Mercurial > repos > iuc > umi_tools_group

annotate test-data/out_single.log @ 0:860bc357b678 draft

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planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
author iuc
date Tue, 29 Aug 2017 17:37:21 -0400
parents
children f73f13641bb6
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860bc357b678 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
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1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpREDhtd/files/003/dataset_3766.dat --stdout /tmp/tmpREDhtd/files/003/dataset_3767.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpREDhtd/files/003/dataset_3768.dat
860bc357b678 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
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2 # job started at Tue Aug 29 14:20:26 2017 on gaius -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393
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3 # pid: 21338, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64
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4 # blacklist : None
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5 # compresslevel : 6
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6 # error_correct_cell : False
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7 # extract_method : string
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8 # filter_cell_barcode : None
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9 # filter_cell_barcodes : False
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10 # log2stderr : False
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11 # loglevel : 1
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12 # pattern : XXXNNN
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13 # pattern2 : None
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14 # prime3 : True
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15 # quality_encoding : phred33
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16 # quality_filter_mask : None
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17 # quality_filter_threshold : 10
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18 # random_seed : None
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19 # read2_in : None
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20 # read2_out : False
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21 # read2_stdout : False
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22 # reads_subset : None
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23 # reconcile : False
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24 # short_help : None
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25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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26 # stdin : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3766.dat' mode='r' encoding='UTF-8'>
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27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3768.dat' mode='a' encoding='UTF-8'>
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28 # stdout : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3767.dat' mode='w' encoding='UTF-8'>
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29 # timeit_file : None
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30 # timeit_header : None
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31 # timeit_name : all
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32 # whitelist : None
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33 2017-08-29 14:20:26,493 INFO Starting barcode extraction
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34 2017-08-29 14:20:26,495 INFO Input Reads: 100
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35 2017-08-29 14:20:26,495 INFO Reads output: 72
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36 2017-08-29 14:20:26,495 INFO filtered: umi quality: 28
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37 # job finished in 0 seconds at Tue Aug 29 14:20:26 2017 -- 0.75 0.02 0.00 0.00 -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393