Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna

diff bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py @ 29:104d6756bcbc draft

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author jackcurragh
date Tue, 12 Jul 2022 13:40:46 +0000
parents 44e61af3637d
children
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--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:31:22 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:40:46 2022 +0000
@@ -394,7 +394,7 @@
                 keepends = ''
             if options.output_unmapped_reads_l or options.output_unmapped_reads_r or options.output_unmapped_reads:
                 aligning_cmds = '-q %s %s -p %s %s %s %s %s %s %s %s %s %s %s %s %s ' \
-                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s --suppress' % \
+                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s 1> /dev/null' % \
                             ( maxInsert, mateOrient, options.threads, suppressHeader,
                               colorspace, skip, alignLimit, trimH, trimL, maxMismatches,
                               mismatchSeed, mismatchQual, seedLen, rounding, minInsert,