Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna

changeset 29:104d6756bcbc draft

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author jackcurragh
date Tue, 12 Jul 2022 13:40:46 +0000
parents 44e61af3637d
children a511e084e4e7
files bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
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--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:31:22 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:40:46 2022 +0000
@@ -394,7 +394,7 @@
                 keepends = ''
             if options.output_unmapped_reads_l or options.output_unmapped_reads_r or options.output_unmapped_reads:
                 aligning_cmds = '-q %s %s -p %s %s %s %s %s %s %s %s %s %s %s %s %s ' \
-                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s --suppress' % \
+                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s 1> /dev/null' % \
                             ( maxInsert, mateOrient, options.threads, suppressHeader,
                               colorspace, skip, alignLimit, trimH, trimL, maxMismatches,
                               mismatchSeed, mismatchQual, seedLen, rounding, minInsert,
--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.xml	Tue Jul 12 13:31:22 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.xml	Tue Jul 12 13:40:46 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_rRNA_tRNA_removal_wrapper" name="Bowtie ncRNA Removal" version="1.8.0">
+<tool id="bowtie_rRNA_tRNA_removal_wrapper" name="Bowtie ncRNA Removal" version="1.9.0">
   <description>Remove rRNA and tRNA using Bowtie</description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>