Mercurial > repos > iuc > varvamp
view test-data/test4.log @ 4:36c91ff33d70 draft default tip
planemo upload for repository https://github.com/jonas-fuchs/varVAMP commit 11f2603dc33eecd4fb6f6239143d13c53492fd86
author | iuc |
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date | Sat, 15 Jun 2024 15:43:28 +0000 |
parents | 462e62be07e1 |
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VARVAMP log MODE = single ARG SETTINGS THRESHOLD = 0.8 PRIMER_ALLOWED_N_AMB = 3 AMPLICON_OPT_LENGTH = 300 AMPLICON_MAX_LENGTH = 400 REPORT_N_AMPLICONS = 5 CONFIG SETTINGS PRIMER_TMP = (56, 63, 60) PRIMER_GC_RANGE = (20, 80, 50) PRIMER_SIZES = (18, 24, 21) PRIMER_HAIRPIN = 47 PRIMER_MAX_POLYX = 4 PRIMER_MAX_DINUC_REPEATS = 4 PRIMER_GC_END = (1, 3) PRIMER_MAX_DIMER_TMP = 47 PRIMER_MIN_3_WITHOUT_AMB = 3 PCR_MV_CONC = 100.0 PCR_DV_CONC = 2.0 PCR_DNTP_CONC = 0.8 PCR_DNA_CONC = 15.0 PRIMER_TM_PENALTY = 2.0 PRIMER_GC_PENALTY = 0.2 PRIMER_SIZE_PENALTY = 0.5 PRIMER_MAX_BASE_PENALTY = 10 PRIMER_3_PENALTY = (32, 16, 8, 4, 2) PRIMER_PERMUTATION_PENALTY = 0.1