annotate generate_custom_track/generate_custom_track.xml @ 4:686a1d619b96 draft default tip

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author jackcurragh
date Fri, 23 Sep 2022 13:37:43 +0000
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1 <tool id="generate_custom_track" name="Generate Custom Track" version="0.2">
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2 <description>Generates a Custom Track File for GWIPS-viz.</description>
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3 <command>
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4 python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1
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5 </command>
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7 <inputs>
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8 <param name="input1" type="select" label="File Type">
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9 <option value="bigWig" selected="True">bigWig</option>
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10 <option value="bigBed">bigBed</option>
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11 </param>
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12 <param name="input2" type="text" label="URL of File (copy link from history)" />
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13 <param name="input3" type="text" label="Name of this sample" />
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14 <param name="input4" type="text" label="Description of this sample" />
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15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" />
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16 </inputs>
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17 <outputs>
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18 <data name="output1" format="txt"/>
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19 </outputs>
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20
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21 <help>
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22 **What it does**
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23
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24 Generates a custom track file for GWIPS-viz.
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26 This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
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27 </help>
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28 </tool>