Mercurial > repos > iuc > ucsc_wigtobigwig
changeset 1:98704d357ede draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/wigtobigwig commit 303002db06287fb25306020c4391626842f52162
| author | iuc |
|---|---|
| date | Sun, 22 Sep 2024 07:27:34 +0000 |
| parents | a2f83a375bf2 |
| children | fa49730d1d4b |
| files | wigtobigwig.xml |
| diffstat | 1 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/wigtobigwig.xml Thu Jan 18 19:45:00 2024 +0000 +++ b/wigtobigwig.xml Sun Sep 22 07:27:34 2024 +0000 @@ -1,7 +1,7 @@ <tool id="ucsc_wigtobigwig" name="wigtobigwig" version="@TOOL_VERSION@+galaxy0" profile="22.05"> <description>bedGraph or Wig to bigWig converter</description> <macros> - <token name="@TOOL_VERSION@">447</token> + <token name="@TOOL_VERSION@">469</token> </macros> <xrefs> <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> @@ -134,7 +134,7 @@ <output name="out_file1" file="merlin.bigwig" compare="sim_size"/> </test> </tests> - <help> + <help><![CDATA[ **Purpose** This tool converts bedgraph or wiggle data into bigWig data for visualisation in browsers. The JBrowse tool can display these with other interesting tracks. @@ -162,9 +162,12 @@ - The **BedGraph format** is described in detail at the `UCSC Bioinformatics website`_ -.. _UCSC Bioinformatics website: http://genome.ucsc.edu/goldenPath/help/bedgraph.html +For implementation details see wigToBigWig's `source code`_ and accompanying `docs`_. - </help> +.. _UCSC Bioinformatics website: http://genome.ucsc.edu/goldenPath/help/bedgraph.html +.. _docs: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt +.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/wigToBigWig/wigToBigWig.c +]]> </help> <citations> <citation type="doi">10.1093/bioinformatics/btq351</citation> </citations>