240329 1872 111 - 2109 -----------------TCATTGAAT-TCACAG--CTCAGCTC-ATGGTTGGGG-CACCATTTCCCCACCTCAGTGACATGCTCAGCTTTCTT-GTAGAT-AGG----CATGGCACAGATCA---CAGCACCCTGAGGAGG------T i choHof1.scaffold_240329 C 0 C 0 s echTel1.scaffold_129816 820 114 - 1574 -----------GCA---TCGATATAG-TCAGAG--CAACGCTC-CTGGTGGGGA-CAGCGCTTCACAACCTCCGTCATGTGCTCAGACTTCTT-GTAAAT-GGC----CATGGTGCGCACAC---GGGTGCCAGGCGGGGG------C i echTel1.scaffold_129816 C 0 C 0 s otoGar1.scaffold_118233.1-50963 5339 86 + 50963 ------C---ACCC---CCA--------------------------GATGGGGG-CAGCACCTCGCGACC----TTATGCGTAGTGATGGCTA-GTGAGT-GACTGGGCGTGCCGTGG----------TGTCC-ATGGTGG------C i otoGar1.scaffold_118233.1-50963 C 0 C 0 e monDom5.chr2 286665505 12170 - 541556283 I e speTri1.scaffold_150122 1470 33750 + 48993 M a score=4696355.000000 s hg19.chr13 32914423 162 + 115169878 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT s panTro2.chr13 32107304 162 + 115868456 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGACA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT i panTro2.chr13 C 0 C 0 s gorGor1.Supercontig_0026501 3880 162 + 8047 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT i gorGor1.Supercontig_0026501 C 0 C 0 s ponAbe2.chr13 31875809 162 + 117095149 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGATATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAG----AGTAACGAA-----CAT---T-----------CAGACCAGCTCACAAGACAAGAAAATACT i ponAbe2.chr13 C 0 C 0 s rheMac2.chr17 11711748 162 + 94452569 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT i rheMac2.chr17 C 0 C 0 s papHam1.scaffold8860 29325 162 - 91400 TTTAGCACAGCAAGTGG-AAAATCTGTCCAGGTATCAGATGCTTCATTACAAAAGGCAAGACAAGTGTTTT--------------CTGA---AATAGAAGATA---GTAC----------CAAGCAAGTCTTTTCCAA----AGTATTGTTTAAA----AGTAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT i papHam1.scaffold8860 C 0 C 0 s calJac1.Contig1458 176003 162 + 405365 TTTAGCACAGCAAGTGG-AAAATCTGTACAGGTATCAAATGCTTCATTGCAAAAGGCAAGACAAGTGTTTT--------------CTGA---GATAGATGATA---GTAC----------CAAGCAACTCTCTTCCGA----AGTATTGTTTACA----AATAATGAA-----CAT---T-----------CAGACCAGCTCACAAGAGAAGAAAATACT i calJac1.Contig1458 C 0 C 0 s tarSyr1.scaffold_132783 990 156 - 6023 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTTTCAGATGCTTCATTACAAAAGGCAAGACAGGTGTTTT--------------CTGA---GGTAGATGATA---ATAC----------CGAACAACTCTTTTCCAA----AGTATCATTTAAA----AGTA-----------AT---T-----------CAGATCAGTTTACAAAGGAAGAGACTACT i tarSyr1.scaffold_132783 C 0 C 0 s micMur1.scaffold_6236 97203 158 + 100975 TTTAGTACAGCAAGTGG-AAAATCCATACAAGTATCAGATGCTTCATTACAAAAGGCAAGACAGGTGTTTT--------------CTGA---GATAGATGATA---GTGC----------CAAGCAACTCTTTTCCAA----AATATCCTTTAAA----AGTAATAAAGA---TAT---T-----------TAGACCAGTTCAC---AGAGAGAAA---A i micMur1.scaffold_6236 C 0 C 0 s otoGar1.scaffold_101144.1-52040 43355 162 - 52040 TTTAGCACAGCAAGTGG-AAAATCCATACAGGTATCAGAGTCTTCATTACAACAGGCAAGACAGGTGTTTT--------------CTGA---GATAGAAGAGC---ATGC----------CAAGCAACACTTTTCAAA----AGTATCCTTTAAA----AATAATGAAGA--GTAT---T-----------CAGACCAGTTCACAAGAGAAGAAAA---A i otoGar1.scaffold_101144.1-52040 C 0 C 0 s tupBel1.scaffold_131324.1-77451 10960 135 - 77451 TTTAGCACAGCAAGTGG-AAAATCCATACATGTATCAGATGTTTCATTACAAAAAGCAAGACAGGTGTTTT--------------CTGA---GATAGAAGATA---ATGC----------CAA-------------------------------A----AATAATGAA-----CAT---T-----------TAGATCAGTTCACAAGAGAAGAAAATACT i tupBel1.scaffold_131324.1-77451 C 0 C 0 s rn4.chr12 42474610 162 - 46782294 TTTAGCACAGCAAGTGG-AAAAGCTGTACAAGTATCTGATGCTTCATTGGAAAAGGCACGGCAAGTGTTTT--------------CTGA---GATAGATGGTG---ATGC----------TAAACAGTTAGCTTCCAT----GGTGTCACTGGAA----GGTAATGAA-----AAA---T-----------CACATCACTCTGTGAAAAGAGAAAGCTCT i rn4.chr12 C 0 C 0 s mm9.chr5 151345137 162 + 152537259 TTTAGCACAGCAAGTGG-AAAAGCTATACAAGTATCAGATGCTTCATTAGAAAAGGCAAGGCAAGTGTTTT--------------CTGA---GATGGATGGTG---ATGC----------TAAACAGTTATCTTCCAT----GGTGTCACTGGAA----GGTAATGAA-----AAA---C-----------CACATCACTCTGTGAAAAGAGAAAACTCT i mm9.chr5 C 0 C 0 s cavPor3.scaffold_6 33813162 159 + 61187194 TTTAGCACGGCAAGTGG-AAAATCTGTACAAGTATCAAATGGTTCATTACAAAAGGCAAAACAGATGTTTT--------------CTAA---AACAGAAGATA---GTGC----------CAAGCAGCTGTTTTCCAA----AGT---ATTTAAA----AGCAGTGAA-----CAT---T-----------CAGACCAATTCACAAAAGAAGAAATTACT i cavPor3.scaffold_6 C 0 C 0 s speTri1.scaffold_136871 52128 165 - 149453 TTTAGCACAGCTAGTGG-AAAATCTGTACAAGTATCAGATACTTCGTTACAAAAGGCAAGACAGATATTTT--------------CTGA---GATAGAAGATA---ATGC----------CAACCAACTCTTTTCCAA----AGTATCACTTAAA----AGCAACGAA-----GAACATT-----------CAAACCCGTTCACAAGAGAAAAAAGTACT i speTri1.scaffold_136871 C 0 C 0 s oryCun2.chrUn0004 3065495 162 + 7969563 TTTAGCACAGCAAGTGG-AAAATCTGTGCATGTGTCAGATGCTTCCTTACAAAAGGCGAAAGAGATGTTTT--------------CTGA---GACAGAAGATA---GTGC----------TGAACAACTCTTTTCCAA----AGTATCTTTTAAA----AGTAAAGAA-----TGT---T-----------CAGACCAATTCACCAGAGAAGAGAATTCT i oryCun2.chrUn0004 C 0 C 0 s ochPri2.scaffold_63227 3283 162 + 7289 TTCAGCACAGCAAATGG-AAAGCCTGTACATGTGTCAGATGCTGCATTACAAAAGGCAAAGCAGATGTTTT--------------CTGA---AACTGAAGGTA---GTGC----------AGAACAACTCTTCAGCAA----AGTATCATTTAAA----GGTAAAGAA-----CGC---T-----------CAGACCAGTTCACAGGAGACGAAAGTGCT i ochPri2.scaffold_63227 C 0 C 0 s vicPac1.scaffold_1303 214051 162 - 397986 TTTAGCACAGCAAGTGG-AAAATCTGTACACATATCAGATGCTGCATTCCAAAAGGCAAAACAGGTATTTT--------------CTAA---GATAGAAGATG---ATGC----------TAAGCAACTCCTTTCCAA----AGTATCATTTAAA----AGTAATGAAGA--ACAG---T-----------CGGATAAGTTCTCAGG---GGAAAATACT i vicPac1.scaffold_1303 C 0 C 0 s turTru1.scaffold_99052 59316 165 - 340450 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCCTTACAAAAGGCAAGACAGGTATTTT--------------CTAA---GACAGAAGATA---GTGG----------TAAGCAACTCTTTCCCCA----AGTATCATTTAAA----AGTAATGAAGA--ACAT---T-----------CAAACAAGTTTGCAAGAGAAGAAAATACT i turTru1.scaffold_99052 C 0 C 0 s bosTau4.chr12 56910197 165 - 85358539 TTTAACACAGCAAGTGG-AAAATCTGTCCAAGTGTCAGATTCTGCATTACAAAAAGCGAGACAGGTATTTT--------------CTAA---GTCAGAAGACA---GTGC----------CAAGCAGTTCTTTTCCAG----AGTATCATTTAAA----AGTAATGAAGA--GCAT---T-----------CAGACATATTCACAAGAAAAGAAAATACT i bosTau4.chr12 C 0 C 0 s equCab2.chr17 11530646 165 + 80757907 TTTAGCACAGCAAGTGG-AAAATCTGTGCAAGTATCAGATGCTGCATTACAAAAGGCAAGACAGGTATTTT--------------CTAA---GATAGAAGATG---GTGA----------CAATCAGCTCTTTTCCAA----AGTATCACTTAAA----AATAATAAAGA--ACAT---T-----------CAGACAAGTTCACAAGAGAAGAAAATACT i equCab2.chr17 C 0 C 0 s felCat3.scaffold_141508 959 165 + 43838 TTTAGCACAGCAAGTGG-AAAATGTGTACAAGTATCAGATGCTGCACTACAAAAGGCAAGACAGGTGTTTT--------------CTAA---GGTAGAAGACA---GTGC----------CAAGCAGCCCTTTTCCAA----AGTATCATTTAAA----CATAATGAGGA--TCAC---T-----------CAGACAAGTTCACAAGAGAAGAAAATACT i felCat3.scaffold_141508 C 0 C 0 s canFam2.chr25 43807475 165 - 54563659 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCAATACAAAAGGCAAGAGAGGTGTTTT--------------CTAA---GCTAGAAGATA---GTGC----------CAAGCAACTCTTTCCTGA----AGTATCACTTAAA----GATAATGAAGA--ACAT---T-----------CAGAAAAGTTCACAAATGAAGAAAATACT i canFam2.chr25 C 0 C 0 s myoLuc1.scaffold_166230 5395 165 - 15142 TTTAGCACAGCAAGTGG-AAAATGTGTACAAGTGTCAGATGCTGCCTTACAGAAGACCAGATGCATCTTTT--------------CTAA---GCTAGAAGAGA---GTGC----------CGAGCAGCTCTTTTCCAA----AGTATCATTTGAA----TCTAATGAAGA--ACAT---T-----------CAGACAGGCTCACAAGAGAAGAAAATACT i myoLuc1.scaffold_166230 C 0 C 0 s pteVam1.scaffold_6136 29260 165 - 97493 TTTAGCACGGCGGGTGG-GAAGTTGGTACAGGTGTCGGGCGCTGCACTGCAAAAGGCCAGGCAGATATTTT--------------CTAG---GCTAGAAGATA---GTGC----------CGAGCAGCTCGGGGCCAG----AATAGCCTTTGAA----CATGATGAAGA--TCAT---T-----------CAGAGAATGCCACAAGAAAAGACGATACC i pteVam1.scaffold_6136 C 0 C 0 s eriEur1.scaffold_292860 9251 165 + 12208 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGATGCTGCATTACAAAAGGCAAGAAAGGTATTTT--------------CTAAACTAGAAGAAGATA---GTGC----------TGACCAACTCCTCTCCAA----AGAGTC---ATTG----AAAAATAGTGA--ACAT---T-----------CAGACAACCTCACAAGAGATAAAAGTACT i eriEur1.scaffold_292860 I 630 C 0 s sorAra1.scaffold_231034 27222 162 + 64674 TTTAGCACAGCAAGTGG-AAAAGCTGTACAAGTATCAGATGCTTCTTTGCAAAAGGCAAGACAAGTGTTTT--------------CAAA---GGTAGAAGATA---ATGC----------TGATCAGCCTTTTTctga----agtatt---taaa----aataatagaga--acAT---T-----------CGGACaagtacacaaaagaaaaaagtact i sorAra1.scaffold_231034 C 0 C 0 s proCap1.scaffold_30001 16489 165 - 22135 TTTAGCACAGCTGGTGG-GAAATCCGTGCAGGTGTCAGATGCTGCCTTAAGAAAGACAAGACAGGTGTTTT--------------CTGA---GATGGAAGATA---GTGC----------CCAGCAGCTTGTGTACAC----AGAATCCTGTCAC----AGTAACAAGGG--ACAT---T-----------CAAACAAGGTCACAAAAGAAAGTAAGGCT i proCap1.scaffold_30001 C 0 C 0 s loxAfr3.scaffold_11 62578974 162 - 67275361 TTTAGCACAGCAAGTGG-GAAATCTGTACAGGTGTCAGATGCTTCATTACAAAAGACAAGACAGGTGTTTT--------------CTGA---GATTGAAGAGA---GTAC----------CAAGTATCTCTTTTCCAA----ACTATCCTTTAAA----AGTAATGAAG-----AT---T-----------CAAACAAGTTCACCAAAGAAAAAAATACT i loxAfr3.scaffold_11 C 0 C 0 s choHof1.scaffold_37163 7318 162 - 13057 TTTAGCACAGCAAGTGG-GAAATTTGTACAAGTATCAGATGCTTCATTACAAAAGGCAAGTCAGGTATTTT--------------CTGA---GATAGAAGATA---GTGC----------CAAGCAGTTCTTTTCCAA----AGTATCCTTTAAA----ATTAATGAAGA--ACAT---T-----------CAGACAAATTCAC---AGAAGAAAGTACC i choHof1.scaffold_37163 C 0 C 0 s dasNov2.scaffold_18245 14882 162 - 37296 TTTAGCACAGCAAGTGG-AAAATCTGTACAAGTATCAGACACTTCATTACAAAAGGCAAGACAGATATTTT--------------CTGA---GACAGAAATTA---GTGC----------CAAGCAGTTCTTTTCCAA----AGTATCCTTTAGA----AGTAAT---GA--ACAT---T-----------CAGACCAATTTACAAAAGAAGAAAATAAT i dasNov2.scaffold_18245 C 0 C 0 s macEug1.Scaffold381358 340 162 + 1363 TTTTGTACAGCCAATGG-CAAACCTGTGCAAGTATCAGGTAATTCATTAAAGAAAGCCAgacaggtttttt--------------ctga---aatagaaaata---attc----------tgaGCAATTACTTTCCAT----GACATCCTTTAAA----GATAGTGAAAG--CAAT---C-----------CAGAAAcatt---aatagaagaaaatgcc i macEug1.Scaffold381358 C 0 C 0 s monDom5.chr4 304148438 156 + 435153693 TTTTGTACAGCAAATGG-CAAACCTGTACAAGTATCAGATAATTCATTAAAGAAAGCCAGACAAGTATTTT--------------CTGA---AATAGCAAATG---ATTC----------TGAGCAATTACTTTCCA-------------TTAAA----GGTAGTGAAAA--CCAT---C-----------CAGAAACACTAATAGGAGAAGAAAATGCC i monDom5.chr4 C 0 C 0 s ornAna1.Ultra336 845659 165 + 10157919 TTTAATACCGCAAGCGG-AAAACCCGTGCGGGTATCAGATGCTTCACTGAAGAAGGCAAAGCAAGTGTTTT--------------CTGC---AATAGAAAATC---ACTC----------TGAGCGACTGCCCTTTGT----AACATCTTTTAAA----GACACTGAAAG--TCAT---C-----------CAGAGAAGGTCATGGATGAAAGCAATCCT i ornAna1.Ultra336 C 0 C 0 s galGal3.chr1 22136643 179 - 200994015 TTCAGTACGGCAAGTGG-GAAGCCTGTGCAACTATCAGAAGAGTCGCTAAAGAAAGCTAGACAGCTCTTTT--------------CTGA---AATGGAAGGTAGCCATTCATCAGGGCTACAAGATGCACATTTGCTT----GAAGACGTTGAGA----AAT-CCACAAACCATGG---T-----------GAAGTATTTCCTAGAGAAATGCAGCTACT i galGal3.chr1 C 0 C 0 s taeGut1.chr1 50821092 182 + 118548696 tttagtACAGCAAGTGG-AAAGCCTGTACAGCTTTCAGAAGAGTCACTCAGGAAAGCTAGACAGctctttt--------------ctga---aatggaagATAGTCATTCACCACATGTACAAGAAGCATTTTTAGTT-GAGGAAGATGTTGAAA----AGT-CTAAAATGCACAT---T-----------GAAGTACTACCTAGGGAAATGCAGGTAGT i taeGut1.chr1 C 0 C 0 s anoCar1.scaffold_312 1391078 185 - 1725611 TTCAGCACAGCGAGTGG-AAAAGCTGTTCAGTTATCTGAAGAGTCATTGAAAAAAGCAAgacagttttttt--------------ctga---aatcGAAGATG---ATTCATTAGGTTGTCAA---ACACATGTATCA----GGTGGTGGTGACC----ATTACTGGAAAGCGTCT---TCTGTCAGGAACAAAGCCACCGCTAAAGAAAATAAACTTCT i anoCar1.scaffold_312 C 0 C 0 s xenTro2.scaffold_80 2044187 176 - 3128562 TTTAGTACTGCAAGTGG-CAAGACGGTGCAGTTGTCAGACGAGTCTTTGAAGAAAGCTAGGGTGATTTTTT--------------CTGA---AATAGATACTT---GTCCGTT-------GATGCAACAGCAGACTAATGAAAGCACTGTTGAAGAGATAGTAATAGGAGGAGGAA---T-------------GACAAAATCAAAACAGATGCCATTAAC i xenTro2.scaffold_80 I 4 C 0 s tetNig2.chr16 4699911 111 + 9031048 TTTCGTACAGCCAGTGGCAAGGCAGCAACCTGCTCGTCTGAA-GCCCTCCAGAAAGCTAAAGCGCTTTTTA--------------GTGA---CAT------CA---GTTC----------CAAT-------------G----AGAATACCGGACA----AGCAGACCA-----------T---------------------------------------- i tetNig2.chr16 C 0 C 0 s danRer6.chr15 32393696 147 + 47237297 TTTTCTACAGCAGGTGG-GAGGAAGATGGATATTTCTGTGACTGCACTGCAGAAGGCAAACAACCTCTTTAAAGATTGTGAAGAGGAGA---GTT------TA---GCTT----------CTAG-------------G----AGTCTTGCGCACC----AAGGCTTCA-----------C-----------TA-------CTGCCAGTGGTAAAAATGTT i danRer6.chr15 C 0 I 102 e dipOrd1.scaffold_47936 6489 3359 - 10608 I e echTel1.scaffold_282619 20187 28333 + 54172 I e oryLat2.chr14 9930930 2 + 33607196 I e gasAcu1.chrVII 19975244 0 + 27937443 I a score=-751512.000000 s hg19.chr13 32914585 52 + 115169878 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G s panTro2.chr13 32107466 52 + 115868456 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G i panTro2.chr13 C 0 C 0 s gorGor1.Supercontig_0026501 4042 52 + 8047 -GCTAT-------------ACGT-----------ACTCCAGAACATTTAAT-----AT--CCCAAAAAGGCTTTTCATATAAT-G i gorGor1.Supercontig_0026501 C 0 C 0 s ponAbe2.chr13 31875971 52 + 117095149 -GCTAT-------------ACAT-----------ACTCCAGAAAATTTAAC-----AT--CCCAAAAAGGCTTTTCATATAAT-G i ponAbe2.chr13 C 0 C 0 s rheMac2.chr17 11711910 55 + 94452569 -ACTAT-------------ACAT-----------ACTCCAAAACATTTAATA--TCAT--CCCAAAAAGACTTTTCACATAAT-G i rheMac2.chr17 C 0 C 0 s papHam1.scaffold8860 29487 55 - 91400 -ACTAT-------------ACAT-----------ACTCCAAAACATTTAATA--TCAT--CCCAAAAAGACTTTTCATATAAT-G i papHam1.scaffold8860 C 0 C 0 s calJac1.Contig1458 176165 54 + 405365 -GCTAC-------------ACAG-----------ATAGCAGAACATTTGATA--CCAT--CCCAAAAAGGCTTTTCATATAAT-- i calJac1.Contig1458 C 0 C 0 s tarSyr1.scaffold_132783 1146 55 - 6023 -ATGAT-------------GCAT-----------ACCCCAAAACATTTAATA--GCAC--CCCAAAAAGGCTTTTCACATAAT-G i tarSyr1.scaffold_132783 C 0 C 0 s micMur1.scaffold_6236 97361 52 + 100975 -ACAAT-------------GCAT-----------ATCC--CCAAATTTAAT-----ATCACCCCAAAAGGCTTTTCGTATAAT-G i micMur1.scaffold_6236 C 0 M 467 s otoGar1.scaffold_101144.1-52040 43517 52 - 52040 -GTAAT-------------TCAT-----------GTCCCACAAAAGTTAAT-----AT--CCCAAAAAGGCTTTTCATGCAAT-G i otoGar1.scaffold_101144.1-52040 C 0 C 0 s tupBel1.scaffold_131324.1-77451 11095 55 - 77451 -ATGAC-------------ACAT-----------ACTCCCCAGAATGTATTA--TCAC--CCAAAAAAGGCTTTTCATATAAT-A i tupBel1.scaffold_131324.1-77451 C 0 C 0 s rn4.chr12 42474772 55 - 46782294 -GTGGT-------------GCAT-----------AACACCCATGGTGTATTG--TCAC--TCCGAAAAACCCTCCCAGGCAAT-G i rn4.chr12 C 0 C 0 s mm9.chr5 151345299 55 + 152537259 -GTGGT-------------GCAT-----------AGCACCCAGGGTGTATTG--TCAC--TCCCAAAACCCCTCCCAGGCAAT-G i mm9.chr5 C 0 C 0 s cavPor3.scaffold_6 33813321 55 + 61187194 -GTAAT-------------GCGC-----------ACCCCCTCAAAAGTACCA--TCAC--CTCCGAAAAACTTTCACCATAGT-G i cavPor3.scaffold_6 C 0 C 0 s speTri1.scaffold_136871 52293 55 - 149453 -ATGGC-------------ACAT-----------GCCCCCCCAAACGTACTA--TCAC--CCGGGAAAAGCTTTCTGTGTAAC-A i speTri1.scaffold_136871 C 0 C 0 s oryCun2.chrUn0004 3065657 55 + 7969563 -ATGAC-------------AGAT-----------ATCCCAAAAAATTTACTG--TCAT--CTCAGAAAGACTTTTCAAATAAT-G i oryCun2.chrUn0004 C 0 C 0 s ochPri2.scaffold_63227 3445 52 + 7289 -GTGAC-------------AGAT-----------GGCCCAGAAAACACACTG-----T--TCCAGAAGGACGTTCCATATAAT-G i ochPri2.scaffold_63227 C 0 C 0 s vicPac1.scaffold_1303 214213 27 - 397986 -AAGAT-------------ACAT-----------ACCCCTCAAAATTTACTG--------------------------------- i vicPac1.scaffold_1303 C 0 C 0 s turTru1.scaffold_99052 59481 27 - 340450 -GTGAT-------------ACAT-----------ACCCCCCAAAATTTACTA--------------------------------- i turTru1.scaffold_99052 C 0 C 0 s bosTau4.chr12 56910362 28 - 85358539 -ATGAC-------------ACAT----------AACCCCCCCAAATTTACTA--------------------------------- i bosTau4.chr12 C 0 C 0 s equCab2.chr17 11530811 27 + 80757907 -ATGAT-------------ACAT-----------AGCCCCCAAAATTTGCTG--------------------------------- i equCab2.chr17 C 0 C 0 s felCat3.scaffold_141508 1124 29 + 43838 -ATGAT-------------ACAT-----------ACCCCCCAAAATTTACTATC------------------------------- i felCat3.scaffold_141508 C 0 I 913 s canFam2.chr25 43807640 29 - 54563659 -GTGAT-------------ATAT-----------ACCTCCCAAAATTTACTATC------------------------------- i canFam2.chr25 C 0 C 0 s myoLuc1.scaffold_166230 5560 27 - 15142 -ATGAT-------------ACAT-----------ATCCCCCCAAATTTG-------------------------CCA-------- i myoLuc1.scaffold_166230 C 0 C 0 s pteVam1.scaffold_6136 29425 27 - 97493 -GTGAT-------------ACGC-----------ACCCCCCAGAATGTC-------------------------CCG-------- i pteVam1.scaffold_6136 C 0 C 0 s eriEur1.scaffold_292860 9416 27 + 12208 -GTGGT-------------ACAT-----------ACTACCCCAAATTC----------------AAAA----------------- i eriEur1.scaffold_292860 C 0 C 0 s sorAra1.scaffold_231034 27384 24 + 64674 -gtAAT-------------ACAT-----------AGCGCTTCAAAATC-------------------A----------------- i sorAra1.scaffold_231034 C 0 C 0 s proCap1.scaffold_30001 16654 55 - 22135 -GTGAT-------------ACAC-----------ACCAAAGACAAATTGCCA--TCAC--CCCTAGCAGGCTTTTCATCTAGA-G i proCap1.scaffold_30001 C 0 C 0 s loxAfr3.scaffold_11 62579136 53 - 67275361 -GTGAT-------------ACAT-----------ACCAAAAACAAATTGCTA--CCAC--CCCAGGAAGGCTTTTCGTCTAG--- i loxAfr3.scaffold_11 C 0 C 0 s choHof1.scaffold_37163 7480 55 - 13057 -ATGAC-------------ACAC-----------ACCAACAACAATTTACCA--TTAC--CCCAAAAAGATTTTTTATATAA-TG i choHof1.scaffold_37163 C 0 C 0 s dasNov2.scaffold_18245 15044 52 - 37296 -ATGAC-------------AC--------------TTAGCAACAGTTTACCA--TCAT--CTCAAAAAGGCTTTTCATGTAA-TG i dasNov2.scaffold_18245 C 0 C 0 s macEug1.Scaffold381358 502 52 + 1363 -TTGTT-------------ACAT-----------GC-----AAAAACTAACCTATCAG--AAAAGAAAGACTATTTAAATAAT-A i macEug1.Scaffold381358 C 0 C 0 s monDom5.chr4 304148594 52 + 435153693 -ATGCT-------------TTAT-----------GC-----AAAAATCAACCTACCAG--CACAAAAAGACTATTTGAGTAAT-A i monDom5.chr4 C 0 C 0 s ornAna1.Ultra336 845824 36 + 10157919 -AACAG-------------AAGTGAAAAACCCCAAGTGCTACAAAAGCAC----------------------------------- i ornAna1.Ultra336 C 0 C 0 s galGal3.chr1 22136822 32 - 200994015 -GCTGCCAAGAGGGAAGGAGAAT-----------GCCAGCACGG----------------------------------------- i galGal3.chr1 C 0 C 0 s taeGut1.chr1 50821274 32 + 118548696 -ATCAtcaaaaggggaagaaaat-----------accAGCCCTG----------------------------------------- i taeGut1.chr1 C 0 C 0 s anoCar1.scaffold_312 1391263 32 - 1725611 -CATGTCCCAAGGGAAAATACTT-----------TCAAATGCAG----------------------------------------- i anoCar1.scaffold_312 C 0 C 0 s xenTro2.scaffold_80 2044363 22 - 3128562 -AACAG-------------AAAA-----------AGTCGAAACAACT-------------------------------------- i xenTro2.scaffold_80 C 0 C 0 s tetNig2.chr16 4700022 22 + 9031048 GCTGAT-------------CCGG-----------AACAAGAGAAGA--------------------------------------- i tetNig2.chr16 C 0 C 0 e dipOrd1.scaffold_47936 6489 3359 - 10608 I e echTel1.scaffold_282619 20187 28333 + 54172 I e oryLat2.chr14 9930930 2 + 33607196 I e gasAcu1.chrVII 19975244 0 + 27937443 I e danRer6.chr15 32393843 102 + 47237297 I