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comparison shuffling.xml @ 2:f29e21388219 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author iuc
date Thu, 17 Dec 2015 12:53:39 -0500
parents fae6527990af
children 4258854759ba
comparison
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1:8c4e2933a17a 2:f29e21388219
1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.0"> 1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.1">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>vsearch_macros.xml</import> 4 <import>vsearch_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
8 <expand macro="version_command" /> 8 <expand macro="version_command" />
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 vsearch 11 vsearch
12 @GENERAL@ 12 @GENERAL@
13 --output $outfile 13 --output "$outfile"
14 --seed $seed 14 --seed "$seed"
15 --shuffle $infile 15 --shuffle "$infile"
16 --topn $topn 16 #if str( $topn ):
17 --topn "$topn"
18 #end if
17 ]]> 19 ]]>
18 </command> 20 </command>
19 <inputs> 21 <inputs>
20 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" /> 22 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" />
21 <param name="seed" type="integer" value="0" label="Seed" 23 <param name="seed" type="integer" value="0" label="Seed"
46 --topn INT output just first n sequences 48 --topn INT output just first n sequences
47 49
48 50
49 @EXTERNAL_DOCUMENTATION@ 51 @EXTERNAL_DOCUMENTATION@
50 52
51 -------
52
53 @REFERENCES@
54
55 53
56 ]]> 54 ]]>
57 </help> 55 </help>
58 <expand macro="citations" /> 56 <expand macro="citations" />
59 </tool> 57 </tool>