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annotate visualise.html.jinja @ 7:9e7927673089

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intermediate commit before converting some tables to divs
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 08 May 2014 16:51:52 +0200
parents d20ce91e1297
children beb83da5a6b7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5
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6 <title>Blast output</title>
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7
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8 <style>
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9 body {
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10 color: #33333;
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11 font-family: Verdana,Arial,Sans-Serif;
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12 }
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14 #content {
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15 margin: 0 2em;
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16 padding: 0.5em;
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17 border: 1px solid #888888;
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18 background-color: #d3dff5;
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19 }
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20
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21 h1, h2, h3, h4, h5, h6 {
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22 color: #2A6979;
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23 font-family: arial,verdana,sans-serif;
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24 letter-spacing: -1px;
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25 margin: 1.2em 0 0.3em;
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26 }
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28 h1 {
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29 border-bottom: 1px solid #CCCCCC;
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30 font-size: 150%;
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31 padding-bottom: 0.1em;
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32 }
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33
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34 h2 {
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35 font-size: 120%;
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36 font-weight: bold;
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37 }
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38
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39 h4.blackHeader {
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40 color: black;
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41 letter-spacing: 0;
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42 font-style: bold;
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43 }
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44
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45 .headerdata {
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46 font-size: 90%;
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47 }
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48 .headerdata .param {
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49 font-weight: bold;
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50 text-align: right;
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51 padding: 0 1em;
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52 }
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53
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54 .grey {
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55 background-color: #eeeeee;
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56 border: 1px solid #cccccc;
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57 padding: 1em;
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58 }
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59
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60 .white {
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61 background-color: white;
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62 border: 1px solid #cccccc;
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63 padding: 1em;
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64 }
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65
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66 .graphic {
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67 background-color: white;
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68 border: 2px solid black;
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69 padding: .5em;
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70 align: center;
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71 margin: auto;
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72 }
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73
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74 #graphics .grey {
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75 text-align: center;
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76 }
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78 .centered, #defline, div.legendwrapper, table.legend, div.tablewrapper {
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79 align: center;
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80 margin-left: auto;
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81 margin-right: auto;
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82 }
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83
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84 #defline {
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85 background-color: white;
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86 border: 1px solid black;
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87 margin: .5em auto;
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88 padding-left: .2em;
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89 padding-right: .2em;
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90 max-width: 50em;
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91 text-align: left;
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92 height: 4em;
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93 overflow-y: hidden;
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94 }
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95
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96 div.legendwrapper {
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97 max-width: 40em;
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98 }
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99
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100 table.legend {
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101 color: white;
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102 font-weight: bold;
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103 width: 100%;
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104 border-spacing: 0;
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105 }
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106 table.legend td {
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107 width: 20%;
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108 padding: 0;
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109 margin: 0;
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110 border: none;
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111 }
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112
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113 div.tablewrapper {
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114 width: 50%;
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115 min-width: 60em;
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116 }
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117
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118 /* For small widths we give the graphic 100% */
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119 @media (max-width: 70em) {
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120 div.tablewrapper {
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121 width: 100%;
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122 min-width: 0px;
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123 }
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124 }
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125
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126 .scale {
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127 width: 100%;
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128 margin: .5em 0;
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129 font-weight: bold;
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130 }
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131 .scale div {
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132 color: red;
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133 text-align: left;
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134 }
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135 .scale table {
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136 width: 100%;
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137 height: 1.3em;
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138 margin-top: 0;
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139 color: white;
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140 table-layout: fixed;
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141 border-collapse: collapse;
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142 }
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143 .scale td {
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144 margin 0;
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145 padding 0;
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146 }
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147 .scale td div {
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148 margin: 1px 0;
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149 text-align: right;
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150 background-color: red;
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151 color: white;
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152 }
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154 table.matchresult {
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155 width: 100%;
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156 margin-top: 3px;
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157 margin-bottom: 0;
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158 border-collapse: collapse;
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159 }
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160 table.matchresult, table.matchresult tr, table.matchresult td, a.matchlink {
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161 height: 3px;
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162 margin-left: 0;
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163 margin-right: 0;
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164 padding-left: 0;
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165 padding-right: 0;
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166 }
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167 a.matchlink {
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168 display: block;
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169 }
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170
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171 table.descriptiontable {
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172 width: 100%;
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173 }
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174 table.descriptiontable td {
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175 overflow: hidden;
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176 white-space: nowrap;
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177 }
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178 table.descriptiontable td div {
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179 display: inline-block;
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180 overflow: hidden;
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181 max-height: 1.4em;
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182 white-space: nowrap;
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183 }
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184
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185 </style>
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186
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187
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188 </head>
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189
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190 <body>
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191 <div id=content>
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192 <h1>Nucleotide Sequence ({{length}} letters)</h1>
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193
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194 <div id=header>
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195
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196 <table class=headerdata>
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197 {% for param, value in params %}
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198 <tr><td class=param>{{param}}</td><td>{{value}}</td></tr>
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199 {% endfor %}
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200 </table>
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201
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202 </div>
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203
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204 <div id=graphics>
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205 <h2>Graphic Summary</h2>
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206
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207 <div class=grey>
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208 <h3 class=centered>Distribution of {{hits|length}} Blast Hits on the Query Sequence</h3>
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209
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210 <div id=defline>Mouse-over to show defline and scores, click to show alignments</div>
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211
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212 <div class=graphic>
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213 <h4 class=blackHeader>Color key for alignment scores</h4>
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214 <div class=legendwrapper><table class=legend><tr>
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215 <td style="background-color: {{colors[0]}}">&lt;40</td>
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216 <td style="background-color: {{colors[1]}}">40-50</td>
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217 <td style="background-color: {{colors[2]}}">50-80</td>
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218 <td style="background-color: {{colors[3]}}">80-200</td>
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219 <td style="background-color: {{colors[4]}}">200&le;</td>
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220 </tr></table></div>
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221
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222 <div class=tablewrapper>
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223
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224 <div class=scale>
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225 <div>query:</div>
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226 <table><tr>
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227 {% for s in queryscale %}
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228 <td width={{s.width|safe}}%><div>{{s.label|safe}}</div></td>
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229 {% endfor %}
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230 </tr></table>
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231 </div>
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232
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233 {% for line in match_colors %}
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234 <a href="{{line.link}}"
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235 onmouseover='document.getElementById("defline").innerHTML="{{line.defline}}"'
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236 onmouseout='document.getElementById("defline").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
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237 title="{{line.defline}}">
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238 <table class=matchresult><tr>
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239 {% for match in line.colors %}
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240 <td width={{match[0]}}% style="background-color: {{match[1]}}" />
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241 {% endfor %}
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242 </tr></table>
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243 </a>
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244
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245 {% endfor %}
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246 </div>
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247 </div>
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248 </div>
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249 </div>
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250
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251 <div id=descriptions>
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252 <h2>Descriptions</h2>
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253
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254 <div class=grey><div class=white>
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255 <h4 class=blackHeader>Sequences producing significant alignments:</h4>
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256 <table class=descriptiontable>
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257 <tr>
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258 <th>Description</th>
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259 <th>Max score</th>
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260 <th>Total score</th>
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261 <th>Query cover</th>
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262 <th>E value</th>
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263 <th>Ident</th>
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264 <th>Accession</th>
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265 </tr>
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266 {% for hit in hit_info %}
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267 <tr>
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268 <td><div>{{hit.description}}</div></td>
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269 <td>{{hit.maxscore}}</td>
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270 <td>{{hit.totalscore}}</td>
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271 <td>{{hit.cover}}</td>
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272 <td>{{hit.e_value}}</td>
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273 <td>{{hit.ident}}</td>
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274 <td>{{hit.accession}}</td>
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275 </tr>
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276 {% endfor %}
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277 </table>
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278
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279 </div></div>
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280
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281 </div>
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282
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283 </div>
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284 </body>
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285 </html>
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286