Mercurial > repos > iuc > umi_tools_group
comparison test-data/out_single.log @ 0:860bc357b678 draft
planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
| author | iuc |
|---|---|
| date | Tue, 29 Aug 2017 17:37:21 -0400 |
| parents | |
| children | f73f13641bb6 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:860bc357b678 |
|---|---|
| 1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpREDhtd/files/003/dataset_3766.dat --stdout /tmp/tmpREDhtd/files/003/dataset_3767.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpREDhtd/files/003/dataset_3768.dat | |
| 2 # job started at Tue Aug 29 14:20:26 2017 on gaius -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393 | |
| 3 # pid: 21338, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64 | |
| 4 # blacklist : None | |
| 5 # compresslevel : 6 | |
| 6 # error_correct_cell : False | |
| 7 # extract_method : string | |
| 8 # filter_cell_barcode : None | |
| 9 # filter_cell_barcodes : False | |
| 10 # log2stderr : False | |
| 11 # loglevel : 1 | |
| 12 # pattern : XXXNNN | |
| 13 # pattern2 : None | |
| 14 # prime3 : True | |
| 15 # quality_encoding : phred33 | |
| 16 # quality_filter_mask : None | |
| 17 # quality_filter_threshold : 10 | |
| 18 # random_seed : None | |
| 19 # read2_in : None | |
| 20 # read2_out : False | |
| 21 # read2_stdout : False | |
| 22 # reads_subset : None | |
| 23 # reconcile : False | |
| 24 # short_help : None | |
| 25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
| 26 # stdin : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3766.dat' mode='r' encoding='UTF-8'> | |
| 27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3768.dat' mode='a' encoding='UTF-8'> | |
| 28 # stdout : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3767.dat' mode='w' encoding='UTF-8'> | |
| 29 # timeit_file : None | |
| 30 # timeit_header : None | |
| 31 # timeit_name : all | |
| 32 # whitelist : None | |
| 33 2017-08-29 14:20:26,493 INFO Starting barcode extraction | |
| 34 2017-08-29 14:20:26,495 INFO Input Reads: 100 | |
| 35 2017-08-29 14:20:26,495 INFO Reads output: 72 | |
| 36 2017-08-29 14:20:26,495 INFO filtered: umi quality: 28 | |
| 37 # job finished in 0 seconds at Tue Aug 29 14:20:26 2017 -- 0.75 0.02 0.00 0.00 -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393 |