Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_paired.log @ 1:79436b3019e9 draft

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planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
author iuc
date Tue, 29 Aug 2017 17:37:07 -0400
parents 418b961e0576
children d1015c2516b7
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79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
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1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpREDhtd/files/003/dataset_3773.dat
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2 # job started at Tue Aug 29 14:20:44 2017 on gaius -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd
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3 # pid: 21437, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64
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4 # blacklist : None
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5 # compresslevel : 6
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6 # error_correct_cell : False
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7 # extract_method : string
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8 # filter_cell_barcode : None
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9 # filter_cell_barcodes : False
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10 # log2stderr : False
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11 # loglevel : 1
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12 # pattern : NNNXXX
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13 # pattern2 : None
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14 # prime3 : None
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15 # quality_encoding : None
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16 # quality_filter_mask : None
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17 # quality_filter_threshold : None
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18 # random_seed : None
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19 # read2_in : input_read2.gz
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20 # read2_out : out2.gz
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21 # read2_stdout : False
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22 # reads_subset : None
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23 # reconcile : False
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24 # short_help : None
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25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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26 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
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27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3773.dat' mode='a' encoding='UTF-8'>
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28 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
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29 # timeit_file : None
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30 # timeit_header : None
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31 # timeit_name : all
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32 # whitelist : None
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33 2017-08-29 14:20:44,451 INFO Starting barcode extraction
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34 2017-08-29 14:20:44,461 INFO Input Reads: 100
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35 2017-08-29 14:20:44,461 INFO Reads output: 100
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36 # job finished in 0 seconds at Tue Aug 29 14:20:44 2017 -- 0.73 0.05 0.00 0.00 -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd