Mercurial > repos > iuc > umi_tools_extract
diff test-data/out_wl_paired.log @ 3:475ee31c61d9 draft
planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2018 13:08:17 -0500 |
| parents | |
| children | 27ac32a22ad2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out_wl_paired.log Sun Feb 25 13:08:17 2018 -0500 @@ -0,0 +1,40 @@ +# output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat +# job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18 +# pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64 +# blacklist_tsv : None +# cell_number : False +# compresslevel : 6 +# error_correct_threshold : 3 +# expect_cells : 5 +# extract_method : string +# filter_cell_barcodes : False +# log2stderr : False +# loglevel : 1 +# method : reads +# pattern : CCCNNNNNNNNXXXXX +# pattern2 : None +# plot_prefix : OUT +# prime3 : None +# random_seed : None +# read2_in : /tmp/tmpibtvD6/files/000/dataset_6.dat +# short_help : None +# stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> +# stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'> +# stdlog : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'> +# stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> +# subset_reads : 0 +# timeit_file : None +# timeit_header : None +# timeit_name : all +# whitelist_tsv : None +2018-02-25 10:50:16,016 INFO Starting barcode extraction +2018-02-25 10:50:16,017 INFO Parsed 0 reads +2018-02-25 10:50:16,019 INFO Starting - whitelist determination +2018-02-25 10:50:17,208 INFO Finished - whitelist determination +2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes +2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes +2018-02-25 10:50:17,208 INFO Writing out whitelist +2018-02-25 10:50:17,208 INFO Parsed 100 reads +2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern +2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes +# job finished in 1 seconds at Sun Feb 25 10:50:17 2018 -- 2.35 0.08 0.00 0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18