Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_wl_paired.log @ 3:475ee31c61d9 draft

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planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
author iuc
date Sun, 25 Feb 2018 13:08:17 -0500
parents
children 27ac32a22ad2
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475ee31c61d9 planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
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1 # output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat
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2 # job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
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3 # pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
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4 # blacklist_tsv : None
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5 # cell_number : False
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6 # compresslevel : 6
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7 # error_correct_threshold : 3
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8 # expect_cells : 5
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9 # extract_method : string
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10 # filter_cell_barcodes : False
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11 # log2stderr : False
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12 # loglevel : 1
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13 # method : reads
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14 # pattern : CCCNNNNNNNNXXXXX
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15 # pattern2 : None
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16 # plot_prefix : OUT
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17 # prime3 : None
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18 # random_seed : None
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19 # read2_in : /tmp/tmpibtvD6/files/000/dataset_6.dat
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20 # short_help : None
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21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'>
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23 # stdlog : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'>
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24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
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25 # subset_reads : 0
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26 # timeit_file : None
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27 # timeit_header : None
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28 # timeit_name : all
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29 # whitelist_tsv : None
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30 2018-02-25 10:50:16,016 INFO Starting barcode extraction
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31 2018-02-25 10:50:16,017 INFO Parsed 0 reads
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32 2018-02-25 10:50:16,019 INFO Starting - whitelist determination
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33 2018-02-25 10:50:17,208 INFO Finished - whitelist determination
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34 2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes
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35 2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes
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36 2018-02-25 10:50:17,208 INFO Writing out whitelist
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37 2018-02-25 10:50:17,208 INFO Parsed 100 reads
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38 2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern
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39 2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes
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40 # job finished in 1 seconds at Sun Feb 25 10:50:17 2018 -- 2.35 0.08 0.00 0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18