changeset 1:98704d357ede draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/wigtobigwig commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:27:34 +0000
parents a2f83a375bf2
children fa49730d1d4b
files wigtobigwig.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/wigtobigwig.xml	Thu Jan 18 19:45:00 2024 +0000
+++ b/wigtobigwig.xml	Sun Sep 22 07:27:34 2024 +0000
@@ -1,7 +1,7 @@
 <tool id="ucsc_wigtobigwig" name="wigtobigwig" version="@TOOL_VERSION@+galaxy0" profile="22.05">
     <description>bedGraph or Wig to bigWig converter</description>
     <macros>
-        <token name="@TOOL_VERSION@">447</token>
+        <token name="@TOOL_VERSION@">469</token>
     </macros>
     <xrefs>
         <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
@@ -134,7 +134,7 @@
             <output name="out_file1" file="merlin.bigwig" compare="sim_size"/>
         </test>
     </tests>
-    <help>
+    <help><![CDATA[
 **Purpose**
 
 This tool converts bedgraph or wiggle data into bigWig data for visualisation in browsers. The JBrowse tool can display these with other interesting tracks.
@@ -162,9 +162,12 @@
 
 - The **BedGraph format** is described in detail at the `UCSC Bioinformatics website`_
 
-.. _UCSC Bioinformatics website: http://genome.ucsc.edu/goldenPath/help/bedgraph.html
+For implementation details see wigToBigWig's `source code`_ and accompanying `docs`_.
 
-    </help>
+.. _UCSC Bioinformatics website: http://genome.ucsc.edu/goldenPath/help/bedgraph.html
+.. _docs: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/wigToBigWig/wigToBigWig.c
+]]>    </help>
     <citations>
         <citation type="doi">10.1093/bioinformatics/btq351</citation>
     </citations>