Mercurial > repos > iuc > umi_tools_extract
comparison test-data/out_paired.log @ 1:79436b3019e9 draft
planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
| author | iuc |
|---|---|
| date | Tue, 29 Aug 2017 17:37:07 -0400 |
| parents | 418b961e0576 |
| children | d1015c2516b7 |
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| 0:418b961e0576 | 1:79436b3019e9 |
|---|---|
| 1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat | 1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpREDhtd/files/003/dataset_3773.dat |
| 2 # job started at Tue Aug 8 15:14:12 2017 on packer-test -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e | 2 # job started at Tue Aug 29 14:20:44 2017 on gaius -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd |
| 3 # pid: 32709, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64 | 3 # pid: 21437, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64 |
| 4 # blacklist : None | |
| 5 # compresslevel : 6 | |
| 6 # error_correct_cell : False | |
| 7 # extract_method : string | |
| 8 # filter_cell_barcode : None | |
| 9 # filter_cell_barcodes : False | |
| 4 # log2stderr : False | 10 # log2stderr : False |
| 5 # loglevel : 1 | 11 # loglevel : 1 |
| 6 # pattern : NNNXXX | 12 # pattern : NNNXXX |
| 7 # pattern2 : None | 13 # pattern2 : None |
| 8 # prime3 : False | 14 # prime3 : None |
| 9 # quality_encoding : None | 15 # quality_encoding : None |
| 16 # quality_filter_mask : None | |
| 10 # quality_filter_threshold : None | 17 # quality_filter_threshold : None |
| 11 # random_seed : None | 18 # random_seed : None |
| 12 # read2_in : input_read2.gz | 19 # read2_in : input_read2.gz |
| 13 # read2_out : out2.gz | 20 # read2_out : out2.gz |
| 21 # read2_stdout : False | |
| 22 # reads_subset : None | |
| 23 # reconcile : False | |
| 14 # short_help : None | 24 # short_help : None |
| 15 # split : False | |
| 16 # stats : True | |
| 17 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | 25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> |
| 18 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> | 26 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> |
| 19 # stdlog : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat' mode='a' encoding='UTF-8'> | 27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3773.dat' mode='a' encoding='UTF-8'> |
| 20 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'> | 28 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'> |
| 21 # timeit_file : None | 29 # timeit_file : None |
| 22 # timeit_header : None | 30 # timeit_header : None |
| 23 # timeit_name : all | 31 # timeit_name : all |
| 24 Barcode UMI Sample Count | 32 # whitelist : None |
| 25 AAAAGT AAA AGT 1 | 33 2017-08-29 14:20:44,451 INFO Starting barcode extraction |
| 26 TTTTTT TTT TTT 1 | 34 2017-08-29 14:20:44,461 INFO Input Reads: 100 |
| 27 TTGGTT TTG GTT 1 | 35 2017-08-29 14:20:44,461 INFO Reads output: 100 |
| 28 AAGTTT AAG TTT 1 | 36 # job finished in 0 seconds at Tue Aug 29 14:20:44 2017 -- 0.73 0.05 0.00 0.00 -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd |
| 29 ATATAA ATA TAA 1 | |
| 30 GTTTTT GTT TTT 4 | |
| 31 GTTTTA GTT TTA 1 | |
| 32 TATAGA TAT AGA 1 | |
| 33 AAGTAT AAG TAT 1 | |
| 34 TTATTT TTA TTT 1 | |
| 35 AGATGA AGA TGA 1 | |
| 36 TTTTAG TTT TAG 2 | |
| 37 GTGTTT GTG TTT 1 | |
| 38 GTATGT GTA TGT 1 | |
| 39 AGTGTT AGT GTT 1 | |
| 40 AGAAAT AGA AAT 1 | |
| 41 TATAAA TAT AAA 1 | |
| 42 TGTATC TGT ATC 1 | |
| 43 TAAAAT TAA AAT 1 | |
| 44 ATTATT ATT ATT 1 | |
| 45 ATTTAG ATT TAG 1 | |
| 46 TATATT TAT ATT 1 | |
| 47 ATTTGG ATT TGG 1 | |
| 48 AAAATA AAA ATA 1 | |
| 49 AAGTTA AAG TTA 1 | |
| 50 GTTGTA GTT GTA 1 | |
| 51 TTTGAA TTT GAA 1 | |
| 52 ATTTGA ATT TGA 1 | |
| 53 TTTATA TTT ATA 2 | |
| 54 ATACGT ATA CGT 1 | |
| 55 GGTTAG GGT TAG 1 | |
| 56 GGTGTT GGT GTT 1 | |
| 57 TGGTTG TGG TTG 1 | |
| 58 AGTTAT AGT TAT 1 | |
| 59 GAGTAG GAG TAG 1 | |
| 60 TGTGTT TGT GTT 1 | |
| 61 TGAATT TGA ATT 1 | |
| 62 TTTAGG TTT AGG 2 | |
| 63 TAGATG TAG ATG 1 | |
| 64 TTGGAT TTG GAT 1 | |
| 65 TTGGAC TTG GAC 1 | |
| 66 TGTATG TGT ATG 1 | |
| 67 AGAGTG AGA GTG 1 | |
| 68 AGAATA AGA ATA 1 | |
| 69 TTGTTT TTG TTT 1 | |
| 70 AATATA AAT ATA 1 | |
| 71 TTATTA TTA TTA 1 | |
| 72 TTAAAG TTA AAG 2 | |
| 73 AGGAGT AGG AGT 1 | |
| 74 ATAAGT ATA AGT 1 | |
| 75 TTGTGG TTG TGG 1 | |
| 76 GTATTA GTA TTA 1 | |
| 77 AGTGGA AGT GGA 1 | |
| 78 TTTGGG TTT GGG 1 | |
| 79 TAAGAG TAA GAG 1 | |
| 80 TTGGGA TTG GGA 1 | |
| 81 TATAGG TAT AGG 1 | |
| 82 TTTTTG TTT TTG 1 | |
| 83 AAGAGG AAG AGG 1 | |
| 84 GAGAGA GAG AGA 1 | |
| 85 TTGGTG TTG GTG 1 | |
| 86 TAGAGG TAG AGG 1 | |
| 87 ATTTTG ATT TTG 1 | |
| 88 TGGATG TGG ATG 1 | |
| 89 ATTTTT ATT TTT 1 | |
| 90 TTATAT TTA TAT 1 | |
| 91 TGTTTG TGT TTG 1 | |
| 92 GTTGGT GTT GGT 1 | |
| 93 TCTTTA TCT TTA 1 | |
| 94 ATTGTT ATT GTT 2 | |
| 95 ATAAGA ATA AGA 1 | |
| 96 TATCGA TAT CGA 1 | |
| 97 TTTGTT TTT GTT 1 | |
| 98 GTGTAT GTG TAT 1 | |
| 99 AGTGAA AGT GAA 1 | |
| 100 GTTGTG GTT GTG 1 | |
| 101 TAGTGA TAG TGA 1 | |
| 102 TATTGA TAT TGA 1 | |
| 103 TTAATG TTA ATG 1 | |
| 104 TTTAAA TTT AAA 2 | |
| 105 AGAAAG AGA AAG 1 | |
| 106 TTTTGT TTT TGT 1 | |
| 107 TTATAG TTA TAG 1 | |
| 108 AGGTGT AGG TGT 1 | |
| 109 TTAGTT TTA GTT 1 | |
| 110 TTTAAT TTT AAT 1 | |
| 111 AGGATG AGG ATG 1 | |
| 112 ATATAT ATA TAT 1 | |
| 113 AGAGTT AGA GTT 1 | |
| 114 GAGAAA GAG AAA 1 | |
| 115 ATATGA ATA TGA 1 | |
| 116 # job finished in 0 seconds at Tue Aug 8 15:14:12 2017 -- 0.41 0.02 0.00 0.00 -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e |