changeset 0:128ec4c44111 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netfilter commit 4babe88f84d0853e3a074fac19b62b457a59251b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/netfilter.xml	Thu Sep 19 06:23:49 2024 +0000
@@ -0,0 +1,82 @@
+<tool id="ucsc_netfilter" name="netFilter" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT">
+    <description>
+        Filter out parts of net
+    </description>
+    <macros>
+        <token name="@TOOL_VERSION@">469</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
+    </xrefs>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">ucsc-netfilter</requirement>
+    </requirements>
+    <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command>
+    <command detect_errors="exit_code"><![CDATA[
+    netFilter
+        '$in_net'
+        #if str($synteny.syn_filter) == "filtersyn"
+            $synteny.syntype
+            #if str($synteny.minSynScore)
+                -minSynScore=$synteny.minSynScore
+            #end if
+            #if str($synteny.minSynSize)
+                -minSynSize=$synteny.minSynSize
+            #end if
+            #if str($synteny.minSynAli)
+                -minSynAli=$synteny.minSynAli
+            #end if
+        #end if
+        #if str($minGap)
+            -minGap=$minGap
+        #end if
+        > '$out'
+    ]]></command>
+    <inputs>
+        <param name="in_net" format="ucsc.net" type="data" label="net dataset" help="" />
+
+        <conditional name="synteny">
+            <param name="syn_filter" type="select" label="Filter on synteny?">
+                <option value="skipsyn" selected="true">no</option>
+                <option value="filtersyn">yes</option>
+            </param>
+            <when value="skipsyn" />
+            <when value="filtersyn">
+                <param name="syntype" type="select" display="radio" label="Select synteny filter">
+                    <option value="-syn" selected="true">filter on synteny tuned for human/mouse (-syn)</option>
+                    <option value="-chimpSyn">filter on synteny tuned for human/chimp (-chimpSyn)</option>
+                    <option value="-nonsyn">do inverse filtering based on synteny tuned for human/mouse (-nonsyn)</option>
+                </param>
+                <param argument="-minSynScore" type="integer" optional="true" label="Min syntenic block score" help="default 200,000: covers 27,000 bases including 9,000 aligning--a very stringent requirement." />
+                <param argument="-minSynSize" type="integer" min="0" optional="true" label="Min syntenic block size" help="default 20,000" />
+                <param argument="-minSynAli" type="integer" min="0" optional="true" label="Min syntenic alignment size" help="default 10,000" />
+            </when>
+        </conditional>
+
+        <param argument="-minGap" type="integer" min="0" optional="true" label="Minimum gap" help="Restrict to those with gap size (tSize) >= minSize" />
+    </inputs>
+    <outputs>
+        <data name="out" format="ucsc.net" />
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="in_net" value="in.ucsc.net" />
+            <conditional name="synteny">
+                <param name="syn_filter" value="filtersyn" />
+                <param name="syntype" value="-chimpSyn" />
+            </conditional>
+            <param name="minGap" value="300" />
+            <output name="out" file="out.ucsc.net" />
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+`netFilter`_ is a tool to filter out parts of net. What passes filter goes to output. Note a net is a recursive data structure. If a parent fails to pass the filter, the children are not even considered.
+
+.. _netFilter: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
+    ]]>    </help>
+    <citations>
+        <citation type="doi">10.1093/bib/bbs038</citation>
+    </citations>
+</tool>

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/in.ucsc.net	Thu Sep 19 06:23:49 2024 +0000
@@ -0,0 +1,2000 @@
+##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+##gapPenalties=axtChain O=400 E=30
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+ fill 163694 94 mm10.chr1 + 131472418 94 id 3011603 score 4594 ali 94 qDup 94 type top
+ fill 164277 71 mm10.chr5 + 134263600 71 id 4830248 score 3491 ali 71 qDup 71 type top
+ fill 164687 147 mm10.chr5 + 134263664 147 id 956235 score 8521 ali 147 qDup 147 type top
+ fill 165880 80 mm10.chr5 + 134261839 80 id 2693138 score 4896 ali 80 qDup 80 type top
+ fill 168091 81 mm10.chr5 + 134265728 81 id 2093733 score 5640 ali 81 qDup 81 type top
+ fill 173748 56 mm10.chr5 + 134266538 56 id 3995369 score 3913 ali 56 qDup 56 type top
+ fill 173832 47 mm10.chr5 + 134266626 47 id 5535979 score 3169 ali 47 qDup 47 type top
+ fill 182695 56 mm10.chr17 + 66149262 56 id 4707155 score 3550 ali 56 qDup 56 type top
+ fill 183118 143 mm10.chr17 + 66149954 143 id 1379851 score 7070 ali 143 qDup 143 type top
+ fill 183504 77 mm10.chr17 + 66150342 77 id 4098882 score 3856 ali 77 qDup 77 type top
+ fill 183714 189 mm10.chr17 + 66150548 189 id 759314 score 9525 ali 189 qDup 189 type top
+ fill 184599 28 mm10.chr6 - 121524450 28 id 9297217 score 2076 ali 28 qDup 28 type top
+ fill 184630 87 mm10.chr6 - 121524363 87 id 1466861 score 6846 ali 87 qDup 87 type top
+ fill 185213 110 mm10.chr17 - 66119029 110 id 1464618 score 6852 ali 110 qDup 110 type top
+ fill 185323 42 mm10.chr17 - 66118981 42 id 6836372 score 2688 ali 42 qDup 42 type top
+ fill 185463 103 mm10.chr17 - 66118803 103 id 1733215 score 6257 ali 103 qDup 103 type top
+ fill 185794 65 mm10.chr17 - 66118574 65 id 6623645 score 2756 ali 65 qDup 60 type top
+ fill 186307 170 mm10.chr17 - 66118060 170 id 330846 score 13682 ali 170 qDup 169 type top
+ fill 186706 92 mm10.chr6 - 121522212 92 id 9477098 score 2041 ali 92 qDup 0 type top
+ fill 186833 122 mm10.chr6 - 121522069 122 id 6278026 score 2876 ali 122 qDup 120 type top
+ fill 187122 70 mm10.chr17 - 66117379 70 id 7780035 score 2419 ali 70 qDup 70 type top
+ fill 187361 232 mm10.chr17 - 66116956 232 id 268438 score 14831 ali 232 qDup 232 type top
+ fill 187749 65 mm10.chr17 - 66116701 65 id 2499428 score 5105 ali 65 qDup 65 type top
+ fill 187817 86 mm10.chr17 - 66116615 86 id 2158337 score 5545 ali 86 qDup 86 type top
+ fill 188119 152 mm10.chr17 - 66116254 152 id 455459 score 11988 ali 152 qDup 152 type top
+ fill 188393 92 mm10.chr17 - 66116053 92 id 2990665 score 4613 ali 92 qDup 92 type top
+ fill 188485 115 mm10.chr17 - 66115937 115 id 1062225 score 8086 ali 115 qDup 115 type top
+ fill 188780 138 mm10.chr17 - 66115654 138 id 782229 score 9391 ali 138 qDup 138 type top
+ fill 189015 87 mm10.chr6 - 121520177 87 id 4403472 score 3699 ali 87 qDup 87 type top
+ fill 190214 67 mm10.chr6 - 121518961 67 id 9574525 score 2023 ali 67 qDup 67 type top
+ fill 190764 49 mm10.chr6 - 121518517 49 id 9531515 score 2031 ali 49 qDup 49 type top
+ fill 194834 61 mm10.chr6 - 121511284 61 id 7485617 score 2497 ali 61 qDup 61 type top
+ fill 195247 199 mm10.chr17 - 66113832 199 id 410494 score 12532 ali 199 qDup 199 type top
+ fill 195560 76 mm10.chr6 - 121510575 76 id 5816903 score 3052 ali 76 qDup 69 type top
+ fill 195949 49 mm10.chr6 - 121510311 49 id 7094739 score 2609 ali 49 qDup 49 type top
+ fill 196021 62 mm10.chr6 - 121510227 62 id 3729424 score 4068 ali 62 qDup 62 type top
+ fill 196083 215 mm10.chr6 - 121510011 215 id 171774 score 17472 ali 215 qDup 215 type top
+ fill 196387 32 mm10.chr6 - 121509891 32 id 8722179 score 2196 ali 32 qDup 32 type top
+ fill 196977 118 mm10.chr6 - 121509147 118 id 8194223 score 2316 ali 118 qDup 118 type top
+ fill 206592 89 mm10.chr6 - 121499364 89 id 2993259 score 4610 ali 89 qDup 89 type top
+ fill 206771 107 mm10.chr6 - 121499158 107 id 2424410 score 5194 ali 107 qDup 107 type top
+ fill 206884 59 mm10.chr6 - 121499099 59 id 6195723 score 2906 ali 59 qDup 59 type top
+ fill 206943 71 mm10.chr6 - 121499027 71 id 6256481 score 2884 ali 71 qDup 71 type top
+ fill 207538 107 mm10.chr6 - 121498490 107 id 2739251 score 4849 ali 107 qDup 107 type top
+ fill 258526 55 mm10.chr13 + 120304160 55 id 831217 score 3831 ali 55 qDup 0 type top
+ fill 258581 336 mm10.chr7 + 31470957 336 id 89125 score 21647 ali 336 qDup 0 type top
+ fill 258922 89 mm10.chr6 + 143124950 91 id 126169 score 3676 ali 64 qDup 0 type top
+  gap 258936 25 mm10.chr6 + 143124964 27
+ fill 269688 75 mm10.chr1 + 176690484 75 id 4369174 score 3716 ali 75 qDup 75 type top
+ fill 269763 169 mm10.chr1 + 176690560 169 id 556783 score 10977 ali 169 qDup 169 type top
+ fill 269933 52 mm10.chr1 + 176690729 52 id 8168781 score 2322 ali 52 qDup 52 type top
+ fill 270068 80 mm10.chr1 + 176691066 80 id 4137190 score 3836 ali 80 qDup 80 type top
+ fill 271702 61 mm10.chr1 + 176692708 61 id 4366393 score 3718 ali 61 qDup 61 type top
+ fill 271911 48 mm10.chr1 + 176693360 48 id 7966016 score 2371 ali 48 qDup 48 type top
+ fill 272023 60 mm10.chr1 + 176693473 60 id 5218901 score 3310 ali 60 qDup 60 type top
+ fill 272084 45 mm10.chr1 + 176693533 45 id 6961071 score 2649 ali 45 qDup 45 type top
+ fill 272236 41 mm10.chr1 + 176693677 41 id 8236814 score 2306 ali 41 qDup 41 type top
+ fill 272669 73 mm10.chr1 + 176694040 73 id 9633532 score 2012 ali 73 qDup 73 type top
+ fill 273366 65 mm10.chr1 + 176694652 65 id 9036017 score 2129 ali 65 qDup 65 type top
+ fill 273500 61 mm10.chr1 + 176694797 61 id 5035657 score 3395 ali 61 qDup 61 type top
+ fill 273616 36 mm10.chr1 + 176694896 36 id 7572604 score 2474 ali 36 qDup 36 type top
+ fill 274756 95 mm10.chr1 + 176695454 95 id 2971522 score 4630 ali 95 qDup 95 type top
+ fill 274928 38 mm10.chr1 + 176695615 38 id 7694646 score 2441 ali 38 qDup 38 type top
+ fill 275212 53 mm10.chr1 + 176695937 53 id 9049346 score 2126 ali 53 qDup 53 type top
+ fill 276020 100 mm10.chr1 + 176696173 100 id 4474604 score 3664 ali 100 qDup 100 type top
+ fill 276120 35 mm10.chr1 + 176696276 35 id 7027070 score 2629 ali 35 qDup 35 type top
+ fill 276188 75 mm10.chr1 + 176696346 75 id 5387932 score 3234 ali 75 qDup 75 type top
+ fill 276408 92 mm10.chr1 + 176696564 92 id 5703548 score 3098 ali 92 qDup 92 type top
+ fill 276659 83 mm10.chr1 + 176696783 83 id 5189445 score 3324 ali 83 qDup 83 type top
+ fill 277035 71 mm10.chr1 + 176697277 71 id 8408876 score 2266 ali 71 qDup 71 type top
+ fill 277277 74 mm10.chr1 + 176697490 74 id 7523655 score 2487 ali 74 qDup 74 type top
+ fill 277387 45 mm10.chr1 + 176697582 45 id 7567561 score 2475 ali 45 qDup 45 type top
+ fill 277520 81 mm10.chr1 + 176697779 81 id 4075518 score 3869 ali 81 qDup 81 type top
+ fill 278802 93 mm10.chr1 + 176698286 93 id 7770740 score 2421 ali 93 qDup 93 type top
+ fill 278897 47 mm10.chr1 + 176698379 47 id 8885797 score 2160 ali 47 qDup 47 type top
+ fill 279009 131 mm10.chr1 + 176698484 131 id 1830718 score 6073 ali 131 qDup 131 type top
+ fill 279216 81 mm10.chr1 + 176698725 81 id 7367796 score 2530 ali 81 qDup 81 type top
+ fill 279300 117 mm10.chr1 + 176698806 117 id 1447772 score 6894 ali 117 qDup 117 type top
+ fill 283276 168 mm10.chr8 - 65740243 168 id 666215 score 10125 ali 168 qDup 168 type top
+ fill 283498 83 mm10.chr8 - 65740111 83 id 6704346 score 2730 ali 83 qDup 83 type top
+ fill 283601 60 mm10.chr8 - 65740031 60 id 5602859 score 3140 ali 60 qDup 60 type top
+ fill 283665 50 mm10.chr8 - 65739981 50 id 9426683 score 2051 ali 50 qDup 50 type top
+ fill 283862 82 mm10.chr8 - 65739776 82 id 6456525 score 2813 ali 82 qDup 82 type top
+ fill 295620 64 mm10.chr8 - 65730063 64 id 6743472 score 2717 ali 64 qDup 64 type top
+ fill 295757 51 mm10.chr8 - 65729948 51 id 8839776 score 2170 ali 51 qDup 51 type top
+ fill 296638 45 mm10.chr8 - 65729353 45 id 8722058 score 2196 ali 45 qDup 45 type top
+ fill 296745 77 mm10.chr8 - 65729215 77 id 4658298 score 3574 ali 77 qDup 77 type top
+ fill 296995 43 mm10.chr8 - 65729016 43 id 9192469 score 2097 ali 43 qDup 0 type top
+ fill 347984 188 mm10.chrX + 48889895 188 id 359381 score 13236 ali 188 qDup 0 type top
+ fill 348172 152 mm10.chr13 + 120304405 152 id 439089 score 11016 ali 152 qDup 0 type top
+ fill 348327 42 mm10.chr10 - 81716008 42 id 1489954 score 3204 ali 42 qDup 0 type top
+ fill 348369 46 mm10.chr4 - 32149782 46 id 712744 score 2291 ali 46 qDup 0 type top
+ fill 359349 92 mm10.chr11 - 121814790 92 id 2983853 score 4619 ali 92 qDup 92 type top
+ fill 360143 71 mm10.chr11 - 121814181 71 id 3079078 score 4537 ali 71 qDup 41 type top
+ fill 363832 77 mm10.chr11 - 121811489 77 id 4124442 score 3842 ali 77 qDup 77 type top
+ fill 367729 39 mm10.chr17 + 9651057 39 id 9527857 score 2032 ali 39 qDup 0 type top
+ fill 367891 72 mm10.chr17 + 9651192 72 id 4561451 score 3621 ali 72 qDup 71 type top
+ fill 378318 131 mm10.chr8 - 114664379 131 id 3526817 score 4199 ali 131 qDup 131 type top
+ fill 383937 68 mm10.chr1 + 176674067 68 id 8232417 score 2307 ali 68 qDup 68 type top
+ fill 384007 168 mm10.chr1 + 176674135 168 id 956826 score 8519 ali 168 qDup 168 type top
+ fill 384177 62 mm10.chr1 + 176674303 62 id 9072477 score 2121 ali 62 qDup 62 type top
+ fill 384240 64 mm10.chr1 + 176674365 64 id 9614104 score 2015 ali 64 qDup 64 type top
+ fill 385262 40 mm10.chr1 + 176675045 40 id 7393418 score 2523 ali 40 qDup 40 type top
+ fill 385442 56 mm10.chr1 + 176675280 56 id 8236792 score 2306 ali 56 qDup 56 type top
+ fill 385553 37 mm10.chr1 + 176675360 37 id 6988737 score 2641 ali 37 qDup 37 type top
+ fill 385650 62 mm10.chr1 + 176675447 62 id 7642501 score 2455 ali 62 qDup 62 type top
+ fill 385714 144 mm10.chr1 + 176675509 144 id 1197553 score 7611 ali 144 qDup 144 type top
+ fill 389928 83 mm10.chr1 + 176677555 83 id 2703349 score 4885 ali 83 qDup 83 type top
+ fill 390024 108 mm10.chr1 + 176677653 108 id 2847551 score 4743 ali 108 qDup 108 type top
+ fill 390180 90 mm10.chr1 + 176677805 90 id 4200888 score 3802 ali 90 qDup 90 type top
+ fill 397289 72 mm10.chr1 + 176687150 72 id 6332570 score 2856 ali 72 qDup 0 type top
+ fill 397534 74 mm10.chr1 + 176687330 74 id 4187541 score 3809 ali 74 qDup 0 type top
+ fill 397928 70 mm10.chr1 + 176687680 70 id 8611343 score 2220 ali 70 qDup 0 type top
+ fill 398084 102 mm10.chr1 + 176687806 102 id 3592741 score 4155 ali 102 qDup 0 type top
+ fill 405554 65 mm10.chr1 + 176692704 65 id 4559997 score 3622 ali 65 qDup 65 type top
+ fill 405768 48 mm10.chr1 + 176693360 48 id 8480911 score 2249 ali 48 qDup 48 type top
+ fill 405840 40 mm10.chr1 + 176693424 40 id 8468315 score 2252 ali 40 qDup 40 type top
+ fill 405880 60 mm10.chr1 + 176693473 60 id 5802701 score 3057 ali 60 qDup 60 type top
+ fill 405941 45 mm10.chr1 + 176693533 45 id 6961069 score 2649 ali 45 qDup 45 type top
+ fill 406093 41 mm10.chr1 + 176693677 41 id 8236816 score 2306 ali 41 qDup 41 type top
+ fill 406480 52 mm10.chr1 + 176693999 52 id 9028807 score 2130 ali 52 qDup 52 type top
+ fill 407218 68 mm10.chr1 + 176694649 68 id 8346142 score 2280 ali 68 qDup 68 type top
+ fill 407286 69 mm10.chr1 + 176694721 69 id 9649174 score 2009 ali 69 qDup 69 type top
+ fill 407355 61 mm10.chr1 + 176694797 61 id 5054855 score 3386 ali 61 qDup 61 type top
+ fill 407471 36 mm10.chr1 + 176694896 36 id 7572600 score 2474 ali 36 qDup 36 type top
+ fill 408609 95 mm10.chr1 + 176695454 95 id 2971525 score 4630 ali 95 qDup 95 type top
+ fill 408781 38 mm10.chr1 + 176695615 38 id 7694645 score 2441 ali 38 qDup 38 type top
+ fill 409065 55 mm10.chr1 + 176695937 55 id 9161274 score 2103 ali 55 qDup 55 type top
+ fill 409856 100 mm10.chr1 + 176696173 100 id 4232688 score 3786 ali 100 qDup 100 type top
+ fill 409956 35 mm10.chr1 + 176696276 35 id 7060183 score 2620 ali 35 qDup 35 type top
+ fill 410024 75 mm10.chr1 + 176696346 75 id 5387934 score 3234 ali 75 qDup 75 type top
+ fill 410244 92 mm10.chr1 + 176696564 92 id 5935365 score 3004 ali 92 qDup 92 type top
+ fill 410495 83 mm10.chr1 + 176696783 83 id 4709833 score 3549 ali 83 qDup 83 type top
+ fill 410794 29 mm10.chr1 + 176697214 29 id 9255166 score 2084 ali 29 qDup 0 type top
+ fill 410872 71 mm10.chr1 + 176697277 71 id 8408875 score 2266 ali 71 qDup 71 type top
+ fill 411114 74 mm10.chr1 + 176697490 74 id 7065691 score 2618 ali 74 qDup 74 type top
+ fill 411224 45 mm10.chr1 + 176697582 45 id 7567516 score 2475 ali 45 qDup 45 type top
+ fill 411357 81 mm10.chr1 + 176697779 81 id 4325525 score 3738 ali 81 qDup 81 type top
+ fill 412645 81 mm10.chr1 + 176698286 81 id 8994774 score 2137 ali 81 qDup 81 type top
+ fill 412728 59 mm10.chr1 + 176698367 59 id 7539106 score 2483 ali 59 qDup 59 type top
+ fill 412852 131 mm10.chr1 + 176698484 131 id 1707721 score 6308 ali 131 qDup 131 type top
+ fill 413123 78 mm10.chr1 + 176698728 78 id 7047121 score 2623 ali 78 qDup 78 type top
+ fill 413204 117 mm10.chr1 + 176698806 117 id 1396713 score 7025 ali 117 qDup 117 type top
+ fill 421429 55 mm10.chr2 + 111789830 55 id 5768593 score 3071 ali 55 qDup 55 type top
+ fill 421508 46 mm10.chr2 + 111789908 46 id 9156454 score 2104 ali 46 qDup 46 type top
+ fill 421558 42 mm10.chr2 + 111789965 42 id 8549711 score 2234 ali 42 qDup 42 type top
+ fill 421601 137 mm10.chr2 + 111790007 137 id 1431701 score 6934 ali 137 qDup 137 type top
+ fill 421780 84 mm10.chr2 + 111727065 84 id 4195471 score 3805 ali 84 qDup 84 type top
+ fill 422054 74 mm10.chr2 + 111727232 74 id 8168469 score 2322 ali 74 qDup 74 type top
+ fill 422195 71 mm10.chr2 + 111790463 71 id 5196359 score 3321 ali 71 qDup 71 type top
+ fill 422336 65 mm10.chr2 + 111727523 65 id 8283641 score 2295 ali 65 qDup 65 type top
+ fill 422802 48 mm10.chr2 + 111790922 48 id 9035573 score 2129 ali 48 qDup 48 type top
+ fill 422937 46 mm10.chr2 + 111791044 46 id 7945683 score 2377 ali 46 qDup 46 type top
+ fill 423197 59 mm10.chr2 + 111791341 59 id 8549708 score 2234 ali 59 qDup 59 type top
+ fill 439763 41 mm10.chr19 + 46599110 41 id 6665189 score 2743 ali 41 qDup 41 type top
+ fill 439823 43 mm10.chr19 + 46599161 43 id 8411662 score 2265 ali 43 qDup 41 type top
+ fill 439866 90 mm10.chr19 + 46599213 90 id 1784342 score 6159 ali 90 qDup 89 type top
+ fill 439956 38 mm10.chr19 + 46644362 38 id 3071351 score 3453 ali 38 qDup 38 type top
+ fill 439997 55 mm10.chr19 + 46644400 55 id 3137570 score 4408 ali 55 qDup 55 type top
+ fill 440052 69 mm10.chr19 + 46652473 69 id 2212744 score 5468 ali 69 qDup 69 type top
+ fill 440121 87 mm10.chr19 + 46652548 87 id 2122293 score 5597 ali 87 qDup 87 type top
+ fill 440208 62 mm10.chr19 + 46653972 62 id 3436036 score 3944 ali 62 qDup 62 type top
+ fill 440290 40 mm10.chrX + 8903662 40 id 7163134 score 2589 ali 40 qDup 40 type top
+ fill 440352 82 mm10.chrX + 8903721 82 id 2038270 score 5725 ali 82 qDup 82 type top
+ fill 440524 72 mm10.chr19 + 46656567 72 id 4294786 score 3754 ali 72 qDup 72 type top
+ fill 440691 64 mm10.chrX + 8903976 64 id 4927198 score 3446 ali 64 qDup 64 type top
+ fill 447353 50 mm10.chrX + 8904183 50 id 6188841 score 2908 ali 50 qDup 50 type top
+ fill 447451 48 mm10.chrX + 8904279 48 id 8213071 score 2312 ali 48 qDup 48 type top
+ fill 447658 54 mm10.chrX + 8904420 54 id 6230375 score 2893 ali 54 qDup 54 type top
+ fill 447904 83 mm10.chr6 + 75183490 83 id 2280923 score 5375 ali 83 qDup 83 type top
+ fill 448011 45 mm10.chrX + 8904597 45 id 7182908 score 2583 ali 45 qDup 45 type top
+ fill 448056 30 mm10.chrX + 8904657 30 id 8901898 score 2157 ali 30 qDup 30 type top
+ fill 450728 1002 mm10.chr2 + 111813774 1002 id 1713 score 67341 ali 1002 qDup 1002 type top
+ fill 475061 64 mm10.chr8 - 65730063 64 id 6743533 score 2717 ali 64 qDup 64 type top
+ fill 475198 51 mm10.chr8 - 65729948 51 id 8839775 score 2170 ali 51 qDup 51 type top
+ fill 476079 45 mm10.chr8 - 65729353 45 id 8722042 score 2196 ali 45 qDup 45 type top
+ fill 476186 77 mm10.chr8 - 65729215 77 id 4408941 score 3696 ali 77 qDup 77 type top
+ fill 478038 132 mm10.chr8 - 65727694 132 id 1485928 score 6799 ali 132 qDup 132 type top
+ fill 478171 37 mm10.chr8 - 65727657 37 id 6025928 score 2969 ali 37 qDup 37 type top
+ fill 478215 61 mm10.chr8 - 65727596 61 id 7297826 score 2550 ali 61 qDup 61 type top
+ fill 479853 69 mm10.chr8 - 65723468 69 id 6642132 score 2750 ali 69 qDup 69 type top
+ fill 479950 95 mm10.chr8 - 65723359 95 id 8839779 score 2170 ali 95 qDup 95 type top
+ fill 480417 46 mm10.chr8 - 65723003 46 id 7063303 score 2619 ali 46 qDup 46 type top
+ fill 480931 55 mm10.chr8 - 65722796 55 id 4612652 score 3596 ali 55 qDup 55 type top
+ fill 481014 43 mm10.chr8 - 65722727 43 id 7591813 score 2469 ali 43 qDup 43 type top
+ fill 483370 77 mm10.chr5 + 129676301 77 id 4222489 score 3791 ali 77 qDup 77 type top
+ fill 483497 71 mm10.chr5 + 129676422 71 id 7905096 score 2387 ali 71 qDup 71 type top
+ fill 483688 37 mm10.chr5 + 129676542 37 id 8283060 score 2295 ali 37 qDup 37 type top
+ fill 485027 189 mm10.chr5 + 129683488 189 id 484627 score 11671 ali 189 qDup 189 type top
+ fill 487150 51 mm10.chr7 + 25284847 51 id 5648917 score 3121 ali 51 qDup 51 type top
+ fill 487213 69 mm10.chr7 + 25284929 69 id 2850278 score 4741 ali 69 qDup 69 type top
+ fill 487282 172 mm10.chr7 + 25285078 172 id 563761 score 10916 ali 172 qDup 172 type top
+ fill 487454 62 mm10.chr7 + 25285251 62 id 3317382 score 4348 ali 62 qDup 62 type top
+ fill 487516 130 mm10.chr7 + 25285409 130 id 965658 score 8480 ali 130 qDup 130 type top
+ fill 487680 35 mm10.chr7 + 25285666 35 id 6953701 score 2652 ali 35 qDup 35 type top
+ fill 487720 95 mm10.chr7 + 25285701 95 id 1447569 score 6895 ali 95 qDup 95 type top
+ fill 487848 67 mm10.chr7 + 25285939 67 id 2422993 score 5196 ali 67 qDup 67 type top
+ fill 487916 56 mm10.chr7 + 25286006 56 id 4224688 score 3724 ali 56 qDup 56 type top
+ fill 487972 58 mm10.chr7 + 25286805 58 id 3577110 score 4165 ali 58 qDup 58 type top
+ fill 488030 61 mm10.chr7 + 25286871 61 id 3368077 score 4310 ali 61 qDup 61 type top
+ fill 488091 72 mm10.chr7 + 25286933 72 id 2687984 score 4901 ali 72 qDup 72 type top
+ fill 488163 95 mm10.chr7 + 25287096 95 id 1622254 score 6487 ali 95 qDup 95 type top
+ fill 488272 88 mm10.chr7 + 25287214 88 id 3092546 score 4525 ali 88 qDup 88 type top
+ fill 488382 60 mm10.chr7 + 25287748 60 id 3248257 score 4400 ali 60 qDup 60 type top
+ fill 488442 44 mm10.chr7 + 25287810 44 id 4796351 score 3507 ali 44 qDup 44 type top
+ fill 488486 48 mm10.chr7 + 25288074 48 id 6038016 score 2965 ali 48 qDup 48 type top
+ fill 488534 62 mm10.chr7 + 25288123 62 id 3829476 score 4008 ali 62 qDup 62 type top
+ fill 488632 115 mm10.chr7 + 25288217 115 id 1469325 score 6840 ali 115 qDup 110 type top
+ fill 488747 137 mm10.chr7 + 25288333 137 id 1215215 score 7554 ali 137 qDup 137 type top
+ fill 488988 136 mm10.chr7 + 25292648 136 id 1023686 score 8237 ali 136 qDup 136 type top
+ fill 489132 53 mm10.chr7 + 25292966 53 id 6827463 score 2691 ali 53 qDup 53 type top
+ fill 489206 43 mm10.chr7 + 25293042 43 id 5435819 score 3213 ali 43 qDup 43 type top
+ fill 489252 58 mm10.chr7 + 25293169 58 id 3668267 score 4107 ali 58 qDup 58 type top
+ fill 489337 36 mm10.chr7 + 25293369 36 id 7142000 score 2595 ali 36 qDup 36 type top
+ fill 489374 37 mm10.chr7 + 25293405 37 id 7951943 score 2375 ali 37 qDup 37 type top
+ fill 489560 66 mm10.chr7 - 25289132 66 id 2172040 score 5525 ali 66 qDup 66 type top
+ fill 489626 56 mm10.chr7 - 25289075 56 id 3489510 score 4224 ali 56 qDup 56 type top
+ fill 489719 36 mm10.chr7 + 25293333 36 id 7724084 score 2434 ali 36 qDup 36 type top
+ fill 489755 66 mm10.chr7 + 25293377 66 id 3627151 score 4133 ali 66 qDup 66 type top
+ fill 489821 47 mm10.chr7 + 25293444 47 id 5232674 score 3304 ali 47 qDup 47 type top
+ fill 489919 50 mm10.chr18 - 70907345 50 id 5977150 score 2988 ali 50 qDup 45 type top
+ fill 490397 86 mm10.chr7 + 25293714 86 id 2754032 score 4835 ali 86 qDup 86 type top
+ fill 490483 64 mm10.chr7 + 25293806 64 id 4825896 score 3493 ali 64 qDup 64 type top
+ fill 490580 38 mm10.chr7 + 25293908 38 id 5684672 score 3106 ali 38 qDup 38 type top
+ fill 490618 40 mm10.chr7 + 25293947 40 id 6989304 score 2641 ali 40 qDup 40 type top
+ fill 490669 150 mm10.chr7 + 25293994 150 id 694137 score 9933 ali 150 qDup 150 type top
+ fill 497301 80 mm10.chrX - 10697218 80 id 7534955 score 2484 ali 80 qDup 80 type top
+ fill 497407 60 mm10.chr6 - 127282269 60 id 5572794 score 3153 ali 60 qDup 60 type top
+ fill 497482 35 mm10.chrX - 10697095 35 id 8793085 score 2180 ali 35 qDup 35 type top
+ fill 497517 85 mm10.chr6 - 127282140 85 id 2687000 score 4902 ali 85 qDup 85 type top
+ fill 497654 106 mm10.chr17 - 87433949 106 id 2221211 score 5456 ali 106 qDup 106 type top
+ fill 518174 32 mm10.chr1 + 131467060 32 id 8842354 score 2169 ali 32 qDup 32 type top
+ fill 518320 70 mm10.chr1 + 131467189 70 id 3177812 score 4456 ali 70 qDup 70 type top
+ fill 518462 91 mm10.chr1 + 131467332 91 id 2464691 score 5146 ali 91 qDup 91 type top
+ fill 518609 51 mm10.chr1 + 131467478 51 id 8262801 score 2300 ali 51 qDup 51 type top
+ fill 518790 66 mm10.chr1 + 131467630 66 id 5045771 score 3390 ali 66 qDup 66 type top
+ fill 518965 86 mm10.chr1 + 131467801 86 id 3684099 score 4097 ali 86 qDup 86 type top
+ fill 519109 44 mm10.chr1 + 131467926 44 id 7782495 score 2418 ali 44 qDup 44 type top
+ fill 519191 76 mm10.chr1 + 131468006 76 id 5161831 score 3336 ali 76 qDup 76 type top
+ fill 519273 102 mm10.chr1 + 131468082 102 id 2144659 score 5564 ali 102 qDup 102 type top
+ fill 519574 42 mm10.chr1 + 131468357 42 id 8186354 score 2318 ali 42 qDup 42 type top
+ fill 519617 49 mm10.chr1 + 131468399 49 id 6490846 score 2801 ali 49 qDup 49 type top
+ fill 519671 63 mm10.chr1 + 131468598 63 id 5656393 score 3117 ali 63 qDup 63 type top
+ fill 520186 43 mm10.chr1 + 131469146 43 id 9247689 score 2086 ali 43 qDup 43 type top
+ fill 521313 75 mm10.chr1 + 131470694 75 id 4209955 score 3797 ali 75 qDup 75 type top
+ fill 521472 77 mm10.chr1 + 131471561 77 id 3748443 score 4057 ali 77 qDup 77 type top
+ fill 521618 51 mm10.chr1 + 131471692 51 id 6858239 score 2681 ali 51 qDup 51 type top
+ fill 521810 57 mm10.chr1 + 131471854 57 id 7991497 score 2365 ali 57 qDup 57 type top
+ fill 521882 93 mm10.chr1 + 131471936 93 id 2548260 score 5051 ali 93 qDup 93 type top
+ fill 522002 41 mm10.chr1 + 131472055 41 id 7306454 score 2548 ali 41 qDup 41 type top
+ fill 522161 53 mm10.chr1 + 131472188 53 id 4796508 score 3507 ali 53 qDup 53 type top
+ fill 522290 94 mm10.chr1 + 131472418 94 id 3011594 score 4594 ali 94 qDup 94 type top
+ fill 522873 71 mm10.chr5 + 134263600 71 id 4830247 score 3491 ali 71 qDup 71 type top
+ fill 523283 147 mm10.chr5 + 134263664 147 id 956234 score 8521 ali 147 qDup 147 type top
+ fill 524476 80 mm10.chr5 + 134261839 80 id 2693139 score 4896 ali 80 qDup 80 type top
+ fill 526687 81 mm10.chr5 + 134265728 81 id 2243135 score 5426 ali 81 qDup 81 type top
+ fill 532343 56 mm10.chr5 + 134266538 56 id 3995374 score 3913 ali 56 qDup 56 type top
+ fill 532427 47 mm10.chr5 + 134266626 47 id 5535982 score 3169 ali 47 qDup 47 type top
+ fill 588121 92 mm10.chr11 - 121814790 92 id 2983851 score 4619 ali 92 qDup 92 type top
+ fill 588946 41 mm10.chr11 - 121814181 41 id 6713990 score 2727 ali 41 qDup 41 type top
+ fill 592896 77 mm10.chr11 - 121811489 77 id 4124440 score 3842 ali 77 qDup 77 type top
+ fill 596944 71 mm10.chr17 + 9651192 71 id 4749410 score 3530 ali 71 qDup 71 type top
+ fill 606509 131 mm10.chr8 - 114664379 131 id 3526779 score 4199 ali 131 qDup 131 type top
+ fill 613827 68 mm10.chr1 + 176674067 68 id 8232425 score 2307 ali 68 qDup 68 type top
+ fill 613897 168 mm10.chr1 + 176674135 168 id 929802 score 8641 ali 168 qDup 168 type top
+ fill 614067 62 mm10.chr1 + 176674303 62 id 9072510 score 2121 ali 62 qDup 62 type top
+ fill 614130 64 mm10.chr1 + 176674365 64 id 8994808 score 2137 ali 64 qDup 64 type top
+ fill 615152 40 mm10.chr1 + 176675045 40 id 7393407 score 2523 ali 40 qDup 40 type top
+ fill 615332 56 mm10.chr1 + 176675280 56 id 8236830 score 2306 ali 56 qDup 56 type top
+ fill 615443 37 mm10.chr1 + 176675360 37 id 6602184 score 2763 ali 37 qDup 37 type top
+ fill 615540 62 mm10.chr1 + 176675447 62 id 7642507 score 2455 ali 62 qDup 62 type top
+ fill 615604 144 mm10.chr1 + 176675509 144 id 1197514 score 7611 ali 144 qDup 144 type top
+ fill 619818 83 mm10.chr1 + 176677555 83 id 2615542 score 4977 ali 83 qDup 83 type top
+ fill 619914 108 mm10.chr1 + 176677653 108 id 2847553 score 4743 ali 108 qDup 108 type top
+ fill 620070 90 mm10.chr1 + 176677805 90 id 4200885 score 3802 ali 90 qDup 90 type top
+ fill 629080 352 mm10.chrM + 3354 352 id 247130 score 15305 ali 352 qDup 0 type top
+ fill 629433 122 mm10.chrM + 3706 122 id 892749 score 8814 ali 122 qDup 0 type top
+ fill 629571 51 mm10.chrM + 3844 51 id 3108563 score 4512 ali 51 qDup 0 type top
+ fill 629622 271 mm10.chrM + 3896 271 id 704730 score 9863 ali 271 qDup 0 type top
+ fill 629928 83 mm10.chrM + 4202 83 id 3771437 score 4043 ali 83 qDup 0 type top
+ fill 630027 277 mm10.chrM + 4301 277 id 767403 score 9476 ali 277 qDup 0 type top
+ fill 630339 323 mm10.chr2 - 22590038 323 id 718381 score 9776 ali 323 qDup 0 type top
+ fill 630697 53 mm10.chr9 - 123107433 53 id 7787759 score 2417 ali 53 qDup 0 type top
+ fill 630752 88 mm10.chr6 - 120475983 88 id 2993254 score 4610 ali 88 qDup 0 type top
+ fill 630840 42 mm10.chr5 + 60042970 42 id 5137923 score 2466 ali 42 qDup 0 type top
+ fill 630884 59 mm10.chr2 - 22589771 59 id 4911529 score 3453 ali 59 qDup 0 type top
+ fill 630943 52 mm10.chrM + 5204 52 id 5328606 score 2323 ali 52 qDup 0 type top
+ fill 631008 36 mm10.chr9 + 15321569 36 id 6950206 score 2653 ali 36 qDup 0 type top
+ fill 631073 786 mm10.chr2 - 22588861 786 id 7377 score 45138 ali 786 qDup 0 type top
+ fill 631862 847 mm10.chrM + 6115 847 id 5757 score 48913 ali 847 qDup 0 type top
+ fill 632709 47 mm10.chr9 - 93175342 47 id 3320727 score 2836 ali 47 qDup 0 type top
+ fill 632756 611 mm10.chr1 - 24614954 611 id 35443 score 28725 ali 611 qDup 0 type top
+ fill 633367 48 mm10.chr2 - 22587313 48 id 6304613 score 2808 ali 48 qDup 0 type top
+ fill 633479 1444 mm10.chrM + 7713 1441 id 2696 score 60950 ali 1268 qDup 0 type top
+  gap 633505 176 mm10.chrM + 7739 173
+   fill 633521 100 mm10.chr1 - 24614725 100 id 4566466 score 3619 ali 100 qDup 0 type nonSyn
+ fill 639210 75 mm10.chr1 + 176690484 75 id 4387950 score 3707 ali 75 qDup 75 type top
+ fill 639285 169 mm10.chr1 + 176690560 169 id 557814 score 10968 ali 169 qDup 169 type top
+ fill 639455 52 mm10.chr1 + 176690729 52 id 8486474 score 2248 ali 52 qDup 52 type top
+ fill 639590 80 mm10.chr1 + 176691066 80 id 4137187 score 3836 ali 80 qDup 80 type top
+ fill 641304 65 mm10.chr1 + 176692704 65 id 4560005 score 3622 ali 65 qDup 65 type top
+ fill 641518 48 mm10.chr1 + 176693360 48 id 8480898 score 2249 ali 48 qDup 48 type top
+ fill 641590 40 mm10.chr1 + 176693424 40 id 8468307 score 2252 ali 40 qDup 40 type top
+ fill 641630 60 mm10.chr1 + 176693473 60 id 5492399 score 3188 ali 60 qDup 60 type top
+ fill 641691 45 mm10.chr1 + 176693533 45 id 6961067 score 2649 ali 45 qDup 45 type top
+ fill 641843 41 mm10.chr1 + 176693677 41 id 8236819 score 2306 ali 41 qDup 41 type top
+ fill 642230 52 mm10.chr1 + 176693999 52 id 9028811 score 2130 ali 52 qDup 52 type top
+ fill 642968 68 mm10.chr1 + 176694649 68 id 8346147 score 2280 ali 68 qDup 68 type top
+ fill 643036 69 mm10.chr1 + 176694721 69 id 9649146 score 2009 ali 69 qDup 69 type top
+ fill 643105 61 mm10.chr1 + 176694797 61 id 5054934 score 3386 ali 61 qDup 61 type top
+ fill 643221 36 mm10.chr1 + 176694896 36 id 7572606 score 2474 ali 36 qDup 36 type top
+ fill 644360 95 mm10.chr1 + 176695454 95 id 2971526 score 4630 ali 95 qDup 95 type top
+ fill 644532 38 mm10.chr1 + 176695615 38 id 7694629 score 2441 ali 38 qDup 38 type top
+ fill 644816 55 mm10.chr1 + 176695937 55 id 9161271 score 2103 ali 55 qDup 55 type top
+ fill 648400 81 mm10.chr1 + 176698286 81 id 8994807 score 2137 ali 81 qDup 81 type top
+ fill 648483 59 mm10.chr1 + 176698367 59 id 7539104 score 2483 ali 59 qDup 59 type top
+ fill 648607 131 mm10.chr1 + 176698484 131 id 1769977 score 6186 ali 131 qDup 131 type top
+ fill 648878 78 mm10.chr1 + 176698728 78 id 7047123 score 2623 ali 78 qDup 78 type top
+ fill 648959 117 mm10.chr1 + 176698806 117 id 1396714 score 7025 ali 117 qDup 117 type top
+ fill 657170 55 mm10.chr2 + 111789830 55 id 5768601 score 3071 ali 55 qDup 55 type top
+ fill 657249 46 mm10.chr2 + 111789908 46 id 9156484 score 2104 ali 46 qDup 46 type top
+ fill 657299 42 mm10.chr2 + 111789965 42 id 8549693 score 2234 ali 42 qDup 42 type top
+ fill 657342 137 mm10.chr2 + 111790007 137 id 1431700 score 6934 ali 137 qDup 137 type top
+ fill 657521 84 mm10.chr2 + 111727065 84 id 4195460 score 3805 ali 84 qDup 84 type top
+ fill 657795 74 mm10.chr2 + 111727232 74 id 8168426 score 2322 ali 74 qDup 74 type top
+ fill 657936 71 mm10.chr2 + 111790463 71 id 5196370 score 3321 ali 71 qDup 71 type top
+ fill 658077 65 mm10.chr2 + 111727523 65 id 8281979 score 2295 ali 65 qDup 65 type top
+ fill 658543 48 mm10.chr2 + 111790922 48 id 9034660 score 2129 ali 48 qDup 48 type top
+ fill 658678 46 mm10.chr2 + 111791044 46 id 7945634 score 2377 ali 46 qDup 46 type top
+ fill 658938 59 mm10.chr2 + 111791341 59 id 8028237 score 2356 ali 59 qDup 59 type top
+ fill 674742 41 mm10.chr19 + 46599110 41 id 6665183 score 2743 ali 41 qDup 41 type top
+ fill 674802 41 mm10.chr19 + 46599161 41 id 8268445 score 2299 ali 41 qDup 41 type top
+ fill 674843 89 mm10.chr19 + 46599214 89 id 1838614 score 6059 ali 89 qDup 89 type top
+ fill 674932 38 mm10.chr19 + 46644362 38 id 3071344 score 3453 ali 38 qDup 38 type top
+ fill 674973 55 mm10.chr19 + 46644400 55 id 3137558 score 4408 ali 55 qDup 55 type top
+ fill 675028 69 mm10.chr19 + 46652473 69 id 2212746 score 5468 ali 69 qDup 69 type top
+ fill 675097 87 mm10.chr19 + 46652548 87 id 2122291 score 5597 ali 87 qDup 87 type top
+ fill 675184 62 mm10.chr19 + 46653972 62 id 3436033 score 3944 ali 62 qDup 62 type top
+ fill 675266 40 mm10.chrX + 8903662 40 id 7163135 score 2589 ali 40 qDup 40 type top
+ fill 675328 82 mm10.chrX + 8903721 82 id 2038269 score 5725 ali 82 qDup 82 type top
+ fill 675500 72 mm10.chr19 + 46656567 72 id 4061730 score 3876 ali 72 qDup 72 type top
+ fill 675667 64 mm10.chrX + 8903976 64 id 4927201 score 3446 ali 64 qDup 64 type top
+ fill 682329 50 mm10.chrX + 8904183 50 id 6188716 score 2908 ali 50 qDup 50 type top
+ fill 682427 48 mm10.chrX + 8904279 48 id 8213043 score 2312 ali 48 qDup 48 type top
+ fill 682634 54 mm10.chrX + 8904420 54 id 6230376 score 2893 ali 54 qDup 54 type top
+ fill 682880 83 mm10.chr6 + 75183490 83 id 2281393 score 5375 ali 83 qDup 83 type top
+ fill 682987 45 mm10.chrX + 8904597 45 id 7182905 score 2583 ali 45 qDup 45 type top
+ fill 683032 30 mm10.chrX + 8904657 30 id 8901876 score 2157 ali 30 qDup 30 type top
+ fill 685704 1002 mm10.chr2 + 111813774 1002 id 1714 score 67341 ali 1002 qDup 1002 type top
+ fill 710039 64 mm10.chr8 - 65730063 64 id 6743500 score 2717 ali 64 qDup 64 type top
+ fill 710176 51 mm10.chr8 - 65729948 51 id 8839778 score 2170 ali 51 qDup 51 type top
+ fill 711057 45 mm10.chr8 - 65729353 45 id 8722035 score 2196 ali 45 qDup 45 type top
+ fill 711164 77 mm10.chr8 - 65729215 77 id 4431283 score 3685 ali 77 qDup 77 type top
+ fill 712984 132 mm10.chr8 - 65727694 132 id 1485931 score 6799 ali 132 qDup 132 type top
+ fill 713117 37 mm10.chr8 - 65727657 37 id 6025922 score 2969 ali 37 qDup 37 type top
+ fill 713161 61 mm10.chr8 - 65727596 61 id 7297833 score 2550 ali 61 qDup 61 type top
+ fill 714849 69 mm10.chr8 - 65723468 69 id 6642131 score 2750 ali 69 qDup 69 type top
+ fill 714946 95 mm10.chr8 - 65723359 95 id 8839783 score 2170 ali 95 qDup 95 type top
+ fill 715413 46 mm10.chr8 - 65723003 46 id 7063323 score 2619 ali 46 qDup 46 type top
+ fill 715920 55 mm10.chr8 - 65722796 55 id 4612649 score 3596 ali 55 qDup 55 type top
+ fill 716003 43 mm10.chr8 - 65722727 43 id 7591819 score 2469 ali 43 qDup 43 type top
+ fill 718363 77 mm10.chr5 + 129676301 77 id 4222493 score 3791 ali 77 qDup 77 type top
+ fill 718490 71 mm10.chr5 + 129676422 71 id 7905090 score 2387 ali 71 qDup 71 type top
+ fill 718681 37 mm10.chr5 + 129676542 37 id 8283061 score 2295 ali 37 qDup 37 type top
+ fill 720019 189 mm10.chr5 + 129683488 189 id 484626 score 11671 ali 189 qDup 189 type top
+ fill 722141 51 mm10.chr7 + 25284847 51 id 6191030 score 2907 ali 51 qDup 51 type top
+ fill 722204 48 mm10.chr7 + 25284929 48 id 5553455 score 3161 ali 48 qDup 48 type top
+ fill 722279 172 mm10.chr7 + 25285078 172 id 579580 score 10785 ali 172 qDup 172 type top
+ fill 722451 62 mm10.chr7 + 25285251 62 id 3317380 score 4348 ali 62 qDup 62 type top
+ fill 722513 130 mm10.chr7 + 25285409 130 id 1016487 score 8266 ali 130 qDup 130 type top
+ fill 722677 35 mm10.chr7 + 25285666 35 id 6953699 score 2652 ali 35 qDup 35 type top
+ fill 722717 95 mm10.chr7 + 25285701 95 id 1447434 score 6895 ali 95 qDup 95 type top
+ fill 722845 67 mm10.chr7 + 25285939 67 id 2423004 score 5196 ali 67 qDup 67 type top
+ fill 722913 56 mm10.chr7 + 25286006 56 id 3850745 score 3925 ali 56 qDup 56 type top
+ fill 722969 58 mm10.chr7 + 25286805 58 id 3577116 score 4165 ali 58 qDup 58 type top
+ fill 723027 61 mm10.chr7 + 25286871 61 id 3556686 score 4179 ali 61 qDup 61 type top
+ fill 723088 72 mm10.chr7 + 25286933 72 id 2687994 score 4901 ali 72 qDup 72 type top
+ fill 723160 95 mm10.chr7 + 25287096 95 id 1622252 score 6487 ali 95 qDup 95 type top
+ fill 723269 88 mm10.chr7 + 25287214 88 id 2942360 score 4656 ali 88 qDup 88 type top
+ fill 723379 60 mm10.chr7 + 25287748 60 id 3248268 score 4400 ali 60 qDup 60 type top
+ fill 723439 44 mm10.chr7 + 25287810 44 id 4796350 score 3507 ali 44 qDup 44 type top
+ fill 723483 48 mm10.chr7 + 25288074 48 id 6038013 score 2965 ali 48 qDup 48 type top
+ fill 723531 62 mm10.chr7 + 25288123 62 id 3829466 score 4008 ali 62 qDup 62 type top
+ fill 723634 110 mm10.chr7 + 25288222 110 id 1437765 score 6919 ali 110 qDup 110 type top
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+ fill 723985 136 mm10.chr7 + 25292648 136 id 994371 score 8359 ali 136 qDup 136 type top
+ fill 724129 53 mm10.chr7 + 25292966 53 id 6827455 score 2691 ali 53 qDup 53 type top
+ fill 724203 43 mm10.chr7 + 25293042 43 id 5434872 score 3213 ali 43 qDup 43 type top
+ fill 724249 58 mm10.chr7 + 25293169 58 id 3668266 score 4107 ali 58 qDup 58 type top
+ fill 724334 36 mm10.chr7 + 25293369 36 id 7141998 score 2595 ali 36 qDup 36 type top
+ fill 724371 37 mm10.chr7 + 25293405 37 id 7951938 score 2375 ali 37 qDup 37 type top
+ fill 724557 66 mm10.chr7 - 25289132 66 id 2171370 score 5525 ali 66 qDup 66 type top
+ fill 724623 56 mm10.chr7 - 25289075 56 id 3307101 score 4355 ali 56 qDup 56 type top
+ fill 724716 36 mm10.chr7 + 25293333 36 id 7724083 score 2434 ali 36 qDup 36 type top
+ fill 724752 66 mm10.chr7 + 25293377 66 id 3627017 score 4133 ali 66 qDup 66 type top
+ fill 724818 47 mm10.chr7 + 25293444 47 id 5232680 score 3304 ali 47 qDup 47 type top
+ fill 724916 45 mm10.chr18 - 70907350 45 id 6237508 score 2890 ali 45 qDup 45 type top
+ fill 725400 86 mm10.chr7 + 25293714 86 id 2752940 score 4835 ali 86 qDup 86 type top
+ fill 725486 64 mm10.chr7 + 25293806 64 id 4826063 score 3493 ali 64 qDup 64 type top
+ fill 725583 38 mm10.chr7 + 25293908 38 id 5684671 score 3106 ali 38 qDup 38 type top
+ fill 725621 40 mm10.chr7 + 25293947 40 id 6989299 score 2641 ali 40 qDup 40 type top
+ fill 725672 150 mm10.chr7 + 25293994 150 id 694138 score 9933 ali 150 qDup 150 type top
+ fill 732209 76 mm10.chrX - 10697222 76 id 7672772 score 2447 ali 76 qDup 76 type top
+ fill 732315 60 mm10.chr6 - 127282269 60 id 5572793 score 3153 ali 60 qDup 60 type top
+ fill 732390 35 mm10.chrX - 10697095 35 id 8793090 score 2180 ali 35 qDup 35 type top
+ fill 732425 85 mm10.chr6 - 127282140 85 id 2687002 score 4902 ali 85 qDup 85 type top
+ fill 732562 106 mm10.chr17 - 87433949 106 id 2221210 score 5456 ali 106 qDup 106 type top
+ fill 732731 52 mm10.chr17 - 87433831 52 id 6859493 score 2681 ali 52 qDup 52 type top
+ fill 735615 80 mm10.chrX - 10697218 80 id 7534953 score 2484 ali 80 qDup 80 type top
+ fill 735721 60 mm10.chr6 - 127282269 60 id 5868475 score 3031 ali 60 qDup 60 type top
+ fill 735796 35 mm10.chrX - 10697095 35 id 8793089 score 2180 ali 35 qDup 35 type top
+ fill 735831 85 mm10.chr6 - 127282140 85 id 2687001 score 4902 ali 85 qDup 85 type top
+ fill 735968 106 mm10.chr17 - 87433949 106 id 2221212 score 5456 ali 106 qDup 106 type top
+ fill 736137 52 mm10.chr17 - 87433831 52 id 6859495 score 2681 ali 52 qDup 52 type top
+ fill 739054 57 mm10.chrX - 10697218 57 id 7074629 score 2615 ali 57 qDup 57 type top
+ fill 739137 60 mm10.chr6 - 127282269 60 id 5868477 score 3031 ali 60 qDup 60 type top
+ fill 739212 35 mm10.chrX - 10697095 35 id 8793084 score 2180 ali 35 qDup 35 type top
+ fill 739247 85 mm10.chr6 - 127282140 85 id 2686997 score 4902 ali 85 qDup 85 type top
+ fill 739384 106 mm10.chr17 - 87433949 106 id 2135031 score 5578 ali 106 qDup 106 type top
+ fill 739553 52 mm10.chr17 - 87433831 52 id 6859494 score 2681 ali 52 qDup 52 type top
+ fill 760043 32 mm10.chr1 + 131467060 32 id 8842352 score 2169 ali 32 qDup 32 type top
+ fill 760189 70 mm10.chr1 + 131467189 70 id 3177813 score 4456 ali 70 qDup 70 type top
+ fill 760331 91 mm10.chr1 + 131467332 91 id 2657866 score 4932 ali 91 qDup 91 type top
+ fill 760426 45 mm10.chr1 + 131467423 45 id 8695599 score 2201 ali 45 qDup 0 type top
+ fill 760479 50 mm10.chr1 + 131467479 50 id 8700396 score 2200 ali 50 qDup 50 type top
+ fill 760659 66 mm10.chr1 + 131467630 66 id 5541080 score 3167 ali 66 qDup 66 type top
+ fill 760834 86 mm10.chr1 + 131467801 86 id 3684096 score 4097 ali 86 qDup 86 type top
+ fill 760977 44 mm10.chr1 + 131467926 44 id 7782503 score 2418 ali 44 qDup 44 type top
+ fill 761059 76 mm10.chr1 + 131468006 76 id 5161846 score 3336 ali 76 qDup 76 type top
+ fill 761141 102 mm10.chr1 + 131468082 102 id 2237735 score 5433 ali 102 qDup 102 type top
+ fill 761442 42 mm10.chr1 + 131468357 42 id 8186342 score 2318 ali 42 qDup 42 type top
+ fill 761485 49 mm10.chr1 + 131468399 49 id 6490849 score 2801 ali 49 qDup 49 type top
+ fill 761539 63 mm10.chr1 + 131468598 63 id 5173172 score 3331 ali 63 qDup 63 type top
+ fill 762054 43 mm10.chr1 + 131469146 43 id 9247685 score 2086 ali 43 qDup 43 type top
+ fill 763177 75 mm10.chr1 + 131470694 75 id 4209953 score 3797 ali 75 qDup 75 type top
+ fill 763336 77 mm10.chr1 + 131471561 77 id 3615591 score 4140 ali 77 qDup 77 type top
+ fill 763482 51 mm10.chr1 + 131471692 51 id 6858235 score 2681 ali 51 qDup 51 type top
+ fill 763674 57 mm10.chr1 + 131471854 57 id 7991627 score 2365 ali 57 qDup 57 type top
+ fill 763746 93 mm10.chr1 + 131471936 93 id 2547557 score 5051 ali 93 qDup 93 type top
+ fill 763866 41 mm10.chr1 + 131472055 41 id 7306456 score 2548 ali 41 qDup 41 type top
+ fill 764025 53 mm10.chr1 + 131472188 53 id 4796510 score 3507 ali 53 qDup 53 type top
+ fill 764154 94 mm10.chr1 + 131472418 94 id 3011609 score 4594 ali 94 qDup 94 type top
+ fill 764737 71 mm10.chr5 + 134263600 71 id 4830246 score 3491 ali 71 qDup 71 type top
+ fill 765143 147 mm10.chr5 + 134263664 147 id 978186 score 8427 ali 147 qDup 147 type top
+ fill 766325 76 mm10.chr5 + 134261839 76 id 2844691 score 4746 ali 76 qDup 76 type top
+ fill 768539 81 mm10.chr5 + 134265728 81 id 2093722 score 5640 ali 81 qDup 81 type top
+ fill 774166 56 mm10.chr5 + 134266538 56 id 3768494 score 4044 ali 56 qDup 56 type top
+ fill 774250 47 mm10.chr5 + 134266626 47 id 5535968 score 3169 ali 47 qDup 47 type top
+ fill 778916 81 mm10.chr5 + 129908724 81 id 3059313 score 4553 ali 81 qDup 0 type top
+ fill 779042 46 mm10.chr5 + 129908856 46 id 5380875 score 3237 ali 46 qDup 0 type top
+ fill 781916 154 mm10.chr9 + 25277523 154 id 537639 score 11148 ali 154 qDup 0 type top
+ fill 782246 52 mm10.chr9 + 25277841 52 id 9564101 score 2025 ali 52 qDup 0 type top
+ fill 782302 43 mm10.chr9 + 25277893 43 id 8932770 score 2150 ali 43 qDup 0 type top
+ fill 782371 59 mm10.chr9 + 25279145 59 id 5881737 score 3025 ali 59 qDup 0 type top
+ fill 782569 88 mm10.chr9 + 25279253 88 id 3084920 score 4532 ali 88 qDup 0 type top
+ fill 782714 40 mm10.chr9 + 25279397 40 id 7821576 score 2408 ali 40 qDup 0 type top
+ fill 782857 90 mm10.chr9 + 25279713 90 id 4585154 score 3610 ali 90 qDup 0 type top
+ fill 783345 40 mm10.chr9 + 25280075 40 id 6852547 score 2683 ali 40 qDup 0 type top
+ fill 783489 33 mm10.chr9 + 25280199 33 id 8459014 score 2254 ali 33 qDup 0 type top
+ fill 789076 52 mm10.chr5 + 74431289 52 id 8212317 score 2312 ali 52 qDup 16 type top
+ fill 789128 85 mm10.chr5 + 74431356 85 id 8029207 score 2356 ali 85 qDup 85 type top
+ fill 789226 51 mm10.chr5 + 74431469 51 id 9645742 score 2009 ali 51 qDup 51 type top
+ fill 789562 146 mm10.chr5 + 74431325 146 id 5710557 score 3095 ali 146 qDup 131 type top
+ fill 789743 205 mm10.chr5 + 74431356 205 id 2425719 score 5192 ali 205 qDup 164 type top
+ fill 805789 110 mm10.chr8 - 13923916 110 id 1047953 score 8141 ali 110 qDup 0 type top
+ fill 806762 109 mm10.chr8 - 13923175 109 id 6000556 score 2979 ali 109 qDup 0 type top
+ fill 808563 77 mm10.chr8 - 13921867 77 id 2186527 score 5504 ali 77 qDup 0 type top
+ fill 808642 72 mm10.chr8 - 13921795 72 id 5869747 score 3030 ali 72 qDup 0 type top
+ fill 808815 48 mm10.chr8 - 13921636 48 id 7777461 score 2420 ali 48 qDup 0 type top
+ fill 810050 579 mm10.chr8 - 13920488 576 id 2641529 score 4949 ali 109 qDup 0 type top
+  gap 810128 470 mm10.chr8 - 13920519 467
+   fill 810131 50 mm10.chr8 - 13920936 50 id 4502725 score 3650 ali 50 qOver 50 qFar 0 qDup 0 type syn
+ fill 810699 725 mm10.chr8 - 13916969 776 id 2373132 score 5257 ali 159 qDup 0 type top
+  gap 810727 408 mm10.chr8 - 13917241 476
+   fill 810902 98 mm10.chr8 - 13917376 98 id 6897264 score 2669 ali 98 qOver 98 qFar 0 qDup 0 type syn
+  gap 811167 158 mm10.chr8 - 13917068 141
+ fill 811946 69 mm10.chr8 - 13916225 69 id 6380269 score 2839 ali 69 qDup 0 type top
+ fill 812045 46 mm10.chr8 - 13916155 46 id 7472593 score 2501 ali 46 qDup 0 type top
+ fill 829456 158 mm10.chr4 - 125720624 158 id 1795967 score 6137 ali 158 qDup 0 type top
+ fill 873263 1050 mm10.chr2 - 25222346 1050 id 1174 score 73783 ali 1050 qDup 0 type top
+ fill 874313 35 mm10.chr17 - 57080690 35 id 1982 score 2143 ali 35 qDup 0 type top
+ fill 874522 42 mm10.chr2 - 25222107 42 id 9421682 score 2052 ali 42 qDup 0 type top
+ fill 874564 24 mm10.chr2 - 25222079 24 id 9243237 score 2087 ali 24 qDup 0 type top
+ fill 875123 44 mm10.chr2 - 25221651 44 id 8733675 score 2193 ali 44 qDup 0 type top
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+ fill 1426258 133 mm10.chr4 - 155785332 133 id 983948 score 8402 ali 133 qDup 0 type top
+ fill 1426591 70 mm10.chr4 - 155785046 70 id 4115049 score 3847 ali 70 qDup 0 type top
+ fill 1427124 57 mm10.chr19_KQ030494_fix - 443118 57 id 9608315 score 2016 ali 57 qDup 0 type top
+ fill 1427199 46 mm10.chr19_KQ030494_fix - 443185 46 id 7330144 score 2541 ali 46 qDup 0 type top
+ fill 1427348 81 mm10.chr12_KB469740_fix + 169525 81 id 6924674 score 2661 ali 81 qDup 0 type top
+ fill 1427429 72 mm10.chr12_KB469740_fix + 169611 72 id 7226854 score 2570 ali 72 qDup 0 type top
+ fill 1427543 205 mm10.chr4 - 155784330 205 id 432875 score 12252 ali 205 qDup 0 type top
+ fill 1427748 45 mm10.chr4 - 155784261 45 id 7048710 score 2623 ali 45 qDup 0 type top
+ fill 1430283 43 mm10.chr4 - 155781379 43 id 6918687 score 2662 ali 43 qDup 0 type top
+ fill 1430370 49 mm10.chr4 - 155781299 49 id 8277327 score 2296 ali 49 qDup 0 type top
+ fill 1430426 59 mm10.chr4 - 155781224 59 id 3003795 score 4601 ali 59 qDup 0 type top
+ fill 1430509 38 mm10.chr4 - 155781155 38 id 9062482 score 2123 ali 38 qDup 0 type top
+ fill 1430565 56 mm10.chr4 - 155781099 56 id 5220985 score 3309 ali 56 qDup 0 type top
+ fill 1430621 59 mm10.chr4 - 155781035 59 id 2957566 score 4642 ali 59 qDup 0 type top
+ fill 1433144 126 mm10.chr4 - 155776943 126 id 1140574 score 7803 ali 126 qDup 0 type top
+ fill 1433351 60 mm10.chr4 - 155776806 60 id 7178323 score 2585 ali 60 qDup 0 type top
+ fill 1433650 57 mm10.chr4 - 155776512 57 id 6172241 score 2914 ali 57 qDup 0 type top
+ fill 1433892 90 mm10.chr4 - 155775978 90 id 4349526 score 3726 ali 90 qDup 0 type top
+ fill 1433990 51 mm10.chr4 - 155775927 51 id 4533261 score 3635 ali 51 qDup 0 type top
+ fill 1434377 48 mm10.chr4 - 155775643 48 id 5480912 score 3193 ali 48 qDup 0 type top
+ fill 1434472 45 mm10.chr4 - 155775555 45 id 5824976 score 3048 ali 45 qDup 0 type top
+ fill 1434517 37 mm10.chr4 - 155775517 37 id 8813719 score 2176 ali 37 qDup 0 type top
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+ fill 1434628 59 mm10.chr4 - 155775381 59 id 4834449 score 3489 ali 59 qDup 0 type top
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+ fill 1435727 108 mm10.chr4 - 155774415 108 id 2024067 score 5747 ali 108 qDup 0 type top
+ fill 1436100 86 mm10.chr4 - 155774047 86 id 4169929 score 3818 ali 86 qDup 0 type top
+ fill 1436344 55 mm10.chr4 - 155773821 55 id 6671893 score 2740 ali 55 qDup 0 type top
+ fill 1436910 615 mm10.chr4 - 155772667 615 id 9638 score 41522 ali 615 qDup 0 type top
+ fill 1438092 54 mm10.chr4 - 155772026 54 id 8688607 score 2203 ali 54 qDup 0 type top
+ fill 1438151 93 mm10.chr4 - 155771921 93 id 2461855 score 5149 ali 93 qDup 0 type top
+ fill 1438717 52 mm10.chr4 - 155771352 52 id 7194942 score 2580 ali 52 qDup 0 type top
+ fill 1438960 47 mm10.chr4 - 155771094 47 id 8917683 score 2153 ali 47 qDup 0 type top
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+ fill 1439437 289 mm10.chr4 - 155770379 289 id 153164 score 18197 ali 289 qDup 0 type top
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+ fill 1440680 60 mm10.chr4 - 155769368 60 id 7199149 score 2579 ali 60 qDup 0 type top
+ fill 1440740 64 mm10.chr4 - 155769300 64 id 6057580 score 2957 ali 64 qDup 0 type top
+ fill 1441731 48 mm10.chr4 - 155768369 48 id 9340588 score 2068 ali 48 qDup 0 type top
+ fill 1450691 71 mm10.chr4 - 155757087 71 id 2250543 score 5416 ali 71 qDup 71 type top
+ fill 1451296 39 mm10.chr4 - 155756552 39 id 9411277 score 2054 ali 39 qDup 36 type top
+ fill 1451697 39 mm10.chr4 - 155755121 39 id 9243796 score 2087 ali 39 qDup 0 type top
+ fill 1452062 33 mm10.chr4 - 155754773 33 id 7270117 score 2558 ali 33 qDup 33 type top
+ fill 1452361 75 mm10.chr15_KQ030493_fix + 271425 75 id 1722940 score 6278 ali 75 qDup 0 type top
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+ fill 1454325 187 mm10.chr4 - 155751424 187 id 591565 score 10686 ali 187 qDup 187 type top
+ fill 1455449 83 mm10.chr4 - 155750854 83 id 2927922 score 4669 ali 83 qDup 83 type top
+ fill 1455752 200 mm10.chr4 - 155750436 200 id 733455 score 9682 ali 200 qDup 200 type top
+ fill 1456209 4710 mm10.chr15_KQ030493_fix + 271822 433 id 133196 score 19064 ali 314 qDup 0 type top
+  gap 1456349 4396 mm10.chr15_KQ030493_fix + 271962 119
+   fill 1456526 44 mm10.chr4 - 155749906 44 id 9158773 score 2104 ali 44 qDup 44 type nonSyn
+   fill 1457114 75 mm10.chr4 - 155749147 75 id 2050468 score 5706 ali 75 qDup 75 type nonSyn
+   fill 1459145 93 mm10.chr4 - 155748663 93 id 1991514 score 5799 ali 93 qDup 93 type nonSyn
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+ fill 1462571 165 mm10.chr4 - 155746000 165 id 786038 score 9370 ali 165 qDup 151 type top
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+  gap 1468519 40 mm10.chr15_KQ030493_fix + 272498 30
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+ fill 1477273 96 mm10.chr15_KQ030493_fix + 270952 96 id 357213 score 4752 ali 96 qDup 88 type top
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+ fill 1477967 37 mm10.chr4 - 155756551 37 id 7622392 score 2461 ali 37 qDup 36 type top
+ fill 1478628 130 mm10.chr4 - 155756047 130 id 968211 score 8469 ali 130 qDup 130 type top
+ fill 1479008 111 mm10.chr4 - 155755667 111 id 1685345 score 6353 ali 111 qDup 111 type top
+ fill 1479280 62 mm10.chr4 + 140085600 62 id 4225841 score 3789 ali 62 qDup 0 type top
+ fill 1479364 90 mm10.chr11 - 121184797 90 id 4108318 score 3851 ali 90 qDup 0 type top
+ fill 1479635 42 mm10.chr4_KQ030489_fix - 80103 42 id 9200006 score 2095 ali 42 qDup 0 type top
+ fill 1479719 77 mm10.chr18_KZ289091_fix - 308771 78 id 5554273 score 3161 ali 77 qDup 0 type top
+ fill 1479830 76 mm10.chr4_KQ030489_fix - 79776 76 id 5008996 score 2814 ali 76 qDup 68 type top
+ fill 1479906 138 mm10.chr4_KQ030489_fix - 79713 131 id 3178659 score 4455 ali 131 qDup 68 type top
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+ fill 1481829 243 mm10.chr13 + 95215754 243 id 1533639 score 6685 ali 243 qDup 0 type top
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+ fill 1484996 193 mm10.chr4 - 155751418 193 id 640746 score 10308 ali 193 qDup 193 type top
+ fill 1485768 83 mm10.chr4 - 155750854 83 id 3066446 score 4547 ali 83 qDup 83 type top
+ fill 1486071 200 mm10.chr4 - 155750436 200 id 674503 score 10066 ali 200 qDup 200 type top
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+ fill 1489188 93 mm10.chr4 - 155748663 93 id 2573656 score 5022 ali 93 qDup 93 type top
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+  gap 1495626 200 mm10.chr15_KQ030493_fix + 272504 222
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+  gap 1509340 40 mm10.chr15_KQ030493_fix + 272498 30
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+ fill 1512178 35 mm10.chr15 + 38990150 35 id 9216751 score 2092 ali 35 qDup 0 type top
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+ fill 1533920 132 mm10.chr4 - 155741225 132 id 1316810 score 7246 ali 132 qDup 0 type top
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+ fill 1538153 99 mm10.chr4 - 155737034 99 id 1836018 score 6064 ali 99 qDup 0 type top
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+ fill 1538867 63 mm10.chr4 - 155736274 63 id 4126357 score 3841 ali 63 qDup 0 type top
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+ fill 1574472 139 mm10.chr4 - 155705327 139 id 938332 score 8601 ali 139 qDup 0 type top
+ fill 1583495 88 mm10.chr2 - 152109112 88 id 2092397 score 5642 ali 88 qDup 0 type top
+ fill 1583583 86 mm10.chr2 - 152109025 86 id 2245654 score 5422 ali 86 qDup 0 type top
+ fill 1583677 99 mm10.chr18 - 14308511 99 id 2419405 score 5200 ali 99 qDup 0 type top
+ fill 1583792 40 mm10.chr2 - 152105815 40 id 8511250 score 2242 ali 40 qDup 0 type top
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+ fill 1597719 79 mm10.chr4 - 155696719 79 id 5760948 score 3074 ali 79 qDup 0 type top
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+ fill 1598079 40 mm10.chr4 - 155696385 40 id 8753724 score 2189 ali 40 qDup 0 type top
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+ fill 1598832 75 mm10.chr4 - 155695610 75 id 2189622 score 5500 ali 75 qDup 0 type top
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.ucsc.net	Thu Sep 19 06:23:49 2024 +0000
@@ -0,0 +1,1490 @@
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+ fill 132650 110 mm10.chr7 + 25288222 110 id 1437768 score 6919 ali 110 qDup 110 type top
+ fill 132760 137 mm10.chr7 + 25288333 137 id 1215212 score 7554 ali 137 qDup 137 type top
+ fill 133001 136 mm10.chr7 + 25292648 136 id 963360 score 8490 ali 136 qDup 136 type top
+ fill 133145 53 mm10.chr7 + 25292966 53 id 7261646 score 2560 ali 53 qDup 53 type top
+ fill 133265 58 mm10.chr7 + 25293169 58 id 3668262 score 4107 ali 58 qDup 58 type top
+ fill 133573 66 mm10.chr7 - 25289132 66 id 2171886 score 5525 ali 66 qDup 66 type top
+ fill 133639 56 mm10.chr7 - 25289075 56 id 3307100 score 4355 ali 56 qDup 56 type top
+ fill 133768 66 mm10.chr7 + 25293377 66 id 3626990 score 4133 ali 66 qDup 66 type top
+ fill 134414 86 mm10.chr7 + 25293714 86 id 2754030 score 4835 ali 86 qDup 86 type top
+ fill 134500 64 mm10.chr7 + 25293806 64 id 4826100 score 3493 ali 64 qDup 64 type top
+ fill 134686 150 mm10.chr7 + 25293994 150 id 694140 score 9933 ali 150 qDup 150 type top
+ fill 159724 70 mm10.chr1 + 131467189 70 id 3177811 score 4456 ali 70 qDup 70 type top
+ fill 159866 91 mm10.chr1 + 131467332 91 id 2464694 score 5146 ali 91 qDup 91 type top
+ fill 160013 51 mm10.chr1 + 131467478 51 id 8262798 score 2300 ali 51 qDup 51 type top
+ fill 160194 66 mm10.chr1 + 131467630 66 id 5331600 score 3259 ali 66 qDup 66 type top
+ fill 160369 86 mm10.chr1 + 131467801 86 id 3684095 score 4097 ali 86 qDup 86 type top
+ fill 160595 76 mm10.chr1 + 131468006 76 id 5161833 score 3336 ali 76 qDup 76 type top
+ fill 160677 102 mm10.chr1 + 131468082 102 id 2144657 score 5564 ali 102 qDup 102 type top
+ fill 161075 63 mm10.chr1 + 131468598 63 id 5656390 score 3117 ali 63 qDup 63 type top
+ fill 162717 75 mm10.chr1 + 131470694 75 id 4209960 score 3797 ali 75 qDup 75 type top
+ fill 162876 77 mm10.chr1 + 131471561 77 id 3748450 score 4057 ali 77 qDup 77 type top
+ fill 163022 51 mm10.chr1 + 131471692 51 id 6858229 score 2681 ali 51 qDup 51 type top
+ fill 163214 57 mm10.chr1 + 131471854 57 id 7991496 score 2365 ali 57 qDup 57 type top
+ fill 163286 93 mm10.chr1 + 131471936 93 id 2548259 score 5051 ali 93 qDup 93 type top
+ fill 163565 53 mm10.chr1 + 131472188 53 id 4796505 score 3507 ali 53 qDup 53 type top
+ fill 163694 94 mm10.chr1 + 131472418 94 id 3011603 score 4594 ali 94 qDup 94 type top
+ fill 164277 71 mm10.chr5 + 134263600 71 id 4830248 score 3491 ali 71 qDup 71 type top
+ fill 164687 147 mm10.chr5 + 134263664 147 id 956235 score 8521 ali 147 qDup 147 type top
+ fill 165880 80 mm10.chr5 + 134261839 80 id 2693138 score 4896 ali 80 qDup 80 type top
+ fill 168091 81 mm10.chr5 + 134265728 81 id 2093733 score 5640 ali 81 qDup 81 type top
+ fill 173748 56 mm10.chr5 + 134266538 56 id 3995369 score 3913 ali 56 qDup 56 type top
+ fill 182695 56 mm10.chr17 + 66149262 56 id 4707155 score 3550 ali 56 qDup 56 type top
+ fill 183118 143 mm10.chr17 + 66149954 143 id 1379851 score 7070 ali 143 qDup 143 type top
+ fill 183504 77 mm10.chr17 + 66150342 77 id 4098882 score 3856 ali 77 qDup 77 type top
+ fill 183714 189 mm10.chr17 + 66150548 189 id 759314 score 9525 ali 189 qDup 189 type top
+ fill 184630 87 mm10.chr6 - 121524363 87 id 1466861 score 6846 ali 87 qDup 87 type top
+ fill 185213 110 mm10.chr17 - 66119029 110 id 1464618 score 6852 ali 110 qDup 110 type top
+ fill 185463 103 mm10.chr17 - 66118803 103 id 1733215 score 6257 ali 103 qDup 103 type top
+ fill 185794 65 mm10.chr17 - 66118574 65 id 6623645 score 2756 ali 65 qDup 60 type top
+ fill 186307 170 mm10.chr17 - 66118060 170 id 330846 score 13682 ali 170 qDup 169 type top
+ fill 186706 92 mm10.chr6 - 121522212 92 id 9477098 score 2041 ali 92 qDup 0 type top
+ fill 186833 122 mm10.chr6 - 121522069 122 id 6278026 score 2876 ali 122 qDup 120 type top
+ fill 187122 70 mm10.chr17 - 66117379 70 id 7780035 score 2419 ali 70 qDup 70 type top
+ fill 187361 232 mm10.chr17 - 66116956 232 id 268438 score 14831 ali 232 qDup 232 type top
+ fill 187749 65 mm10.chr17 - 66116701 65 id 2499428 score 5105 ali 65 qDup 65 type top
+ fill 187817 86 mm10.chr17 - 66116615 86 id 2158337 score 5545 ali 86 qDup 86 type top
+ fill 188119 152 mm10.chr17 - 66116254 152 id 455459 score 11988 ali 152 qDup 152 type top
+ fill 188393 92 mm10.chr17 - 66116053 92 id 2990665 score 4613 ali 92 qDup 92 type top
+ fill 188485 115 mm10.chr17 - 66115937 115 id 1062225 score 8086 ali 115 qDup 115 type top
+ fill 188780 138 mm10.chr17 - 66115654 138 id 782229 score 9391 ali 138 qDup 138 type top
+ fill 189015 87 mm10.chr6 - 121520177 87 id 4403472 score 3699 ali 87 qDup 87 type top
+ fill 190214 67 mm10.chr6 - 121518961 67 id 9574525 score 2023 ali 67 qDup 67 type top
+ fill 194834 61 mm10.chr6 - 121511284 61 id 7485617 score 2497 ali 61 qDup 61 type top
+ fill 195247 199 mm10.chr17 - 66113832 199 id 410494 score 12532 ali 199 qDup 199 type top
+ fill 195560 76 mm10.chr6 - 121510575 76 id 5816903 score 3052 ali 76 qDup 69 type top
+ fill 196021 62 mm10.chr6 - 121510227 62 id 3729424 score 4068 ali 62 qDup 62 type top
+ fill 196083 215 mm10.chr6 - 121510011 215 id 171774 score 17472 ali 215 qDup 215 type top
+ fill 196977 118 mm10.chr6 - 121509147 118 id 8194223 score 2316 ali 118 qDup 118 type top
+ fill 206592 89 mm10.chr6 - 121499364 89 id 2993259 score 4610 ali 89 qDup 89 type top
+ fill 206771 107 mm10.chr6 - 121499158 107 id 2424410 score 5194 ali 107 qDup 107 type top
+ fill 206884 59 mm10.chr6 - 121499099 59 id 6195723 score 2906 ali 59 qDup 59 type top
+ fill 206943 71 mm10.chr6 - 121499027 71 id 6256481 score 2884 ali 71 qDup 71 type top
+ fill 207538 107 mm10.chr6 - 121498490 107 id 2739251 score 4849 ali 107 qDup 107 type top
+ fill 258526 55 mm10.chr13 + 120304160 55 id 831217 score 3831 ali 55 qDup 0 type top
+ fill 258581 336 mm10.chr7 + 31470957 336 id 89125 score 21647 ali 336 qDup 0 type top
+ fill 258922 89 mm10.chr6 + 143124950 91 id 126169 score 3676 ali 64 qDup 0 type top
+ fill 269688 75 mm10.chr1 + 176690484 75 id 4369174 score 3716 ali 75 qDup 75 type top
+ fill 269763 169 mm10.chr1 + 176690560 169 id 556783 score 10977 ali 169 qDup 169 type top
+ fill 269933 52 mm10.chr1 + 176690729 52 id 8168781 score 2322 ali 52 qDup 52 type top
+ fill 270068 80 mm10.chr1 + 176691066 80 id 4137190 score 3836 ali 80 qDup 80 type top
+ fill 271702 61 mm10.chr1 + 176692708 61 id 4366393 score 3718 ali 61 qDup 61 type top
+ fill 272023 60 mm10.chr1 + 176693473 60 id 5218901 score 3310 ali 60 qDup 60 type top
+ fill 272669 73 mm10.chr1 + 176694040 73 id 9633532 score 2012 ali 73 qDup 73 type top
+ fill 273366 65 mm10.chr1 + 176694652 65 id 9036017 score 2129 ali 65 qDup 65 type top
+ fill 273500 61 mm10.chr1 + 176694797 61 id 5035657 score 3395 ali 61 qDup 61 type top
+ fill 274756 95 mm10.chr1 + 176695454 95 id 2971522 score 4630 ali 95 qDup 95 type top
+ fill 275212 53 mm10.chr1 + 176695937 53 id 9049346 score 2126 ali 53 qDup 53 type top
+ fill 276020 100 mm10.chr1 + 176696173 100 id 4474604 score 3664 ali 100 qDup 100 type top
+ fill 276188 75 mm10.chr1 + 176696346 75 id 5387932 score 3234 ali 75 qDup 75 type top
+ fill 276408 92 mm10.chr1 + 176696564 92 id 5703548 score 3098 ali 92 qDup 92 type top
+ fill 276659 83 mm10.chr1 + 176696783 83 id 5189445 score 3324 ali 83 qDup 83 type top
+ fill 277035 71 mm10.chr1 + 176697277 71 id 8408876 score 2266 ali 71 qDup 71 type top
+ fill 277277 74 mm10.chr1 + 176697490 74 id 7523655 score 2487 ali 74 qDup 74 type top
+ fill 277520 81 mm10.chr1 + 176697779 81 id 4075518 score 3869 ali 81 qDup 81 type top
+ fill 278802 93 mm10.chr1 + 176698286 93 id 7770740 score 2421 ali 93 qDup 93 type top
+ fill 279009 131 mm10.chr1 + 176698484 131 id 1830718 score 6073 ali 131 qDup 131 type top
+ fill 279216 81 mm10.chr1 + 176698725 81 id 7367796 score 2530 ali 81 qDup 81 type top
+ fill 279300 117 mm10.chr1 + 176698806 117 id 1447772 score 6894 ali 117 qDup 117 type top
+ fill 283276 168 mm10.chr8 - 65740243 168 id 666215 score 10125 ali 168 qDup 168 type top
+ fill 283498 83 mm10.chr8 - 65740111 83 id 6704346 score 2730 ali 83 qDup 83 type top
+ fill 283601 60 mm10.chr8 - 65740031 60 id 5602859 score 3140 ali 60 qDup 60 type top
+ fill 283665 50 mm10.chr8 - 65739981 50 id 9426683 score 2051 ali 50 qDup 50 type top
+ fill 283862 82 mm10.chr8 - 65739776 82 id 6456525 score 2813 ali 82 qDup 82 type top
+ fill 295620 64 mm10.chr8 - 65730063 64 id 6743472 score 2717 ali 64 qDup 64 type top
+ fill 295757 51 mm10.chr8 - 65729948 51 id 8839776 score 2170 ali 51 qDup 51 type top
+ fill 296745 77 mm10.chr8 - 65729215 77 id 4658298 score 3574 ali 77 qDup 77 type top
+ fill 347984 188 mm10.chrX + 48889895 188 id 359381 score 13236 ali 188 qDup 0 type top
+ fill 348172 152 mm10.chr13 + 120304405 152 id 439089 score 11016 ali 152 qDup 0 type top
+ fill 359349 92 mm10.chr11 - 121814790 92 id 2983853 score 4619 ali 92 qDup 92 type top
+ fill 360143 71 mm10.chr11 - 121814181 71 id 3079078 score 4537 ali 71 qDup 41 type top
+ fill 363832 77 mm10.chr11 - 121811489 77 id 4124442 score 3842 ali 77 qDup 77 type top
+ fill 367891 72 mm10.chr17 + 9651192 72 id 4561451 score 3621 ali 72 qDup 71 type top
+ fill 378318 131 mm10.chr8 - 114664379 131 id 3526817 score 4199 ali 131 qDup 131 type top
+ fill 383937 68 mm10.chr1 + 176674067 68 id 8232417 score 2307 ali 68 qDup 68 type top
+ fill 384007 168 mm10.chr1 + 176674135 168 id 956826 score 8519 ali 168 qDup 168 type top
+ fill 384177 62 mm10.chr1 + 176674303 62 id 9072477 score 2121 ali 62 qDup 62 type top
+ fill 384240 64 mm10.chr1 + 176674365 64 id 9614104 score 2015 ali 64 qDup 64 type top
+ fill 385442 56 mm10.chr1 + 176675280 56 id 8236792 score 2306 ali 56 qDup 56 type top
+ fill 385650 62 mm10.chr1 + 176675447 62 id 7642501 score 2455 ali 62 qDup 62 type top
+ fill 385714 144 mm10.chr1 + 176675509 144 id 1197553 score 7611 ali 144 qDup 144 type top
+ fill 389928 83 mm10.chr1 + 176677555 83 id 2703349 score 4885 ali 83 qDup 83 type top
+ fill 390024 108 mm10.chr1 + 176677653 108 id 2847551 score 4743 ali 108 qDup 108 type top
+ fill 390180 90 mm10.chr1 + 176677805 90 id 4200888 score 3802 ali 90 qDup 90 type top
+ fill 397289 72 mm10.chr1 + 176687150 72 id 6332570 score 2856 ali 72 qDup 0 type top
+ fill 397534 74 mm10.chr1 + 176687330 74 id 4187541 score 3809 ali 74 qDup 0 type top
+ fill 397928 70 mm10.chr1 + 176687680 70 id 8611343 score 2220 ali 70 qDup 0 type top
+ fill 398084 102 mm10.chr1 + 176687806 102 id 3592741 score 4155 ali 102 qDup 0 type top
+ fill 405554 65 mm10.chr1 + 176692704 65 id 4559997 score 3622 ali 65 qDup 65 type top
+ fill 405880 60 mm10.chr1 + 176693473 60 id 5802701 score 3057 ali 60 qDup 60 type top
+ fill 406480 52 mm10.chr1 + 176693999 52 id 9028807 score 2130 ali 52 qDup 52 type top
+ fill 407218 68 mm10.chr1 + 176694649 68 id 8346142 score 2280 ali 68 qDup 68 type top
+ fill 407286 69 mm10.chr1 + 176694721 69 id 9649174 score 2009 ali 69 qDup 69 type top
+ fill 407355 61 mm10.chr1 + 176694797 61 id 5054855 score 3386 ali 61 qDup 61 type top
+ fill 408609 95 mm10.chr1 + 176695454 95 id 2971525 score 4630 ali 95 qDup 95 type top
+ fill 409065 55 mm10.chr1 + 176695937 55 id 9161274 score 2103 ali 55 qDup 55 type top
+ fill 409856 100 mm10.chr1 + 176696173 100 id 4232688 score 3786 ali 100 qDup 100 type top
+ fill 410024 75 mm10.chr1 + 176696346 75 id 5387934 score 3234 ali 75 qDup 75 type top
+ fill 410244 92 mm10.chr1 + 176696564 92 id 5935365 score 3004 ali 92 qDup 92 type top
+ fill 410495 83 mm10.chr1 + 176696783 83 id 4709833 score 3549 ali 83 qDup 83 type top
+ fill 410872 71 mm10.chr1 + 176697277 71 id 8408875 score 2266 ali 71 qDup 71 type top
+ fill 411114 74 mm10.chr1 + 176697490 74 id 7065691 score 2618 ali 74 qDup 74 type top
+ fill 411357 81 mm10.chr1 + 176697779 81 id 4325525 score 3738 ali 81 qDup 81 type top
+ fill 412645 81 mm10.chr1 + 176698286 81 id 8994774 score 2137 ali 81 qDup 81 type top
+ fill 412728 59 mm10.chr1 + 176698367 59 id 7539106 score 2483 ali 59 qDup 59 type top
+ fill 412852 131 mm10.chr1 + 176698484 131 id 1707721 score 6308 ali 131 qDup 131 type top
+ fill 413123 78 mm10.chr1 + 176698728 78 id 7047121 score 2623 ali 78 qDup 78 type top
+ fill 413204 117 mm10.chr1 + 176698806 117 id 1396713 score 7025 ali 117 qDup 117 type top
+ fill 421429 55 mm10.chr2 + 111789830 55 id 5768593 score 3071 ali 55 qDup 55 type top
+ fill 421601 137 mm10.chr2 + 111790007 137 id 1431701 score 6934 ali 137 qDup 137 type top
+ fill 421780 84 mm10.chr2 + 111727065 84 id 4195471 score 3805 ali 84 qDup 84 type top
+ fill 422054 74 mm10.chr2 + 111727232 74 id 8168469 score 2322 ali 74 qDup 74 type top
+ fill 422195 71 mm10.chr2 + 111790463 71 id 5196359 score 3321 ali 71 qDup 71 type top
+ fill 422336 65 mm10.chr2 + 111727523 65 id 8283641 score 2295 ali 65 qDup 65 type top
+ fill 423197 59 mm10.chr2 + 111791341 59 id 8549708 score 2234 ali 59 qDup 59 type top
+ fill 439866 90 mm10.chr19 + 46599213 90 id 1784342 score 6159 ali 90 qDup 89 type top
+ fill 439997 55 mm10.chr19 + 46644400 55 id 3137570 score 4408 ali 55 qDup 55 type top
+ fill 440052 69 mm10.chr19 + 46652473 69 id 2212744 score 5468 ali 69 qDup 69 type top
+ fill 440121 87 mm10.chr19 + 46652548 87 id 2122293 score 5597 ali 87 qDup 87 type top
+ fill 440208 62 mm10.chr19 + 46653972 62 id 3436036 score 3944 ali 62 qDup 62 type top
+ fill 440352 82 mm10.chrX + 8903721 82 id 2038270 score 5725 ali 82 qDup 82 type top
+ fill 440524 72 mm10.chr19 + 46656567 72 id 4294786 score 3754 ali 72 qDup 72 type top
+ fill 440691 64 mm10.chrX + 8903976 64 id 4927198 score 3446 ali 64 qDup 64 type top
+ fill 447353 50 mm10.chrX + 8904183 50 id 6188841 score 2908 ali 50 qDup 50 type top
+ fill 447658 54 mm10.chrX + 8904420 54 id 6230375 score 2893 ali 54 qDup 54 type top
+ fill 447904 83 mm10.chr6 + 75183490 83 id 2280923 score 5375 ali 83 qDup 83 type top
+ fill 450728 1002 mm10.chr2 + 111813774 1002 id 1713 score 67341 ali 1002 qDup 1002 type top
+ fill 475061 64 mm10.chr8 - 65730063 64 id 6743533 score 2717 ali 64 qDup 64 type top
+ fill 475198 51 mm10.chr8 - 65729948 51 id 8839775 score 2170 ali 51 qDup 51 type top
+ fill 476186 77 mm10.chr8 - 65729215 77 id 4408941 score 3696 ali 77 qDup 77 type top
+ fill 478038 132 mm10.chr8 - 65727694 132 id 1485928 score 6799 ali 132 qDup 132 type top
+ fill 478215 61 mm10.chr8 - 65727596 61 id 7297826 score 2550 ali 61 qDup 61 type top
+ fill 479853 69 mm10.chr8 - 65723468 69 id 6642132 score 2750 ali 69 qDup 69 type top
+ fill 479950 95 mm10.chr8 - 65723359 95 id 8839779 score 2170 ali 95 qDup 95 type top
+ fill 480931 55 mm10.chr8 - 65722796 55 id 4612652 score 3596 ali 55 qDup 55 type top
+ fill 483370 77 mm10.chr5 + 129676301 77 id 4222489 score 3791 ali 77 qDup 77 type top
+ fill 483497 71 mm10.chr5 + 129676422 71 id 7905096 score 2387 ali 71 qDup 71 type top
+ fill 485027 189 mm10.chr5 + 129683488 189 id 484627 score 11671 ali 189 qDup 189 type top
+ fill 487150 51 mm10.chr7 + 25284847 51 id 5648917 score 3121 ali 51 qDup 51 type top
+ fill 487213 69 mm10.chr7 + 25284929 69 id 2850278 score 4741 ali 69 qDup 69 type top
+ fill 487282 172 mm10.chr7 + 25285078 172 id 563761 score 10916 ali 172 qDup 172 type top
+ fill 487454 62 mm10.chr7 + 25285251 62 id 3317382 score 4348 ali 62 qDup 62 type top
+ fill 487516 130 mm10.chr7 + 25285409 130 id 965658 score 8480 ali 130 qDup 130 type top
+ fill 487720 95 mm10.chr7 + 25285701 95 id 1447569 score 6895 ali 95 qDup 95 type top
+ fill 487848 67 mm10.chr7 + 25285939 67 id 2422993 score 5196 ali 67 qDup 67 type top
+ fill 487916 56 mm10.chr7 + 25286006 56 id 4224688 score 3724 ali 56 qDup 56 type top
+ fill 487972 58 mm10.chr7 + 25286805 58 id 3577110 score 4165 ali 58 qDup 58 type top
+ fill 488030 61 mm10.chr7 + 25286871 61 id 3368077 score 4310 ali 61 qDup 61 type top
+ fill 488091 72 mm10.chr7 + 25286933 72 id 2687984 score 4901 ali 72 qDup 72 type top
+ fill 488163 95 mm10.chr7 + 25287096 95 id 1622254 score 6487 ali 95 qDup 95 type top
+ fill 488272 88 mm10.chr7 + 25287214 88 id 3092546 score 4525 ali 88 qDup 88 type top
+ fill 488382 60 mm10.chr7 + 25287748 60 id 3248257 score 4400 ali 60 qDup 60 type top
+ fill 488534 62 mm10.chr7 + 25288123 62 id 3829476 score 4008 ali 62 qDup 62 type top
+ fill 488632 115 mm10.chr7 + 25288217 115 id 1469325 score 6840 ali 115 qDup 110 type top
+ fill 488747 137 mm10.chr7 + 25288333 137 id 1215215 score 7554 ali 137 qDup 137 type top
+ fill 488988 136 mm10.chr7 + 25292648 136 id 1023686 score 8237 ali 136 qDup 136 type top
+ fill 489132 53 mm10.chr7 + 25292966 53 id 6827463 score 2691 ali 53 qDup 53 type top
+ fill 489252 58 mm10.chr7 + 25293169 58 id 3668267 score 4107 ali 58 qDup 58 type top
+ fill 489560 66 mm10.chr7 - 25289132 66 id 2172040 score 5525 ali 66 qDup 66 type top
+ fill 489626 56 mm10.chr7 - 25289075 56 id 3489510 score 4224 ali 56 qDup 56 type top
+ fill 489755 66 mm10.chr7 + 25293377 66 id 3627151 score 4133 ali 66 qDup 66 type top
+ fill 489919 50 mm10.chr18 - 70907345 50 id 5977150 score 2988 ali 50 qDup 45 type top
+ fill 490397 86 mm10.chr7 + 25293714 86 id 2754032 score 4835 ali 86 qDup 86 type top
+ fill 490483 64 mm10.chr7 + 25293806 64 id 4825896 score 3493 ali 64 qDup 64 type top
+ fill 490669 150 mm10.chr7 + 25293994 150 id 694137 score 9933 ali 150 qDup 150 type top
+ fill 497301 80 mm10.chrX - 10697218 80 id 7534955 score 2484 ali 80 qDup 80 type top
+ fill 497407 60 mm10.chr6 - 127282269 60 id 5572794 score 3153 ali 60 qDup 60 type top
+ fill 497517 85 mm10.chr6 - 127282140 85 id 2687000 score 4902 ali 85 qDup 85 type top
+ fill 497654 106 mm10.chr17 - 87433949 106 id 2221211 score 5456 ali 106 qDup 106 type top
+ fill 518320 70 mm10.chr1 + 131467189 70 id 3177812 score 4456 ali 70 qDup 70 type top
+ fill 518462 91 mm10.chr1 + 131467332 91 id 2464691 score 5146 ali 91 qDup 91 type top
+ fill 518609 51 mm10.chr1 + 131467478 51 id 8262801 score 2300 ali 51 qDup 51 type top
+ fill 518790 66 mm10.chr1 + 131467630 66 id 5045771 score 3390 ali 66 qDup 66 type top
+ fill 518965 86 mm10.chr1 + 131467801 86 id 3684099 score 4097 ali 86 qDup 86 type top
+ fill 519191 76 mm10.chr1 + 131468006 76 id 5161831 score 3336 ali 76 qDup 76 type top
+ fill 519273 102 mm10.chr1 + 131468082 102 id 2144659 score 5564 ali 102 qDup 102 type top
+ fill 519671 63 mm10.chr1 + 131468598 63 id 5656393 score 3117 ali 63 qDup 63 type top
+ fill 521313 75 mm10.chr1 + 131470694 75 id 4209955 score 3797 ali 75 qDup 75 type top
+ fill 521472 77 mm10.chr1 + 131471561 77 id 3748443 score 4057 ali 77 qDup 77 type top
+ fill 521618 51 mm10.chr1 + 131471692 51 id 6858239 score 2681 ali 51 qDup 51 type top
+ fill 521810 57 mm10.chr1 + 131471854 57 id 7991497 score 2365 ali 57 qDup 57 type top
+ fill 521882 93 mm10.chr1 + 131471936 93 id 2548260 score 5051 ali 93 qDup 93 type top
+ fill 522161 53 mm10.chr1 + 131472188 53 id 4796508 score 3507 ali 53 qDup 53 type top
+ fill 522290 94 mm10.chr1 + 131472418 94 id 3011594 score 4594 ali 94 qDup 94 type top
+ fill 522873 71 mm10.chr5 + 134263600 71 id 4830247 score 3491 ali 71 qDup 71 type top
+ fill 523283 147 mm10.chr5 + 134263664 147 id 956234 score 8521 ali 147 qDup 147 type top
+ fill 524476 80 mm10.chr5 + 134261839 80 id 2693139 score 4896 ali 80 qDup 80 type top
+ fill 526687 81 mm10.chr5 + 134265728 81 id 2243135 score 5426 ali 81 qDup 81 type top
+ fill 532343 56 mm10.chr5 + 134266538 56 id 3995374 score 3913 ali 56 qDup 56 type top
+ fill 588121 92 mm10.chr11 - 121814790 92 id 2983851 score 4619 ali 92 qDup 92 type top
+ fill 592896 77 mm10.chr11 - 121811489 77 id 4124440 score 3842 ali 77 qDup 77 type top
+ fill 596944 71 mm10.chr17 + 9651192 71 id 4749410 score 3530 ali 71 qDup 71 type top
+ fill 606509 131 mm10.chr8 - 114664379 131 id 3526779 score 4199 ali 131 qDup 131 type top
+ fill 613827 68 mm10.chr1 + 176674067 68 id 8232425 score 2307 ali 68 qDup 68 type top
+ fill 613897 168 mm10.chr1 + 176674135 168 id 929802 score 8641 ali 168 qDup 168 type top
+ fill 614067 62 mm10.chr1 + 176674303 62 id 9072510 score 2121 ali 62 qDup 62 type top
+ fill 614130 64 mm10.chr1 + 176674365 64 id 8994808 score 2137 ali 64 qDup 64 type top
+ fill 615332 56 mm10.chr1 + 176675280 56 id 8236830 score 2306 ali 56 qDup 56 type top
+ fill 615540 62 mm10.chr1 + 176675447 62 id 7642507 score 2455 ali 62 qDup 62 type top
+ fill 615604 144 mm10.chr1 + 176675509 144 id 1197514 score 7611 ali 144 qDup 144 type top
+ fill 619818 83 mm10.chr1 + 176677555 83 id 2615542 score 4977 ali 83 qDup 83 type top
+ fill 619914 108 mm10.chr1 + 176677653 108 id 2847553 score 4743 ali 108 qDup 108 type top
+ fill 620070 90 mm10.chr1 + 176677805 90 id 4200885 score 3802 ali 90 qDup 90 type top
+ fill 629080 352 mm10.chrM + 3354 352 id 247130 score 15305 ali 352 qDup 0 type top
+ fill 629433 122 mm10.chrM + 3706 122 id 892749 score 8814 ali 122 qDup 0 type top
+ fill 629571 51 mm10.chrM + 3844 51 id 3108563 score 4512 ali 51 qDup 0 type top
+ fill 629622 271 mm10.chrM + 3896 271 id 704730 score 9863 ali 271 qDup 0 type top
+ fill 629928 83 mm10.chrM + 4202 83 id 3771437 score 4043 ali 83 qDup 0 type top
+ fill 630027 277 mm10.chrM + 4301 277 id 767403 score 9476 ali 277 qDup 0 type top
+ fill 630339 323 mm10.chr2 - 22590038 323 id 718381 score 9776 ali 323 qDup 0 type top
+ fill 630697 53 mm10.chr9 - 123107433 53 id 7787759 score 2417 ali 53 qDup 0 type top
+ fill 630752 88 mm10.chr6 - 120475983 88 id 2993254 score 4610 ali 88 qDup 0 type top
+ fill 630884 59 mm10.chr2 - 22589771 59 id 4911529 score 3453 ali 59 qDup 0 type top
+ fill 630943 52 mm10.chrM + 5204 52 id 5328606 score 2323 ali 52 qDup 0 type top
+ fill 631073 786 mm10.chr2 - 22588861 786 id 7377 score 45138 ali 786 qDup 0 type top
+ fill 631862 847 mm10.chrM + 6115 847 id 5757 score 48913 ali 847 qDup 0 type top
+ fill 632756 611 mm10.chr1 - 24614954 611 id 35443 score 28725 ali 611 qDup 0 type top
+ fill 633479 1444 mm10.chrM + 7713 1441 id 2696 score 60950 ali 1268 qDup 0 type top
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+ fill 639285 169 mm10.chr1 + 176690560 169 id 557814 score 10968 ali 169 qDup 169 type top
+ fill 639455 52 mm10.chr1 + 176690729 52 id 8486474 score 2248 ali 52 qDup 52 type top
+ fill 639590 80 mm10.chr1 + 176691066 80 id 4137187 score 3836 ali 80 qDup 80 type top
+ fill 641304 65 mm10.chr1 + 176692704 65 id 4560005 score 3622 ali 65 qDup 65 type top
+ fill 641630 60 mm10.chr1 + 176693473 60 id 5492399 score 3188 ali 60 qDup 60 type top
+ fill 642230 52 mm10.chr1 + 176693999 52 id 9028811 score 2130 ali 52 qDup 52 type top
+ fill 642968 68 mm10.chr1 + 176694649 68 id 8346147 score 2280 ali 68 qDup 68 type top
+ fill 643036 69 mm10.chr1 + 176694721 69 id 9649146 score 2009 ali 69 qDup 69 type top
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+ fill 648959 117 mm10.chr1 + 176698806 117 id 1396714 score 7025 ali 117 qDup 117 type top
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+ fill 657521 84 mm10.chr2 + 111727065 84 id 4195460 score 3805 ali 84 qDup 84 type top
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+ fill 674973 55 mm10.chr19 + 46644400 55 id 3137558 score 4408 ali 55 qDup 55 type top
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+ fill 675097 87 mm10.chr19 + 46652548 87 id 2122291 score 5597 ali 87 qDup 87 type top
+ fill 675184 62 mm10.chr19 + 46653972 62 id 3436033 score 3944 ali 62 qDup 62 type top
+ fill 675328 82 mm10.chrX + 8903721 82 id 2038269 score 5725 ali 82 qDup 82 type top
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+ fill 735615 80 mm10.chrX - 10697218 80 id 7534953 score 2484 ali 80 qDup 80 type top
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+ fill 735831 85 mm10.chr6 - 127282140 85 id 2687001 score 4902 ali 85 qDup 85 type top
+ fill 735968 106 mm10.chr17 - 87433949 106 id 2221212 score 5456 ali 106 qDup 106 type top
+ fill 736137 52 mm10.chr17 - 87433831 52 id 6859495 score 2681 ali 52 qDup 52 type top
+ fill 739054 57 mm10.chrX - 10697218 57 id 7074629 score 2615 ali 57 qDup 57 type top
+ fill 739137 60 mm10.chr6 - 127282269 60 id 5868477 score 3031 ali 60 qDup 60 type top
+ fill 739247 85 mm10.chr6 - 127282140 85 id 2686997 score 4902 ali 85 qDup 85 type top
+ fill 739384 106 mm10.chr17 - 87433949 106 id 2135031 score 5578 ali 106 qDup 106 type top
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+ fill 778916 81 mm10.chr5 + 129908724 81 id 3059313 score 4553 ali 81 qDup 0 type top
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+   fill 810131 50 mm10.chr8 - 13920936 50 id 4502725 score 3650 ali 50 qOver 50 qFar 0 qDup 0 type syn
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+ fill 1471907 191 mm10.chr4 - 155760792 191 id 270843 score 14779 ali 191 qDup 191 type top
+ fill 1477273 96 mm10.chr15_KQ030493_fix + 270952 96 id 357213 score 4752 ali 96 qDup 88 type top
+ fill 1478628 130 mm10.chr4 - 155756047 130 id 968211 score 8469 ali 130 qDup 130 type top
+ fill 1479008 111 mm10.chr4 - 155755667 111 id 1685345 score 6353 ali 111 qDup 111 type top
+ fill 1479280 62 mm10.chr4 + 140085600 62 id 4225841 score 3789 ali 62 qDup 0 type top
+ fill 1479364 90 mm10.chr11 - 121184797 90 id 4108318 score 3851 ali 90 qDup 0 type top
+ fill 1479719 77 mm10.chr18_KZ289091_fix - 308771 78 id 5554273 score 3161 ali 77 qDup 0 type top
+ fill 1479830 76 mm10.chr4_KQ030489_fix - 79776 76 id 5008996 score 2814 ali 76 qDup 68 type top
+ fill 1479906 138 mm10.chr4_KQ030489_fix - 79713 131 id 3178659 score 4455 ali 131 qDup 68 type top
+ fill 1480044 73 mm10.chr5 + 134527642 211 id 7064447 score 2303 ali 73 qDup 0 type top
+ fill 1480863 83 mm10.chr4 - 155754746 83 id 1719515 score 6284 ali 83 qDup 83 type top
+ fill 1481829 243 mm10.chr13 + 95215754 243 id 1533639 score 6685 ali 243 qDup 0 type top
+ fill 1482131 191 mm10.chr4 - 155753862 191 id 430088 score 12285 ali 191 qDup 179 type top
+ fill 1482541 75 mm10.chr15 + 38990908 75 id 1662609 score 6400 ali 75 qDup 0 type top
+ fill 1484996 193 mm10.chr4 - 155751418 193 id 640746 score 10308 ali 193 qDup 193 type top
+ fill 1485768 83 mm10.chr4 - 155750854 83 id 3066446 score 4547 ali 83 qDup 83 type top
+ fill 1486071 200 mm10.chr4 - 155750436 200 id 674503 score 10066 ali 200 qDup 200 type top
+ fill 1486529 144 mm10.chr4 - 155750126 144 id 568726 score 10875 ali 144 qDup 144 type top
+ fill 1487849 74 mm10.chr4 - 155749147 74 id 1984316 score 5811 ali 74 qDup 74 type top
+ fill 1489188 93 mm10.chr4 - 155748663 93 id 2573656 score 5022 ali 93 qDup 93 type top
+ fill 1490250 201 mm10.chr4 - 155747286 201 id 313596 score 13974 ali 201 qDup 190 type top
+ fill 1490538 147 mm10.chr4 - 155746014 147 id 673217 score 10076 ali 147 qDup 147 type top
+ fill 1495482 389 mm10.chr15_KQ030493_fix + 272360 411 id 1043786 score 8157 ali 189 qDup 167 type top
+ fill 1496261 66 mm10.chr4 - 155740535 66 id 3222552 score 4420 ali 66 qDup 61 type top
+ fill 1503592 5817 mm10.chr15_KQ030493_fix + 270960 1597 id 640703 score 10308 ali 255 qDup 255 type top
+  gap 1503680 5522 mm10.chr15_KQ030493_fix + 271048 1312
+ fill 1509512 56 mm10.chr4 - 155740547 56 id 3846377 score 3998 ali 56 qDup 56 type top
+ fill 1512291 191 mm10.chr4 - 155760792 191 id 261056 score 14993 ali 191 qDup 191 type top
+ fill 1516005 88 mm10.chr4 - 155757086 88 id 1436530 score 6922 ali 88 qDup 71 type top
+ fill 1516599 60 mm10.chr4 - 155756702 60 id 8581247 score 2227 ali 60 qDup 0 type top
+ fill 1517295 130 mm10.chr4 - 155756047 130 id 968212 score 8469 ali 130 qDup 130 type top
+ fill 1517675 111 mm10.chr4 - 155755667 111 id 1685267 score 6353 ali 111 qDup 111 type top
+ fill 1518917 83 mm10.chr4 - 155754746 83 id 1719564 score 6284 ali 83 qDup 83 type top
+ fill 1519882 193 mm10.chr5 + 127083698 193 id 1866745 score 6009 ali 193 qDup 0 type top
+ fill 1520134 179 mm10.chr4 - 155753874 179 id 410374 score 12533 ali 179 qDup 179 type top
+ fill 1520522 114 mm10.chr4 - 155753547 114 id 1563179 score 6617 ali 114 qDup 0 type top
+ fill 1522724 193 mm10.chr4 - 155751418 193 id 630731 score 10382 ali 193 qDup 193 type top
+ fill 1523507 79 mm10.chr15_KQ030493_fix + 271651 79 id 270787 score 4615 ali 79 qDup 0 type top
+ fill 1523810 190 mm10.chr4 - 155750436 190 id 597812 score 10636 ali 190 qDup 190 type top
+ fill 1524258 144 mm10.chr4 - 155750126 144 id 553546 score 11006 ali 144 qDup 144 type top
+ fill 1525224 76 mm10.chr4 - 155749147 76 id 2071207 score 5675 ali 76 qDup 75 type top
+ fill 1526445 93 mm10.chr4 - 155748663 93 id 1991520 score 5799 ali 93 qDup 93 type top
+ fill 1527690 190 mm10.chr4 - 155747295 190 id 256126 score 15100 ali 190 qDup 190 type top
+ fill 1528658 61 mm10.chr4 - 155746768 61 id 8608995 score 2220 ali 61 qDup 61 type top
+ fill 1529194 151 mm10.chr4 - 155746014 151 id 646995 score 10262 ali 151 qDup 151 type top
+ fill 1533920 132 mm10.chr4 - 155741225 132 id 1316810 score 7246 ali 132 qDup 0 type top
+ fill 1534742 63 mm10.chr4 - 155740540 63 id 2863836 score 4728 ali 63 qDup 63 type top
+ fill 1535226 56 mm10.chr4 - 155740047 56 id 5839076 score 3043 ali 56 qDup 0 type top
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+ fill 1538001 72 mm10.chr4 - 155737207 72 id 7588952 score 2470 ali 72 qDup 0 type top
+ fill 1538153 99 mm10.chr4 - 155737034 99 id 1836018 score 6064 ali 99 qDup 0 type top
+ fill 1538867 63 mm10.chr4 - 155736274 63 id 4126357 score 3841 ali 63 qDup 0 type top
+ fill 1539012 94 mm10.chr4 - 155736103 94 id 1146515 score 7782 ali 94 qDup 0 type top
+ fill 1539382 52 mm10.chr4 - 155735796 52 id 7060270 score 2620 ali 52 qDup 0 type top
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+ fill 1540252 144 mm10.chr4 - 155735039 144 id 337825 score 13570 ali 144 qDup 0 type top
+ fill 1540396 51 mm10.chr4 - 155734987 51 id 3028537 score 4580 ali 51 qDup 0 type top
+ fill 1540754 65 mm10.chr4 - 155734619 65 id 5981714 score 2986 ali 65 qDup 0 type top
+ fill 1542062 105 mm10.chr14 + 123985267 98 id 466037 score 5148 ali 85 qDup 0 type top
+ fill 1543862 133 mm10.chr4 - 155731918 133 id 560471 score 10945 ali 133 qDup 0 type top
+ fill 1544857 188 mm10.chr4 - 155731281 188 id 405192 score 12601 ali 188 qDup 0 type top
+ fill 1564764 162 mm10.chr4 - 155715451 162 id 357367 score 13266 ali 162 qDup 0 type top
+ fill 1570460 84 mm10.chr7 + 98761728 84 id 1558664 score 6627 ali 84 qDup 0 type top
+ fill 1574472 139 mm10.chr4 - 155705327 139 id 938332 score 8601 ali 139 qDup 0 type top
+ fill 1583495 88 mm10.chr2 - 152109112 88 id 2092397 score 5642 ali 88 qDup 0 type top
+ fill 1583583 86 mm10.chr2 - 152109025 86 id 2245654 score 5422 ali 86 qDup 0 type top
+ fill 1583677 99 mm10.chr18 - 14308511 99 id 2419405 score 5200 ali 99 qDup 0 type top
+ fill 1597719 79 mm10.chr4 - 155696719 79 id 5760948 score 3074 ali 79 qDup 0 type top
+ fill 1598452 66 mm10.chr4 - 155696031 66 id 6933573 score 2658 ali 66 qDup 0 type top
+ fill 1598749 61 mm10.chr4 - 155695710 61 id 6068410 score 2953 ali 61 qDup 0 type top
+ fill 1598832 75 mm10.chr4 - 155695610 75 id 2189622 score 5500 ali 75 qDup 0 type top
+ fill 1598946 59 mm10.chr4 - 155695508 59 id 6646759 score 2749 ali 59 qDup 0 type top
+ fill 1599005 157 mm10.chr4 - 155695348 157 id 1191303 score 7631 ali 157 qDup 0 type top
+ fill 1599297 223 mm10.chr4 - 155694986 223 id 178232 score 17244 ali 223 qDup 0 type top
+ fill 1599529 499 mm10.chr4 - 155694487 499 id 15205 score 36525 ali 499 qDup 0 type top
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+ fill 1617527 71 mm10.chr4 - 155667133 71 id 3841480 score 4000 ali 71 qDup 0 type top
+ fill 1617613 109 mm10.chr4 - 155667006 109 id 1652873 score 6421 ali 109 qDup 0 type top
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+ fill 1624437 59 mm10.chr4 - 155660048 59 id 6738065 score 2719 ali 59 qDup 0 type top
+ fill 1624785 128 mm10.chr4 - 155659665 128 id 726673 score 9724 ali 128 qDup 0 type top
+ fill 1624976 220 mm10.chr4 - 155659376 220 id 198278 score 16606 ali 220 qDup 0 type top
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+ fill 1632974 156 mm10.chr4 - 155652211 156 id 793906 score 9325 ali 156 qDup 156 type top
+ fill 1633178 183 mm10.chr4 - 155651978 183 id 340204 score 13531 ali 183 qDup 176 type top
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+ fill 1634191 147 mm10.chr4 - 155650996 147 id 735903 score 9666 ali 147 qDup 143 type top
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+ fill 1637071 173 mm10.chr4 - 155648240 173 id 616893 score 10487 ali 173 qDup 164 type top
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+ fill 1640262 218 mm10.chr4 - 155641486 218 id 309439 score 14047 ali 218 qDup 218 type top
+ fill 1641029 147 mm10.chr4 - 155640683 147 id 1130915 score 7836 ali 147 qDup 147 type top
+ fill 1641705 55 mm10.chr4 - 155639839 55 id 3114066 score 4507 ali 55 qDup 55 type top
+ fill 1641760 69 mm10.chr4 - 155639767 69 id 2600839 score 4993 ali 69 qDup 69 type top
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+ fill 1642369 142 mm10.chr4 - 155638516 142 id 928515 score 8647 ali 142 qDup 142 type top
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+ fill 1645117 147 mm10.chr4 - 155634086 147 id 517034 score 11343 ali 147 qDup 147 type top
+ fill 1649494 155 mm10.chr4 - 155630181 155 id 473967 score 11785 ali 155 qDup 149 type top
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+ fill 1655949 67 mm10.chr4 - 155626181 67 id 4588386 score 3608 ali 67 qDup 0 type top
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+ fill 1665768 262 mm10.chr4 - 155618500 262 id 302318 score 14176 ali 262 qDup 0 type top
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+ fill 1669650 92 mm10.chr4 - 155616176 92 id 1858535 score 6023 ali 92 qDup 0 type top
+ fill 1670075 93 mm10.chr4 - 155615551 93 id 1663048 score 6399 ali 93 qDup 0 type top
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+ fill 1671474 164 mm10.chr4 - 155612607 164 id 640315 score 10311 ali 164 qDup 0 type top
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+ fill 1674037 60 mm10.chr9 - 4229071 60 id 620671 score 3169 ali 60 qDup 0 type top
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