annotate generate_custom_track/generate_custom_track.xml @ 3:f46c581ca166 draft

Uploaded

<tool id="generate_custom_track" name="Generate Custom Track" version="0.2">
    <description>Generates a Custom Track File for GWIPS-viz.</description>
    <command>
    python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1
    </command>

    <inputs>
        <param name="input1" type="select" label="File Type">
            <option value="bigWig" selected="True">bigWig</option>
            <option value="bigBed">bigBed</option>
        </param>
        <param name="input2" type="text" label="URL of File (copy link from history)" />
        <param name="input3" type="text" label="Name of this sample" />
        <param name="input4" type="text" label="Description of this sample" />
        <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" />
    </inputs>
    <outputs>
       <data name="output1" format="txt"/>
    </outputs>

    <help>
**What it does**

Generates a custom track file for GWIPS-viz. 

This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
    </help>
</tool>