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view test-data/out_paired.log @ 0:418b961e0576 draft

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planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
author iuc
date Thu, 10 Aug 2017 06:37:09 -0400
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children 79436b3019e9
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# output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat
# job started at Tue Aug  8 15:14:12 2017 on packer-test -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e
# pid: 32709, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64
# log2stderr                              : False
# loglevel                                : 1
# pattern                                 : NNNXXX
# pattern2                                : None
# prime3                                  : False
# quality_encoding                        : None
# quality_filter_threshold                : None
# random_seed                             : None
# read2_in                                : input_read2.gz
# read2_out                               : out2.gz
# short_help                              : None
# split                                   : False
# stats                                   : True
# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
# stdin                                   : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
# stdlog                                  : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_863.dat' mode='a' encoding='UTF-8'>
# stdout                                  : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
# timeit_file                             : None
# timeit_header                           : None
# timeit_name                             : all
Barcode	UMI	Sample	Count
AAAAGT	AAA	AGT	1
TTTTTT	TTT	TTT	1
TTGGTT	TTG	GTT	1
AAGTTT	AAG	TTT	1
ATATAA	ATA	TAA	1
GTTTTT	GTT	TTT	4
GTTTTA	GTT	TTA	1
TATAGA	TAT	AGA	1
AAGTAT	AAG	TAT	1
TTATTT	TTA	TTT	1
AGATGA	AGA	TGA	1
TTTTAG	TTT	TAG	2
GTGTTT	GTG	TTT	1
GTATGT	GTA	TGT	1
AGTGTT	AGT	GTT	1
AGAAAT	AGA	AAT	1
TATAAA	TAT	AAA	1
TGTATC	TGT	ATC	1
TAAAAT	TAA	AAT	1
ATTATT	ATT	ATT	1
ATTTAG	ATT	TAG	1
TATATT	TAT	ATT	1
ATTTGG	ATT	TGG	1
AAAATA	AAA	ATA	1
AAGTTA	AAG	TTA	1
GTTGTA	GTT	GTA	1
TTTGAA	TTT	GAA	1
ATTTGA	ATT	TGA	1
TTTATA	TTT	ATA	2
ATACGT	ATA	CGT	1
GGTTAG	GGT	TAG	1
GGTGTT	GGT	GTT	1
TGGTTG	TGG	TTG	1
AGTTAT	AGT	TAT	1
GAGTAG	GAG	TAG	1
TGTGTT	TGT	GTT	1
TGAATT	TGA	ATT	1
TTTAGG	TTT	AGG	2
TAGATG	TAG	ATG	1
TTGGAT	TTG	GAT	1
TTGGAC	TTG	GAC	1
TGTATG	TGT	ATG	1
AGAGTG	AGA	GTG	1
AGAATA	AGA	ATA	1
TTGTTT	TTG	TTT	1
AATATA	AAT	ATA	1
TTATTA	TTA	TTA	1
TTAAAG	TTA	AAG	2
AGGAGT	AGG	AGT	1
ATAAGT	ATA	AGT	1
TTGTGG	TTG	TGG	1
GTATTA	GTA	TTA	1
AGTGGA	AGT	GGA	1
TTTGGG	TTT	GGG	1
TAAGAG	TAA	GAG	1
TTGGGA	TTG	GGA	1
TATAGG	TAT	AGG	1
TTTTTG	TTT	TTG	1
AAGAGG	AAG	AGG	1
GAGAGA	GAG	AGA	1
TTGGTG	TTG	GTG	1
TAGAGG	TAG	AGG	1
ATTTTG	ATT	TTG	1
TGGATG	TGG	ATG	1
ATTTTT	ATT	TTT	1
TTATAT	TTA	TAT	1
TGTTTG	TGT	TTG	1
GTTGGT	GTT	GGT	1
TCTTTA	TCT	TTA	1
ATTGTT	ATT	GTT	2
ATAAGA	ATA	AGA	1
TATCGA	TAT	CGA	1
TTTGTT	TTT	GTT	1
GTGTAT	GTG	TAT	1
AGTGAA	AGT	GAA	1
GTTGTG	GTT	GTG	1
TAGTGA	TAG	TGA	1
TATTGA	TAT	TGA	1
TTAATG	TTA	ATG	1
TTTAAA	TTT	AAA	2
AGAAAG	AGA	AAG	1
TTTTGT	TTT	TGT	1
TTATAG	TTA	TAG	1
AGGTGT	AGG	TGT	1
TTAGTT	TTA	GTT	1
TTTAAT	TTT	AAT	1
AGGATG	AGG	ATG	1
ATATAT	ATA	TAT	1
AGAGTT	AGA	GTT	1
GAGAAA	GAG	AAA	1
ATATGA	ATA	TGA	1
# job finished in 0 seconds at Tue Aug  8 15:14:12 2017 --  0.41  0.02  0.00  0.00 -- cba9bf6d-f8cd-49c4-8184-3f4a090cbc3e