Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_paired.log @ 4:e73a22ff585c draft

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planemo upload commit 76cbd559320d2a639e35ed10cb2d9522a5a77ae0
author iuc
date Mon, 16 Apr 2018 16:38:40 -0400
parents d1015c2516b7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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d1015c2516b7 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
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1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat
d1015c2516b7 planemo upload commit eea727c3bdfe36d9d16036d5ab79fb8b27c4e82e
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2 # job started at Wed Jan 3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c
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3 # pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
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4 # blacklist : None
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5 # compresslevel : 6
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6 # error_correct_cell : False
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7 # extract_method : string
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8 # filter_cell_barcode : None
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9 # filter_cell_barcodes : False
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10 # log2stderr : False
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11 # loglevel : 1
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12 # pattern : NNNXXX
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13 # pattern2 : None
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14 # prime3 : None
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15 # quality_encoding : None
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16 # quality_filter_mask : None
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17 # quality_filter_threshold : None
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18 # random_seed : None
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19 # read2_in : input_read2.gz
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20 # read2_out : out2.gz
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21 # read2_stdout : False
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22 # reads_subset : None
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23 # reconcile : False
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24 # retain_umi : None
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25 # short_help : None
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26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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27 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
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28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'>
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29 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
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30 # timeit_file : None
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31 # timeit_header : None
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32 # timeit_name : all
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33 # whitelist : None
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34 2018-01-03 17:06:39,365 INFO Starting barcode extraction
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35 2018-01-03 17:06:39,377 INFO Input Reads: 100
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36 2018-01-03 17:06:39,377 INFO Reads output: 100
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37 # job finished in 0 seconds at Wed Jan 3 17:06:39 2018 -- 0.60 0.05 0.00 0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c