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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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15 :link {
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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258 padding: 1.5em 1em;
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356 footer {
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362 footer :link {
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363 color: #5588cc;
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364 }
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365
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366 </style>
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367
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368 <script type="text/javascript">
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369 function toggle_visibility(id) {
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370 var e = document.getElementById(id);
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371 if(e.style.display != 'block')
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372 e.style.display = 'block';
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373 else
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374 e.style.display = 'none';
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375 }
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376 </script>
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377
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378 </head>
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379
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380
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381 <body>
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382
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383 <div id="strip_html_warning">
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384 <!-- This div should be hidden by the header css block. Galaxy
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385 strips all css, breaking this page but making this warning
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386 visible. This warning contains some ugly old skool tabular html
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387 layout that is not stripped. -->
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388 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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389 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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390 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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391 </b></font></td></tr></table>
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392 </div>
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393
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394 <div id=content>
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395
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114
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396 <section class=header>
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397
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398 <h1>Nucleotide Blast results</h1>
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399
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400 <table class=headerdata>
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401 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
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402 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
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403 </table>
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404
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405 </section>
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406
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106
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407
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408 <section class=index>
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114
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409 <h2>Queries</h2>
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106
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410
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411 <div class=indexentry><a href="#match1">
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412 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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413 (20 letters, 2 hits)
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414 </a></div>
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415 <div class=indexentry><a href="#match2">
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416 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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417 (20 letters, 0 hits)
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418 </a></div>
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419 <div class=indexentry><a href="#match3">
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420 Query_3: Probe|NOST-Spec_(Genetic_ID)
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421 (20 letters, 3 hits)
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422 </a></div>
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423 <div class=indexentry><a href="#match4">
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424 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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425 (24 letters, 0 hits)
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426 </a></div>
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427 <div class=indexentry><a href="#match5">
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428 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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429 (20 letters, 0 hits)
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430 </a></div>
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431 <div class=indexentry><a href="#match6">
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432 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
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433 (25 letters, 2 hits)
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434 </a></div>
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435 <div class=indexentry><a href="#match7">
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436 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
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437 (74 letters, 2 hits)
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438 </a></div>
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439
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440 </section>
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441
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442
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443 <section class=match id=match1>
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444
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114
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445 <h2>Nucleotide Sequence (20 letters)</h2>
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106
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446
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447 <section class=header>
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448
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449 <table class=headerdata>
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114
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450 <tr><td class=param>Query number:</td><td>1</td></tr>
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106
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451 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
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114
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452 <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
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453 <tr><td class=param>Length:</td><td>20</td></tr>
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106
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454 </table>
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455
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456 </section>
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457
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458
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459 <section class=graphics>
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114
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460 <h3>Graphic Summary</h3>
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106
|
461
|
|
|
462 <div class=grey>
|
|
114
|
463 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
|
|
106
|
464
|
|
|
465 <div class=defline id=defline1>
|
|
|
466 Mouse-over to show defline and scores, click to show alignments
|
|
|
467 </div>
|
|
|
468
|
|
|
469 <div class=graphic>
|
|
114
|
470 <h5 class=darkHeader>Color key for alignment scores</h5>
|
|
106
|
471 <div class=legend><div class=graphicrow>
|
|
|
472 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
473 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
474 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
475 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
476 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
477 </div></div>
|
|
|
478 <div style="clear: left"></div>
|
|
|
479
|
|
|
480 <div class=tablewrapper>
|
|
|
481
|
|
|
482 <div class=scale>
|
|
|
483 <div>query:</div>
|
|
|
484 <div class=graphicrow>
|
|
|
485 <div>
|
|
|
486 <div class=graphicitem style="width: 10%">
|
|
|
487 <div>2</div>
|
|
|
488 </div>
|
|
|
489 <div class=graphicitem style="width: 10%">
|
|
|
490 <div>4</div>
|
|
|
491 </div>
|
|
|
492 <div class=graphicitem style="width: 10%">
|
|
|
493 <div>6</div>
|
|
|
494 </div>
|
|
|
495 <div class=graphicitem style="width: 10%">
|
|
|
496 <div>8</div>
|
|
|
497 </div>
|
|
|
498 <div class=graphicitem style="width: 10%">
|
|
|
499 <div>10</div>
|
|
|
500 </div>
|
|
|
501 <div class=graphicitem style="width: 10%">
|
|
|
502 <div>12</div>
|
|
|
503 </div>
|
|
|
504 <div class=graphicitem style="width: 10%">
|
|
|
505 <div>14</div>
|
|
|
506 </div>
|
|
|
507 <div class=graphicitem style="width: 10%">
|
|
|
508 <div>16</div>
|
|
|
509 </div>
|
|
|
510 <div class=graphicitem style="width: 10%">
|
|
|
511 <div>18</div>
|
|
|
512 </div>
|
|
|
513 <div class=graphicitem style="width: 10%">
|
|
|
514 <div>20</div>
|
|
|
515 </div>
|
|
|
516 </div>
|
|
|
517 </div>
|
|
|
518 <div style="clear: left"></div>
|
|
|
519 </div>
|
|
|
520
|
|
|
521 <a class=matchresult
|
|
|
522 href="#hit1-1"
|
|
|
523 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
524 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
525 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
526 <div class="matchrow graphicrow">
|
|
|
527 <div class="matchitem graphicitem"
|
|
|
528 style="background-color: black; width: 100%"></div>
|
|
|
529 </div>
|
|
|
530 </a>
|
|
|
531
|
|
|
532 <a class=matchresult
|
|
|
533 href="#hit1-2"
|
|
|
534 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
535 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
536 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
537 <div class="matchrow graphicrow">
|
|
|
538 <div class="matchitem graphicitem"
|
|
|
539 style="background-color: black; width: 100%"></div>
|
|
|
540 </div>
|
|
|
541 </a>
|
|
|
542
|
|
|
543 </div>
|
|
|
544 </div>
|
|
|
545 </div>
|
|
|
546 </section>
|
|
|
547
|
|
|
548
|
|
|
549
|
|
|
550 <section class=descriptions>
|
|
114
|
551 <h3>Descriptions</h3>
|
|
106
|
552
|
|
|
553 <div class=grey><div class=white>
|
|
114
|
554 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
|
|
106
|
555
|
|
|
556 <table class=descriptiontable>
|
|
|
557 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
558 <tr>
|
|
|
559 <th>Description</th>
|
|
|
560 <th>Max score</th>
|
|
|
561 <th>Total score</th>
|
|
|
562 <th>Query cover</th>
|
|
|
563 <th>E value</th>
|
|
|
564 <th>Ident</th>
|
|
|
565 <th>Accession</th>
|
|
|
566 </tr>
|
|
|
567 <tr>
|
|
|
568 <td><div><a href="#hit1-1"
|
|
|
569 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
570 id="description1-1">
|
|
|
571 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
572 </a></div></td>
|
|
|
573 <td>40.1</td>
|
|
|
574 <td>40.1</td>
|
|
|
575 <td>100%</td>
|
|
|
576 <td>1.513e-07</td>
|
|
|
577 <td>100%</td>
|
|
|
578 <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
|
|
|
579 </tr>
|
|
|
580 <tr>
|
|
|
581 <td><div><a href="#hit1-2"
|
|
|
582 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
583 id="description1-2">
|
|
|
584 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
585 </a></div></td>
|
|
|
586 <td>40.1</td>
|
|
|
587 <td>40.1</td>
|
|
|
588 <td>100%</td>
|
|
|
589 <td>1.513e-07</td>
|
|
|
590 <td>100%</td>
|
|
|
591 <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
|
|
|
592 </tr>
|
|
|
593 </table>
|
|
|
594
|
|
|
595 </div></div>
|
|
|
596 </section>
|
|
|
597
|
|
|
598
|
|
|
599
|
|
|
600 <section class=alignments>
|
|
114
|
601 <h3>Alignments</h3>
|
|
106
|
602
|
|
|
603 <div class=grey><div class=white>
|
|
|
604 <div class=alignment id=hit1-1>
|
|
|
605
|
|
|
606 <div class=linkheader>
|
|
|
607 <div class=right><a href="#description1-1">Descriptions</a></div>
|
|
|
608 <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
|
|
|
609 </div>
|
|
|
610
|
|
|
611 <div class=title>
|
|
|
612 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
613 <p class=titleinfo>
|
|
|
614 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
|
|
|
615 <span class=b>Length:</span> 2457
|
|
|
616 <span class=b>Number of Matches:</span> 1
|
|
|
617 </p>
|
|
|
618 </div>
|
|
|
619
|
|
|
620
|
|
|
621 <div class=hotspot id=hotspot1-1-1>
|
|
|
622 <p class=range>
|
|
|
623 <span class=range>Range 1: 2119 to 2138</span>
|
|
|
624 </p>
|
|
|
625
|
|
|
626 <table class=hotspotstable>
|
|
|
627 <tr>
|
|
|
628 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
629 </tr>
|
|
|
630 <tr>
|
|
|
631 <td>40.1 bits(20)</td>
|
|
|
632 <td>0.0</td>
|
|
|
633 <td>20/20(100%)</td>
|
|
|
634 <td>0/20(0%)</td>
|
|
|
635 <td>Plus/Plus</td>
|
|
|
636 </tr>
|
|
|
637 </table>
|
|
|
638
|
|
|
639 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
640 ||||||||||||||||||||
|
|
|
641 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
|
|
|
642 </div>
|
|
|
643
|
|
|
644 </div>
|
|
|
645
|
|
|
646 <div class=alignment id=hit1-2>
|
|
|
647
|
|
|
648 <div class=linkheader>
|
|
|
649 <div class=right><a href="#description1-2">Descriptions</a></div>
|
|
|
650 <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
|
|
|
651 </div>
|
|
|
652
|
|
|
653 <div class=title>
|
|
|
654 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
655 <p class=titleinfo>
|
|
|
656 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
|
|
|
657 <span class=b>Length:</span> 323
|
|
|
658 <span class=b>Number of Matches:</span> 1
|
|
|
659 </p>
|
|
|
660 </div>
|
|
|
661
|
|
|
662
|
|
|
663 <div class=hotspot id=hotspot1-2-1>
|
|
|
664 <p class=range>
|
|
|
665 <span class=range>Range 1: 200 to 219</span>
|
|
|
666 </p>
|
|
|
667
|
|
|
668 <table class=hotspotstable>
|
|
|
669 <tr>
|
|
|
670 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
671 </tr>
|
|
|
672 <tr>
|
|
|
673 <td>40.1 bits(20)</td>
|
|
|
674 <td>0.0</td>
|
|
|
675 <td>20/20(100%)</td>
|
|
|
676 <td>0/20(0%)</td>
|
|
|
677 <td>Plus/Plus</td>
|
|
|
678 </tr>
|
|
|
679 </table>
|
|
|
680
|
|
|
681 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
682 ||||||||||||||||||||
|
|
|
683 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
|
|
|
684 </div>
|
|
|
685
|
|
|
686 </div>
|
|
|
687
|
|
|
688 </div></div>
|
|
|
689 </section>
|
|
|
690 </section>
|
|
|
691
|
|
|
692 <section class=match id=match2>
|
|
|
693
|
|
114
|
694 <h2>Nucleotide Sequence (20 letters)</h2>
|
|
106
|
695
|
|
|
696 <section class=header>
|
|
|
697
|
|
|
698 <table class=headerdata>
|
|
114
|
699 <tr><td class=param>Query number:</td><td>2</td></tr>
|
|
|
700 <tr><td class=param>Query ID:</td><td>Query_2</td></tr>
|
|
|
701 <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
702 <tr><td class=param>Length:</td><td>20</td></tr>
|
|
106
|
703 </table>
|
|
|
704
|
|
|
705 </section>
|
|
|
706
|
|
|
707 <section>
|
|
114
|
708 <h3>No Hits</h3>
|
|
106
|
709 <div class=grey>
|
|
|
710 <table class=headerdata>
|
|
|
711 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
712 </table>
|
|
|
713 </div>
|
|
|
714 </section>
|
|
|
715 </section>
|
|
|
716
|
|
|
717 <section class=match id=match3>
|
|
|
718
|
|
114
|
719 <h2>Nucleotide Sequence (20 letters)</h2>
|
|
106
|
720
|
|
|
721 <section class=header>
|
|
|
722
|
|
|
723 <table class=headerdata>
|
|
114
|
724 <tr><td class=param>Query number:</td><td>3</td></tr>
|
|
|
725 <tr><td class=param>Query ID:</td><td>Query_3</td></tr>
|
|
|
726 <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
727 <tr><td class=param>Length:</td><td>20</td></tr>
|
|
106
|
728 </table>
|
|
|
729
|
|
|
730 </section>
|
|
|
731
|
|
|
732
|
|
|
733 <section class=graphics>
|
|
114
|
734 <h3>Graphic Summary</h3>
|
|
106
|
735
|
|
|
736 <div class=grey>
|
|
114
|
737 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
|
|
106
|
738
|
|
|
739 <div class=defline id=defline3>
|
|
|
740 Mouse-over to show defline and scores, click to show alignments
|
|
|
741 </div>
|
|
|
742
|
|
|
743 <div class=graphic>
|
|
114
|
744 <h5 class=darkHeader>Color key for alignment scores</h5>
|
|
106
|
745 <div class=legend><div class=graphicrow>
|
|
|
746 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
747 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
748 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
749 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
750 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
751 </div></div>
|
|
|
752 <div style="clear: left"></div>
|
|
|
753
|
|
|
754 <div class=tablewrapper>
|
|
|
755
|
|
|
756 <div class=scale>
|
|
|
757 <div>query:</div>
|
|
|
758 <div class=graphicrow>
|
|
|
759 <div>
|
|
|
760 <div class=graphicitem style="width: 10%">
|
|
|
761 <div>2</div>
|
|
|
762 </div>
|
|
|
763 <div class=graphicitem style="width: 10%">
|
|
|
764 <div>4</div>
|
|
|
765 </div>
|
|
|
766 <div class=graphicitem style="width: 10%">
|
|
|
767 <div>6</div>
|
|
|
768 </div>
|
|
|
769 <div class=graphicitem style="width: 10%">
|
|
|
770 <div>8</div>
|
|
|
771 </div>
|
|
|
772 <div class=graphicitem style="width: 10%">
|
|
|
773 <div>10</div>
|
|
|
774 </div>
|
|
|
775 <div class=graphicitem style="width: 10%">
|
|
|
776 <div>12</div>
|
|
|
777 </div>
|
|
|
778 <div class=graphicitem style="width: 10%">
|
|
|
779 <div>14</div>
|
|
|
780 </div>
|
|
|
781 <div class=graphicitem style="width: 10%">
|
|
|
782 <div>16</div>
|
|
|
783 </div>
|
|
|
784 <div class=graphicitem style="width: 10%">
|
|
|
785 <div>18</div>
|
|
|
786 </div>
|
|
|
787 <div class=graphicitem style="width: 10%">
|
|
|
788 <div>20</div>
|
|
|
789 </div>
|
|
|
790 </div>
|
|
|
791 </div>
|
|
|
792 <div style="clear: left"></div>
|
|
|
793 </div>
|
|
|
794
|
|
|
795 <a class=matchresult
|
|
|
796 href="#hit3-1"
|
|
|
797 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
798 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
799 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
800 <div class="matchrow graphicrow">
|
|
|
801 <div class="matchitem graphicitem"
|
|
|
802 style="background-color: black; width: 100%"></div>
|
|
|
803 </div>
|
|
|
804 </a>
|
|
|
805
|
|
|
806 <a class=matchresult
|
|
|
807 href="#hit3-2"
|
|
|
808 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
809 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
810 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
811 <div class="matchrow graphicrow">
|
|
|
812 <div class="matchitem graphicitem"
|
|
|
813 style="background-color: black; width: 100%"></div>
|
|
|
814 </div>
|
|
|
815 </a>
|
|
|
816
|
|
|
817 <a class=matchresult
|
|
|
818 href="#hit3-3"
|
|
|
819 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
|
|
|
820 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
821 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
|
|
|
822 <div class="matchrow graphicrow">
|
|
|
823 <div class="matchitem graphicitem"
|
|
|
824 style="background-color: transparent; width: 15%"></div>
|
|
|
825 <div class="matchitem graphicitem"
|
|
|
826 style="background-color: black; width: 85%"></div>
|
|
|
827 </div>
|
|
|
828 </a>
|
|
|
829
|
|
|
830 </div>
|
|
|
831 </div>
|
|
|
832 </div>
|
|
|
833 </section>
|
|
|
834
|
|
|
835
|
|
|
836
|
|
|
837 <section class=descriptions>
|
|
114
|
838 <h3>Descriptions</h3>
|
|
106
|
839
|
|
|
840 <div class=grey><div class=white>
|
|
114
|
841 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
|
|
106
|
842
|
|
|
843 <table class=descriptiontable>
|
|
|
844 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
845 <tr>
|
|
|
846 <th>Description</th>
|
|
|
847 <th>Max score</th>
|
|
|
848 <th>Total score</th>
|
|
|
849 <th>Query cover</th>
|
|
|
850 <th>E value</th>
|
|
|
851 <th>Ident</th>
|
|
|
852 <th>Accession</th>
|
|
|
853 </tr>
|
|
|
854 <tr>
|
|
|
855 <td><div><a href="#hit3-1"
|
|
|
856 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
857 id="description3-1">
|
|
|
858 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
859 </a></div></td>
|
|
|
860 <td>40.1</td>
|
|
|
861 <td>40.1</td>
|
|
|
862 <td>100%</td>
|
|
|
863 <td>1.513e-07</td>
|
|
|
864 <td>100%</td>
|
|
|
865 <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
|
|
|
866 </tr>
|
|
|
867 <tr>
|
|
|
868 <td><div><a href="#hit3-2"
|
|
|
869 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
870 id="description3-2">
|
|
|
871 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
872 </a></div></td>
|
|
|
873 <td>40.1</td>
|
|
|
874 <td>40.1</td>
|
|
|
875 <td>100%</td>
|
|
|
876 <td>1.513e-07</td>
|
|
|
877 <td>100%</td>
|
|
|
878 <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
|
|
|
879 </tr>
|
|
|
880 <tr>
|
|
|
881 <td><div><a href="#hit3-3"
|
|
|
882 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"
|
|
|
883 id="description3-3">
|
|
|
884 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000
|
|
|
885 </a></div></td>
|
|
|
886 <td>34.2</td>
|
|
|
887 <td>34.2</td>
|
|
|
888 <td>85%</td>
|
|
|
889 <td>9.334e-06</td>
|
|
|
890 <td>100%</td>
|
|
|
891 <td><a href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
|
|
|
892 </tr>
|
|
|
893 </table>
|
|
|
894
|
|
|
895 </div></div>
|
|
|
896 </section>
|
|
|
897
|
|
|
898
|
|
|
899
|
|
|
900 <section class=alignments>
|
|
114
|
901 <h3>Alignments</h3>
|
|
106
|
902
|
|
|
903 <div class=grey><div class=white>
|
|
|
904 <div class=alignment id=hit3-1>
|
|
|
905
|
|
|
906 <div class=linkheader>
|
|
|
907 <div class=right><a href="#description3-1">Descriptions</a></div>
|
|
|
908 <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
|
|
|
909 </div>
|
|
|
910
|
|
|
911 <div class=title>
|
|
|
912 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
913 <p class=titleinfo>
|
|
|
914 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
|
|
|
915 <span class=b>Length:</span> 2457
|
|
|
916 <span class=b>Number of Matches:</span> 1
|
|
|
917 </p>
|
|
|
918 </div>
|
|
|
919
|
|
|
920
|
|
|
921 <div class=hotspot id=hotspot3-1-1>
|
|
|
922 <p class=range>
|
|
|
923 <span class=range>Range 1: 2143 to 2162</span>
|
|
|
924 </p>
|
|
|
925
|
|
|
926 <table class=hotspotstable>
|
|
|
927 <tr>
|
|
|
928 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
929 </tr>
|
|
|
930 <tr>
|
|
|
931 <td>40.1 bits(20)</td>
|
|
|
932 <td>0.0</td>
|
|
|
933 <td>20/20(100%)</td>
|
|
|
934 <td>0/20(0%)</td>
|
|
|
935 <td>Plus/Plus</td>
|
|
|
936 </tr>
|
|
|
937 </table>
|
|
|
938
|
|
|
939 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
940 ||||||||||||||||||||
|
|
|
941 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
|
|
|
942 </div>
|
|
|
943
|
|
|
944 </div>
|
|
|
945
|
|
|
946 <div class=alignment id=hit3-2>
|
|
|
947
|
|
|
948 <div class=linkheader>
|
|
|
949 <div class=right><a href="#description3-2">Descriptions</a></div>
|
|
|
950 <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
|
|
|
951 </div>
|
|
|
952
|
|
|
953 <div class=title>
|
|
|
954 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
955 <p class=titleinfo>
|
|
|
956 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
|
|
|
957 <span class=b>Length:</span> 323
|
|
|
958 <span class=b>Number of Matches:</span> 1
|
|
|
959 </p>
|
|
|
960 </div>
|
|
|
961
|
|
|
962
|
|
|
963 <div class=hotspot id=hotspot3-2-1>
|
|
|
964 <p class=range>
|
|
|
965 <span class=range>Range 1: 224 to 243</span>
|
|
|
966 </p>
|
|
|
967
|
|
|
968 <table class=hotspotstable>
|
|
|
969 <tr>
|
|
|
970 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
971 </tr>
|
|
|
972 <tr>
|
|
|
973 <td>40.1 bits(20)</td>
|
|
|
974 <td>0.0</td>
|
|
|
975 <td>20/20(100%)</td>
|
|
|
976 <td>0/20(0%)</td>
|
|
|
977 <td>Plus/Plus</td>
|
|
|
978 </tr>
|
|
|
979 </table>
|
|
|
980
|
|
|
981 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
982 ||||||||||||||||||||
|
|
|
983 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
|
|
|
984 </div>
|
|
|
985
|
|
|
986 </div>
|
|
|
987
|
|
|
988 <div class=alignment id=hit3-3>
|
|
|
989
|
|
|
990 <div class=linkheader>
|
|
|
991 <div class=right><a href="#description3-3">Descriptions</a></div>
|
|
|
992 <a class="linkheader" href="http://example.com/example-genebank/AJ308515.1/">Gene Bank</a>
|
|
|
993 </div>
|
|
|
994
|
|
|
995 <div class=title>
|
|
|
996 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p>
|
|
|
997 <p class=titleinfo>
|
|
|
998 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
|
|
|
999 <span class=b>Length:</span> 1045
|
|
|
1000 <span class=b>Number of Matches:</span> 1
|
|
|
1001 </p>
|
|
|
1002 </div>
|
|
|
1003
|
|
|
1004
|
|
|
1005 <div class=hotspot id=hotspot3-3-1>
|
|
|
1006 <p class=range>
|
|
|
1007 <span class=range>Range 1: 2 to 18</span>
|
|
|
1008 </p>
|
|
|
1009
|
|
|
1010 <table class=hotspotstable>
|
|
|
1011 <tr>
|
|
|
1012 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1013 </tr>
|
|
|
1014 <tr>
|
|
|
1015 <td>34.2 bits(17)</td>
|
|
|
1016 <td>0.0</td>
|
|
|
1017 <td>17/17(100%)</td>
|
|
|
1018 <td>0/17(0%)</td>
|
|
|
1019 <td>Plus/Plus</td>
|
|
|
1020 </tr>
|
|
|
1021 </table>
|
|
|
1022
|
|
|
1023 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
|
|
|
1024 |||||||||||||||||
|
|
|
1025 Subject 2 GCGCGGTGTCATCTATG 18</pre>
|
|
|
1026 </div>
|
|
|
1027
|
|
|
1028 </div>
|
|
|
1029
|
|
|
1030 </div></div>
|
|
|
1031 </section>
|
|
|
1032 </section>
|
|
|
1033
|
|
|
1034 <section class=match id=match4>
|
|
|
1035
|
|
114
|
1036 <h2>Nucleotide Sequence (24 letters)</h2>
|
|
106
|
1037
|
|
|
1038 <section class=header>
|
|
|
1039
|
|
|
1040 <table class=headerdata>
|
|
114
|
1041 <tr><td class=param>Query number:</td><td>4</td></tr>
|
|
|
1042 <tr><td class=param>Query ID:</td><td>Query_4</td></tr>
|
|
|
1043 <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
|
|
|
1044 <tr><td class=param>Length:</td><td>24</td></tr>
|
|
106
|
1045 </table>
|
|
|
1046
|
|
|
1047 </section>
|
|
|
1048
|
|
|
1049 <section>
|
|
114
|
1050 <h3>No Hits</h3>
|
|
106
|
1051 <div class=grey>
|
|
|
1052 <table class=headerdata>
|
|
|
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1054 </table>
|
|
|
1055 </div>
|
|
|
1056 </section>
|
|
|
1057 </section>
|
|
|
1058
|
|
|
1059 <section class=match id=match5>
|
|
|
1060
|
|
114
|
1061 <h2>Nucleotide Sequence (20 letters)</h2>
|
|
106
|
1062
|
|
|
1063 <section class=header>
|
|
|
1064
|
|
|
1065 <table class=headerdata>
|
|
114
|
1066 <tr><td class=param>Query number:</td><td>5</td></tr>
|
|
|
1067 <tr><td class=param>Query ID:</td><td>Query_5</td></tr>
|
|
|
1068 <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
|
|
|
1069 <tr><td class=param>Length:</td><td>20</td></tr>
|
|
106
|
1070 </table>
|
|
|
1071
|
|
|
1072 </section>
|
|
|
1073
|
|
|
1074 <section>
|
|
114
|
1075 <h3>No Hits</h3>
|
|
106
|
1076 <div class=grey>
|
|
|
1077 <table class=headerdata>
|
|
|
1078 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1079 </table>
|
|
|
1080 </div>
|
|
|
1081 </section>
|
|
|
1082 </section>
|
|
|
1083
|
|
|
1084 <section class=match id=match6>
|
|
|
1085
|
|
114
|
1086 <h2>Nucleotide Sequence (25 letters)</h2>
|
|
106
|
1087
|
|
|
1088 <section class=header>
|
|
|
1089
|
|
|
1090 <table class=headerdata>
|
|
114
|
1091 <tr><td class=param>Query number:</td><td>6</td></tr>
|
|
|
1092 <tr><td class=param>Query ID:</td><td>Query_6</td></tr>
|
|
|
1093 <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
|
|
|
1094 <tr><td class=param>Length:</td><td>25</td></tr>
|
|
106
|
1095 </table>
|
|
|
1096
|
|
|
1097 </section>
|
|
|
1098
|
|
|
1099
|
|
|
1100 <section class=graphics>
|
|
114
|
1101 <h3>Graphic Summary</h3>
|
|
106
|
1102
|
|
|
1103 <div class=grey>
|
|
114
|
1104 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
|
|
106
|
1105
|
|
|
1106 <div class=defline id=defline6>
|
|
|
1107 Mouse-over to show defline and scores, click to show alignments
|
|
|
1108 </div>
|
|
|
1109
|
|
|
1110 <div class=graphic>
|
|
114
|
1111 <h5 class=darkHeader>Color key for alignment scores</h5>
|
|
106
|
1112 <div class=legend><div class=graphicrow>
|
|
|
1113 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1114 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1115 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1116 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1117 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1118 </div></div>
|
|
|
1119 <div style="clear: left"></div>
|
|
|
1120
|
|
|
1121 <div class=tablewrapper>
|
|
|
1122
|
|
|
1123 <div class=scale>
|
|
|
1124 <div>query:</div>
|
|
|
1125 <div class=graphicrow>
|
|
|
1126 <div>
|
|
|
1127 <div class=graphicitem style="width: 12%">
|
|
|
1128 <div>3</div>
|
|
|
1129 </div>
|
|
|
1130 <div class=graphicitem style="width: 12%">
|
|
|
1131 <div>6</div>
|
|
|
1132 </div>
|
|
|
1133 <div class=graphicitem style="width: 12%">
|
|
|
1134 <div>9</div>
|
|
|
1135 </div>
|
|
|
1136 <div class=graphicitem style="width: 12%">
|
|
|
1137 <div>12</div>
|
|
|
1138 </div>
|
|
|
1139 <div class=graphicitem style="width: 12%">
|
|
|
1140 <div>15</div>
|
|
|
1141 </div>
|
|
|
1142 <div class=graphicitem style="width: 12%">
|
|
|
1143 <div>18</div>
|
|
|
1144 </div>
|
|
|
1145 <div class=graphicitem style="width: 12%">
|
|
|
1146 <div>21</div>
|
|
|
1147 </div>
|
|
|
1148 <div class=graphicitem style="width: 12%">
|
|
|
1149 <div>24</div>
|
|
|
1150 </div>
|
|
|
1151 <div class=graphicitem style="width: 4%">
|
|
|
1152 <div>25</div>
|
|
|
1153 </div>
|
|
|
1154 </div>
|
|
|
1155 </div>
|
|
|
1156 <div style="clear: left"></div>
|
|
|
1157 </div>
|
|
|
1158
|
|
|
1159 <a class=matchresult
|
|
|
1160 href="#hit6-1"
|
|
|
1161 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
1162 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1163 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
1164 <div class="matchrow graphicrow">
|
|
|
1165 <div class="matchitem graphicitem"
|
|
|
1166 style="background-color: black; width: 88%"></div>
|
|
|
1167 <div class="matchitem graphicitem"
|
|
|
1168 style="background-color: transparent; width: 12%"></div>
|
|
|
1169 </div>
|
|
|
1170 </a>
|
|
|
1171
|
|
|
1172 <a class=matchresult
|
|
|
1173 href="#hit6-2"
|
|
|
1174 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
1175 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1176 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
1177 <div class="matchrow graphicrow">
|
|
|
1178 <div class="matchitem graphicitem"
|
|
|
1179 style="background-color: black; width: 88%"></div>
|
|
|
1180 <div class="matchitem graphicitem"
|
|
|
1181 style="background-color: transparent; width: 12%"></div>
|
|
|
1182 </div>
|
|
|
1183 </a>
|
|
|
1184
|
|
|
1185 </div>
|
|
|
1186 </div>
|
|
|
1187 </div>
|
|
|
1188 </section>
|
|
|
1189
|
|
|
1190
|
|
|
1191
|
|
|
1192 <section class=descriptions>
|
|
114
|
1193 <h3>Descriptions</h3>
|
|
106
|
1194
|
|
|
1195 <div class=grey><div class=white>
|
|
114
|
1196 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
|
|
106
|
1197
|
|
|
1198 <table class=descriptiontable>
|
|
|
1199 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1200 <tr>
|
|
|
1201 <th>Description</th>
|
|
|
1202 <th>Max score</th>
|
|
|
1203 <th>Total score</th>
|
|
|
1204 <th>Query cover</th>
|
|
|
1205 <th>E value</th>
|
|
|
1206 <th>Ident</th>
|
|
|
1207 <th>Accession</th>
|
|
|
1208 </tr>
|
|
|
1209 <tr>
|
|
|
1210 <td><div><a href="#hit6-1"
|
|
|
1211 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
1212 id="description6-1">
|
|
|
1213 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
1214 </a></div></td>
|
|
|
1215 <td>36.2</td>
|
|
|
1216 <td>36.2</td>
|
|
|
1217 <td>88%</td>
|
|
|
1218 <td>3.148e-06</td>
|
|
|
1219 <td>95%</td>
|
|
|
1220 <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
|
|
|
1221 </tr>
|
|
|
1222 <tr>
|
|
|
1223 <td><div><a href="#hit6-2"
|
|
|
1224 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
1225 id="description6-2">
|
|
|
1226 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
1227 </a></div></td>
|
|
|
1228 <td>36.2</td>
|
|
|
1229 <td>36.2</td>
|
|
|
1230 <td>88%</td>
|
|
|
1231 <td>3.148e-06</td>
|
|
|
1232 <td>95%</td>
|
|
|
1233 <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
|
|
|
1234 </tr>
|
|
|
1235 </table>
|
|
|
1236
|
|
|
1237 </div></div>
|
|
|
1238 </section>
|
|
|
1239
|
|
|
1240
|
|
|
1241
|
|
|
1242 <section class=alignments>
|
|
114
|
1243 <h3>Alignments</h3>
|
|
106
|
1244
|
|
|
1245 <div class=grey><div class=white>
|
|
|
1246 <div class=alignment id=hit6-1>
|
|
|
1247
|
|
|
1248 <div class=linkheader>
|
|
|
1249 <div class=right><a href="#description6-1">Descriptions</a></div>
|
|
|
1250 <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
|
|
|
1251 </div>
|
|
|
1252
|
|
|
1253 <div class=title>
|
|
|
1254 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
1255 <p class=titleinfo>
|
|
|
1256 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
|
|
|
1257 <span class=b>Length:</span> 4983
|
|
|
1258 <span class=b>Number of Matches:</span> 1
|
|
|
1259 </p>
|
|
|
1260 </div>
|
|
|
1261
|
|
|
1262
|
|
|
1263 <div class=hotspot id=hotspot6-1-1>
|
|
|
1264 <p class=range>
|
|
|
1265 <span class=range>Range 1: 2344 to 2365</span>
|
|
|
1266 </p>
|
|
|
1267
|
|
|
1268 <table class=hotspotstable>
|
|
|
1269 <tr>
|
|
|
1270 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1271 </tr>
|
|
|
1272 <tr>
|
|
|
1273 <td>36.2 bits(18)</td>
|
|
|
1274 <td>0.0</td>
|
|
|
1275 <td>21/22(95%)</td>
|
|
|
1276 <td>0/22(0%)</td>
|
|
|
1277 <td>Plus/Plus</td>
|
|
|
1278 </tr>
|
|
|
1279 </table>
|
|
|
1280
|
|
|
1281 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
|
|
|
1282 |||||||||||||| |||||||
|
|
|
1283 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre>
|
|
|
1284 </div>
|
|
|
1285
|
|
|
1286 </div>
|
|
|
1287
|
|
|
1288 <div class=alignment id=hit6-2>
|
|
|
1289
|
|
|
1290 <div class=linkheader>
|
|
|
1291 <div class=right><a href="#description6-2">Descriptions</a></div>
|
|
|
1292 <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
|
|
|
1293 </div>
|
|
|
1294
|
|
|
1295 <div class=title>
|
|
|
1296 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
1297 <p class=titleinfo>
|
|
|
1298 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
|
|
|
1299 <span class=b>Length:</span> 4180
|
|
|
1300 <span class=b>Number of Matches:</span> 1
|
|
|
1301 </p>
|
|
|
1302 </div>
|
|
|
1303
|
|
|
1304
|
|
|
1305 <div class=hotspot id=hotspot6-2-1>
|
|
|
1306 <p class=range>
|
|
|
1307 <span class=range>Range 1: 1541 to 1562</span>
|
|
|
1308 </p>
|
|
|
1309
|
|
|
1310 <table class=hotspotstable>
|
|
|
1311 <tr>
|
|
|
1312 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1313 </tr>
|
|
|
1314 <tr>
|
|
|
1315 <td>36.2 bits(18)</td>
|
|
|
1316 <td>0.0</td>
|
|
|
1317 <td>21/22(95%)</td>
|
|
|
1318 <td>0/22(0%)</td>
|
|
|
1319 <td>Plus/Plus</td>
|
|
|
1320 </tr>
|
|
|
1321 </table>
|
|
|
1322
|
|
|
1323 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
|
|
|
1324 |||||||||||||| |||||||
|
|
|
1325 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre>
|
|
|
1326 </div>
|
|
|
1327
|
|
|
1328 </div>
|
|
|
1329
|
|
|
1330 </div></div>
|
|
|
1331 </section>
|
|
|
1332 </section>
|
|
|
1333
|
|
|
1334 <section class=match id=match7>
|
|
|
1335
|
|
114
|
1336 <h2>Nucleotide Sequence (74 letters)</h2>
|
|
106
|
1337
|
|
|
1338 <section class=header>
|
|
|
1339
|
|
|
1340 <table class=headerdata>
|
|
114
|
1341 <tr><td class=param>Query number:</td><td>7</td></tr>
|
|
|
1342 <tr><td class=param>Query ID:</td><td>Query_7</td></tr>
|
|
|
1343 <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
|
|
|
1344 <tr><td class=param>Length:</td><td>74</td></tr>
|
|
106
|
1345 </table>
|
|
|
1346
|
|
|
1347 </section>
|
|
|
1348
|
|
|
1349
|
|
|
1350 <section class=graphics>
|
|
114
|
1351 <h3>Graphic Summary</h3>
|
|
106
|
1352
|
|
|
1353 <div class=grey>
|
|
114
|
1354 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
|
|
106
|
1355
|
|
|
1356 <div class=defline id=defline7>
|
|
|
1357 Mouse-over to show defline and scores, click to show alignments
|
|
|
1358 </div>
|
|
|
1359
|
|
|
1360 <div class=graphic>
|
|
114
|
1361 <h5 class=darkHeader>Color key for alignment scores</h5>
|
|
106
|
1362 <div class=legend><div class=graphicrow>
|
|
|
1363 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1364 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1365 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1366 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1367 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1368 </div></div>
|
|
|
1369 <div style="clear: left"></div>
|
|
|
1370
|
|
|
1371 <div class=tablewrapper>
|
|
|
1372
|
|
|
1373 <div class=scale>
|
|
|
1374 <div>query:</div>
|
|
|
1375 <div class=graphicrow>
|
|
|
1376 <div>
|
|
|
1377 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1378 <div>8</div>
|
|
|
1379 </div>
|
|
|
1380 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1381 <div>16</div>
|
|
|
1382 </div>
|
|
|
1383 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1384 <div>24</div>
|
|
|
1385 </div>
|
|
|
1386 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1387 <div>32</div>
|
|
|
1388 </div>
|
|
|
1389 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1390 <div>40</div>
|
|
|
1391 </div>
|
|
|
1392 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1393 <div>48</div>
|
|
|
1394 </div>
|
|
|
1395 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1396 <div>56</div>
|
|
|
1397 </div>
|
|
|
1398 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1399 <div>64</div>
|
|
|
1400 </div>
|
|
|
1401 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
1402 <div>72</div>
|
|
|
1403 </div>
|
|
|
1404 <div class=graphicitem style="width: 2.7027027027%">
|
|
|
1405 <div> </div>
|
|
|
1406 <div class=lastlabel>74</div>
|
|
|
1407 </div>
|
|
|
1408 </div>
|
|
|
1409 </div>
|
|
|
1410 <div style="clear: left"></div>
|
|
|
1411 </div>
|
|
|
1412
|
|
|
1413 <a class=matchresult
|
|
|
1414 href="#hit7-1"
|
|
|
1415 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
1416 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1417 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
1418 <div class="matchrow graphicrow">
|
|
|
1419 <div class="matchitem graphicitem"
|
|
|
1420 style="background-color: green; width: 100%"></div>
|
|
|
1421 </div>
|
|
|
1422 </a>
|
|
|
1423
|
|
|
1424 <a class=matchresult
|
|
|
1425 href="#hit7-2"
|
|
|
1426 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
1427 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1428 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
1429 <div class="matchrow graphicrow">
|
|
|
1430 <div class="matchitem graphicitem"
|
|
|
1431 style="background-color: green; width: 100%"></div>
|
|
|
1432 </div>
|
|
|
1433 </a>
|
|
|
1434
|
|
|
1435 </div>
|
|
|
1436 </div>
|
|
|
1437 </div>
|
|
|
1438 </section>
|
|
|
1439
|
|
|
1440
|
|
|
1441
|
|
|
1442 <section class=descriptions>
|
|
114
|
1443 <h3>Descriptions</h3>
|
|
106
|
1444
|
|
|
1445 <div class=grey><div class=white>
|
|
114
|
1446 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
|
|
106
|
1447
|
|
|
1448 <table class=descriptiontable>
|
|
|
1449 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1450 <tr>
|
|
|
1451 <th>Description</th>
|
|
|
1452 <th>Max score</th>
|
|
|
1453 <th>Total score</th>
|
|
|
1454 <th>Query cover</th>
|
|
|
1455 <th>E value</th>
|
|
|
1456 <th>Ident</th>
|
|
|
1457 <th>Accession</th>
|
|
|
1458 </tr>
|
|
|
1459 <tr>
|
|
|
1460 <td><div><a href="#hit7-1"
|
|
|
1461 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
1462 id="description7-1">
|
|
|
1463 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
1464 </a></div></td>
|
|
|
1465 <td>67.9</td>
|
|
|
1466 <td>67.9</td>
|
|
|
1467 <td>100%</td>
|
|
|
1468 <td>3.564e-15</td>
|
|
|
1469 <td>86%</td>
|
|
|
1470 <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
|
|
|
1471 </tr>
|
|
|
1472 <tr>
|
|
|
1473 <td><div><a href="#hit7-2"
|
|
|
1474 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
1475 id="description7-2">
|
|
|
1476 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
1477 </a></div></td>
|
|
|
1478 <td>67.9</td>
|
|
|
1479 <td>67.9</td>
|
|
|
1480 <td>100%</td>
|
|
|
1481 <td>3.564e-15</td>
|
|
|
1482 <td>86%</td>
|
|
|
1483 <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
|
|
|
1484 </tr>
|
|
|
1485 </table>
|
|
|
1486
|
|
|
1487 </div></div>
|
|
|
1488 </section>
|
|
|
1489
|
|
|
1490
|
|
|
1491
|
|
|
1492 <section class=alignments>
|
|
114
|
1493 <h3>Alignments</h3>
|
|
106
|
1494
|
|
|
1495 <div class=grey><div class=white>
|
|
|
1496 <div class=alignment id=hit7-1>
|
|
|
1497
|
|
|
1498 <div class=linkheader>
|
|
|
1499 <div class=right><a href="#description7-1">Descriptions</a></div>
|
|
|
1500 <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
|
|
|
1501 </div>
|
|
|
1502
|
|
|
1503 <div class=title>
|
|
|
1504 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
1505 <p class=titleinfo>
|
|
|
1506 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
|
|
|
1507 <span class=b>Length:</span> 4983
|
|
|
1508 <span class=b>Number of Matches:</span> 1
|
|
|
1509 </p>
|
|
|
1510 </div>
|
|
|
1511
|
|
|
1512
|
|
|
1513 <div class=hotspot id=hotspot7-1-1>
|
|
|
1514 <p class=range>
|
|
|
1515 <span class=range>Range 1: 2319 to 2392</span>
|
|
|
1516 </p>
|
|
|
1517
|
|
|
1518 <table class=hotspotstable>
|
|
|
1519 <tr>
|
|
|
1520 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1521 </tr>
|
|
|
1522 <tr>
|
|
|
1523 <td>67.9 bits(34)</td>
|
|
|
1524 <td>0.0</td>
|
|
|
1525 <td>64/74(86%)</td>
|
|
|
1526 <td>0/74(0%)</td>
|
|
|
1527 <td>Plus/Plus</td>
|
|
|
1528 </tr>
|
|
|
1529 </table>
|
|
|
1530
|
|
|
1531 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
|
|
|
1532 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
|
|
|
1533 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 2378</pre>
|
|
|
1534 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
|
|
|
1535 ||||| ||||||||
|
|
|
1536 Subject 2379 TTCGCCGTCCAGAA 2392</pre>
|
|
|
1537 </div>
|
|
|
1538
|
|
|
1539 </div>
|
|
|
1540
|
|
|
1541 <div class=alignment id=hit7-2>
|
|
|
1542
|
|
|
1543 <div class=linkheader>
|
|
|
1544 <div class=right><a href="#description7-2">Descriptions</a></div>
|
|
|
1545 <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
|
|
|
1546 </div>
|
|
|
1547
|
|
|
1548 <div class=title>
|
|
|
1549 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
1550 <p class=titleinfo>
|
|
|
1551 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
|
|
|
1552 <span class=b>Length:</span> 4180
|
|
|
1553 <span class=b>Number of Matches:</span> 1
|
|
|
1554 </p>
|
|
|
1555 </div>
|
|
|
1556
|
|
|
1557
|
|
|
1558 <div class=hotspot id=hotspot7-2-1>
|
|
|
1559 <p class=range>
|
|
|
1560 <span class=range>Range 1: 1589 to 1516</span>
|
|
|
1561 </p>
|
|
|
1562
|
|
|
1563 <table class=hotspotstable>
|
|
|
1564 <tr>
|
|
|
1565 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1566 </tr>
|
|
|
1567 <tr>
|
|
|
1568 <td>67.9 bits(34)</td>
|
|
|
1569 <td>0.0</td>
|
|
|
1570 <td>64/74(86%)</td>
|
|
|
1571 <td>0/74(0%)</td>
|
|
|
1572 <td>Plus/Minus</td>
|
|
|
1573 </tr>
|
|
|
1574 </table>
|
|
|
1575
|
|
|
1576 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
|
|
|
1577 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
|
|
|
1578 Subject 1589 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 1530</pre>
|
|
|
1579 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
|
|
|
1580 ||||| ||||||||
|
|
|
1581 Subject 1529 TTCGCCGTCCAGAA 1516</pre>
|
|
|
1582 </div>
|
|
|
1583
|
|
|
1584 </div>
|
|
|
1585
|
|
|
1586 </div></div>
|
|
|
1587 </section>
|
|
|
1588 </section>
|
|
|
1589
|
|
|
1590 </div>
|
|
|
1591
|
|
|
1592 <footer>
|
|
|
1593 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>.
|
|
|
1594 </footer>
|
|
|
1595 </body>
|
|
|
1596 </html>
|
|
|
1597
|
