Mercurial > repos > iuc > virhunter
annotate tool-data/virhunter.loc.sample @ 2:ea2cccb9f73e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
author | iuc |
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date | Thu, 05 Jan 2023 14:27:54 +0000 |
parents | 457fd8fd681a |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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1 #This is a sample file distributed with Galaxy that enables tools |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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2 #to use a directory of virhunter hdf5 model files. You will need |
ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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3 #to create these data files and then create a virhunter.loc file |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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4 #similar to this one (store it in this directory) that points to |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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5 #the directories in which those files are stored. The virhunter.loc |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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6 #file has this format (white space characters are TAB characters): |
457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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7 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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8 # <value> <name> <path> |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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9 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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10 #So, for example, if you had fungi hdf5 model files stored in |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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11 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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12 # /tool-data/weights/peach/, |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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13 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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14 #then the virhunter.loc entry would look like this: |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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15 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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16 #peach peach /data/databases/path/weights/peach |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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17 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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18 #and your /tool-data/weights/peach/ directory |
ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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19 #would contain model_5_500.h5,model_7_500.h5,model_10_500.h5 and model_5_1000.h5, model_7_1000.h5, model_10_1000.h5 files. |
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457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff
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20 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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21 #Your virhunter.loc file should include an entry per line for |
0
457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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22 #each index set you have stored. The file in the path does actually |
457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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23 #exist, but it should never be directly used. Instead, the name serves |
457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff
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24 #as a prefix for the index file. For example: |
457fd8fd681a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
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25 # |
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ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
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26 #peach peach /data/databases/path/weights/peach |
ea2cccb9f73e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents:
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27 #grapevine grapevine /data/databases/path/weights/peach |