Mercurial > repos > iuc > virhunter
diff tool-data/virhunter.loc.sample @ 2:ea2cccb9f73e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
author | iuc |
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date | Thu, 05 Jan 2023 14:27:54 +0000 |
parents | 457fd8fd681a |
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--- a/tool-data/virhunter.loc.sample Wed Nov 30 17:31:52 2022 +0000 +++ b/tool-data/virhunter.loc.sample Thu Jan 05 14:27:54 2023 +0000 @@ -1,29 +1,27 @@ #This is a sample file distributed with Galaxy that enables tools -#to use a directory of Samtools indexed sequences data files. You will need -#to create these data files and then create a fasta_indexes.loc file +#to use a directory of virhunter hdf5 model files. You will need +#to create these data files and then create a virhunter.loc file #similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The fasta_indexes.loc +#the directories in which those files are stored. The virhunter.loc #file has this format (white space characters are TAB characters): # -# <unique_build_id> <dbkey> <display_name> <file_base_path> +# <value> <name> <path> # -#So, for example, if you had hg19 Canonical indexed stored in +#So, for example, if you had fungi hdf5 model files stored in # -# /depot/data2/galaxy/hg19/sam/, +# /tool-data/weights/peach/, # -#then the fasta_indexes.loc entry would look like this: +#then the virhunter.loc entry would look like this: # -#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa +#peach peach /data/databases/path/weights/peach # -#and your /depot/data2/galaxy/hg19/sam/ directory -#would contain hg19canon.fa and hg19canon.fa.fai files. +#and your /tool-data/weights/peach/ directory +#would contain model_5_500.h5,model_7_500.h5,model_10_500.h5 and model_5_1000.h5, model_7_1000.h5, model_10_1000.h5 files. # -#Your fasta_indexes.loc file should include an entry per line for +#Your virhunter.loc file should include an entry per line for #each index set you have stored. The file in the path does actually #exist, but it should never be directly used. Instead, the name serves #as a prefix for the index file. For example: # -#hg18canon hg18 Human (Homo sapiens): hg18 Canonical /depot/data2/galaxy/hg18/sam/hg18canon.fa -#hg18full hg18 Human (Homo sapiens): hg18 Full /depot/data2/galaxy/hg18/sam/hg18full.fa -#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa -#hg19full hg19 Human (Homo sapiens): hg19 Full /depot/data2/galaxy/hg19/sam/hg19full.fa \ No newline at end of file +#peach peach /data/databases/path/weights/peach +#grapevine grapevine /data/databases/path/weights/peach