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comparison test-data/blast xml example4b.html @ 114:4f0ed3b5ae46

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update test results
author Jan Kanis <jan.code@jankanis.nl>
date Wed, 09 Jul 2014 15:20:38 +0200
parents ed71448ee154
children 0c2a03f9740b
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113:5d3840a1635e 114:4f0ed3b5ae46
38 letter-spacing: -1px; 38 letter-spacing: -1px;
39 margin: 1.2em 0 0.3em; 39 margin: 1.2em 0 0.3em;
40 } 40 }
41 41
42 h1 { 42 h1 {
43 font-size: 200%;
44 }
45
46 h2 {
47 font-size: 150%;
48 }
49
50 h1, h2 {
43 border-bottom: 1px solid #CCCCCC; 51 border-bottom: 1px solid #CCCCCC;
44 font-size: 150%;
45 padding-bottom: 0.1em; 52 padding-bottom: 0.1em;
46 } 53 }
47 54
48 h2 { 55 h3 {
49 font-size: 120%; 56 font-size: 120%;
50 font-weight: bold; 57 font-weight: bold;
51 } 58 }
52 59
53 h4.darkHeader { 60 h5.darkHeader {
54 color: #4D4D4D; 61 color: #4D4D4D;
55 letter-spacing: 0; 62 letter-spacing: 0;
56 font-weight: bold; 63 font-weight: bold;
64 font-size: 108%;
57 } 65 }
58 66
59 #nodata { 67 #nodata {
60 font-weight: bold; 68 font-weight: bold;
61 } 69 }
383 </b></font></td></tr></table> 391 </b></font></td></tr></table>
384 </div> 392 </div>
385 393
386 <div id=content> 394 <div id=content>
387 395
396 <section class=header>
397
398 <h1>Nucleotide Blast results</h1>
399
400 <table class=headerdata>
401 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
402 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
403 </table>
404
405 </section>
406
388 407
389 <section class=index> 408 <section class=index>
390 <h1>Queries</h1> 409 <h2>Queries</h2>
391 410
392 <div class=indexentry><a href="#match1"> 411 <div class=indexentry><a href="#match1">
393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) 412 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
394 (20 letters, 2 hits) 413 (20 letters, 2 hits)
395 </a></div> 414 </a></div>
421 </section> 440 </section>
422 441
423 442
424 <section class=match id=match1> 443 <section class=match id=match1>
425 444
426 <h1>Nucleotide Sequence (20 letters)</h1> 445 <h2>Nucleotide Sequence (20 letters)</h2>
427 446
428 <section class=header> 447 <section class=header>
429 448
430 <table class=headerdata> 449 <table class=headerdata>
450 <tr><td class=param>Query number:</td><td>1</td></tr>
431 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 451 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
432 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 452 <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
433 <tr><td class=param>Query length:</td><td>20</td></tr> 453 <tr><td class=param>Length:</td><td>20</td></tr>
434 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
435 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
436 </table> 454 </table>
437 455
438 </section> 456 </section>
439 457
440 458
441 <section class=graphics> 459 <section class=graphics>
442 <h2>Graphic Summary</h2> 460 <h3>Graphic Summary</h3>
443 461
444 <div class=grey> 462 <div class=grey>
445 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> 463 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
446 464
447 <div class=defline id=defline1> 465 <div class=defline id=defline1>
448 Mouse-over to show defline and scores, click to show alignments 466 Mouse-over to show defline and scores, click to show alignments
449 </div> 467 </div>
450 468
451 <div class=graphic> 469 <div class=graphic>
452 <h4 class=darkHeader>Color key for alignment scores</h4> 470 <h5 class=darkHeader>Color key for alignment scores</h5>
453 <div class=legend><div class=graphicrow> 471 <div class=legend><div class=graphicrow>
454 <div class=graphicitem style="background-color: black">&lt;40</div> 472 <div class=graphicitem style="background-color: black">&lt;40</div>
455 <div class=graphicitem style="background-color: blue">40–50</div> 473 <div class=graphicitem style="background-color: blue">40–50</div>
456 <div class=graphicitem style="background-color: green">50–80</div> 474 <div class=graphicitem style="background-color: green">50–80</div>
457 <div class=graphicitem style="background-color: magenta">80–200</div> 475 <div class=graphicitem style="background-color: magenta">80–200</div>
528 </section> 546 </section>
529 547
530 548
531 549
532 <section class=descriptions> 550 <section class=descriptions>
533 <h2>Descriptions</h2> 551 <h3>Descriptions</h3>
534 552
535 <div class=grey><div class=white> 553 <div class=grey><div class=white>
536 <h4 class=darkHeader>Sequences producing significant alignments:</h4> 554 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
537 555
538 <table class=descriptiontable> 556 <table class=descriptiontable>
539 <col/><col/><col/><col/><col/><col/><col/> 557 <col/><col/><col/><col/><col/><col/><col/>
540 <tr> 558 <tr>
541 <th>Description</th> 559 <th>Description</th>
578 </section> 596 </section>
579 597
580 598
581 599
582 <section class=alignments> 600 <section class=alignments>
583 <h2>Alignments</h2> 601 <h3>Alignments</h3>
584 602
585 <div class=grey><div class=white> 603 <div class=grey><div class=white>
586 <div class=alignment id=hit1-1> 604 <div class=alignment id=hit1-1>
587 605
588 <div class=linkheader> 606 <div class=linkheader>
671 </section> 689 </section>
672 </section> 690 </section>
673 691
674 <section class=match id=match2> 692 <section class=match id=match2>
675 693
676 <h1>Nucleotide Sequence (20 letters)</h1> 694 <h2>Nucleotide Sequence (20 letters)</h2>
677 695
678 <section class=header> 696 <section class=header>
679 697
680 <table class=headerdata> 698 <table class=headerdata>
681 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 699 <tr><td class=param>Query number:</td><td>2</td></tr>
682 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 700 <tr><td class=param>Query ID:</td><td>Query_2</td></tr>
683 <tr><td class=param>Query length:</td><td>20</td></tr> 701 <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr>
684 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 702 <tr><td class=param>Length:</td><td>20</td></tr>
685 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
686 </table> 703 </table>
687 704
688 </section> 705 </section>
689 706
690 <section> 707 <section>
691 <h2>No Hits</h2> 708 <h3>No Hits</h3>
692 <div class=grey> 709 <div class=grey>
693 <table class=headerdata> 710 <table class=headerdata>
694 <tr><td class=param>Message:</td><td>No hits found</td></tr> 711 <tr><td class=param>Message:</td><td>No hits found</td></tr>
695 </table> 712 </table>
696 </div> 713 </div>
697 </section> 714 </section>
698 </section> 715 </section>
699 716
700 <section class=match id=match3> 717 <section class=match id=match3>
701 718
702 <h1>Nucleotide Sequence (20 letters)</h1> 719 <h2>Nucleotide Sequence (20 letters)</h2>
703 720
704 <section class=header> 721 <section class=header>
705 722
706 <table class=headerdata> 723 <table class=headerdata>
707 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 724 <tr><td class=param>Query number:</td><td>3</td></tr>
708 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 725 <tr><td class=param>Query ID:</td><td>Query_3</td></tr>
709 <tr><td class=param>Query length:</td><td>20</td></tr> 726 <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr>
710 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 727 <tr><td class=param>Length:</td><td>20</td></tr>
711 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
712 </table> 728 </table>
713 729
714 </section> 730 </section>
715 731
716 732
717 <section class=graphics> 733 <section class=graphics>
718 <h2>Graphic Summary</h2> 734 <h3>Graphic Summary</h3>
719 735
720 <div class=grey> 736 <div class=grey>
721 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> 737 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
722 738
723 <div class=defline id=defline3> 739 <div class=defline id=defline3>
724 Mouse-over to show defline and scores, click to show alignments 740 Mouse-over to show defline and scores, click to show alignments
725 </div> 741 </div>
726 742
727 <div class=graphic> 743 <div class=graphic>
728 <h4 class=darkHeader>Color key for alignment scores</h4> 744 <h5 class=darkHeader>Color key for alignment scores</h5>
729 <div class=legend><div class=graphicrow> 745 <div class=legend><div class=graphicrow>
730 <div class=graphicitem style="background-color: black">&lt;40</div> 746 <div class=graphicitem style="background-color: black">&lt;40</div>
731 <div class=graphicitem style="background-color: blue">40–50</div> 747 <div class=graphicitem style="background-color: blue">40–50</div>
732 <div class=graphicitem style="background-color: green">50–80</div> 748 <div class=graphicitem style="background-color: green">50–80</div>
733 <div class=graphicitem style="background-color: magenta">80–200</div> 749 <div class=graphicitem style="background-color: magenta">80–200</div>
817 </section> 833 </section>
818 834
819 835
820 836
821 <section class=descriptions> 837 <section class=descriptions>
822 <h2>Descriptions</h2> 838 <h3>Descriptions</h3>
823 839
824 <div class=grey><div class=white> 840 <div class=grey><div class=white>
825 <h4 class=darkHeader>Sequences producing significant alignments:</h4> 841 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
826 842
827 <table class=descriptiontable> 843 <table class=descriptiontable>
828 <col/><col/><col/><col/><col/><col/><col/> 844 <col/><col/><col/><col/><col/><col/><col/>
829 <tr> 845 <tr>
830 <th>Description</th> 846 <th>Description</th>
880 </section> 896 </section>
881 897
882 898
883 899
884 <section class=alignments> 900 <section class=alignments>
885 <h2>Alignments</h2> 901 <h3>Alignments</h3>
886 902
887 <div class=grey><div class=white> 903 <div class=grey><div class=white>
888 <div class=alignment id=hit3-1> 904 <div class=alignment id=hit3-1>
889 905
890 <div class=linkheader> 906 <div class=linkheader>
1015 </section> 1031 </section>
1016 </section> 1032 </section>
1017 1033
1018 <section class=match id=match4> 1034 <section class=match id=match4>
1019 1035
1020 <h1>Nucleotide Sequence (24 letters)</h1> 1036 <h2>Nucleotide Sequence (24 letters)</h2>
1021 1037
1022 <section class=header> 1038 <section class=header>
1023 1039
1024 <table class=headerdata> 1040 <table class=headerdata>
1025 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 1041 <tr><td class=param>Query number:</td><td>4</td></tr>
1026 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 1042 <tr><td class=param>Query ID:</td><td>Query_4</td></tr>
1027 <tr><td class=param>Query length:</td><td>20</td></tr> 1043 <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
1028 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 1044 <tr><td class=param>Length:</td><td>24</td></tr>
1029 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1030 </table> 1045 </table>
1031 1046
1032 </section> 1047 </section>
1033 1048
1034 <section> 1049 <section>
1035 <h2>No Hits</h2> 1050 <h3>No Hits</h3>
1036 <div class=grey> 1051 <div class=grey>
1037 <table class=headerdata> 1052 <table class=headerdata>
1038 <tr><td class=param>Message:</td><td>No hits found</td></tr> 1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1039 </table> 1054 </table>
1040 </div> 1055 </div>
1041 </section> 1056 </section>
1042 </section> 1057 </section>
1043 1058
1044 <section class=match id=match5> 1059 <section class=match id=match5>
1045 1060
1046 <h1>Nucleotide Sequence (20 letters)</h1> 1061 <h2>Nucleotide Sequence (20 letters)</h2>
1047 1062
1048 <section class=header> 1063 <section class=header>
1049 1064
1050 <table class=headerdata> 1065 <table class=headerdata>
1051 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 1066 <tr><td class=param>Query number:</td><td>5</td></tr>
1052 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 1067 <tr><td class=param>Query ID:</td><td>Query_5</td></tr>
1053 <tr><td class=param>Query length:</td><td>20</td></tr> 1068 <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
1054 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 1069 <tr><td class=param>Length:</td><td>20</td></tr>
1055 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1056 </table> 1070 </table>
1057 1071
1058 </section> 1072 </section>
1059 1073
1060 <section> 1074 <section>
1061 <h2>No Hits</h2> 1075 <h3>No Hits</h3>
1062 <div class=grey> 1076 <div class=grey>
1063 <table class=headerdata> 1077 <table class=headerdata>
1064 <tr><td class=param>Message:</td><td>No hits found</td></tr> 1078 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1065 </table> 1079 </table>
1066 </div> 1080 </div>
1067 </section> 1081 </section>
1068 </section> 1082 </section>
1069 1083
1070 <section class=match id=match6> 1084 <section class=match id=match6>
1071 1085
1072 <h1>Nucleotide Sequence (25 letters)</h1> 1086 <h2>Nucleotide Sequence (25 letters)</h2>
1073 1087
1074 <section class=header> 1088 <section class=header>
1075 1089
1076 <table class=headerdata> 1090 <table class=headerdata>
1077 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 1091 <tr><td class=param>Query number:</td><td>6</td></tr>
1078 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 1092 <tr><td class=param>Query ID:</td><td>Query_6</td></tr>
1079 <tr><td class=param>Query length:</td><td>20</td></tr> 1093 <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
1080 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 1094 <tr><td class=param>Length:</td><td>25</td></tr>
1081 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1082 </table> 1095 </table>
1083 1096
1084 </section> 1097 </section>
1085 1098
1086 1099
1087 <section class=graphics> 1100 <section class=graphics>
1088 <h2>Graphic Summary</h2> 1101 <h3>Graphic Summary</h3>
1089 1102
1090 <div class=grey> 1103 <div class=grey>
1091 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> 1104 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
1092 1105
1093 <div class=defline id=defline6> 1106 <div class=defline id=defline6>
1094 Mouse-over to show defline and scores, click to show alignments 1107 Mouse-over to show defline and scores, click to show alignments
1095 </div> 1108 </div>
1096 1109
1097 <div class=graphic> 1110 <div class=graphic>
1098 <h4 class=darkHeader>Color key for alignment scores</h4> 1111 <h5 class=darkHeader>Color key for alignment scores</h5>
1099 <div class=legend><div class=graphicrow> 1112 <div class=legend><div class=graphicrow>
1100 <div class=graphicitem style="background-color: black">&lt;40</div> 1113 <div class=graphicitem style="background-color: black">&lt;40</div>
1101 <div class=graphicitem style="background-color: blue">40–50</div> 1114 <div class=graphicitem style="background-color: blue">40–50</div>
1102 <div class=graphicitem style="background-color: green">50–80</div> 1115 <div class=graphicitem style="background-color: green">50–80</div>
1103 <div class=graphicitem style="background-color: magenta">80–200</div> 1116 <div class=graphicitem style="background-color: magenta">80–200</div>
1175 </section> 1188 </section>
1176 1189
1177 1190
1178 1191
1179 <section class=descriptions> 1192 <section class=descriptions>
1180 <h2>Descriptions</h2> 1193 <h3>Descriptions</h3>
1181 1194
1182 <div class=grey><div class=white> 1195 <div class=grey><div class=white>
1183 <h4 class=darkHeader>Sequences producing significant alignments:</h4> 1196 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
1184 1197
1185 <table class=descriptiontable> 1198 <table class=descriptiontable>
1186 <col/><col/><col/><col/><col/><col/><col/> 1199 <col/><col/><col/><col/><col/><col/><col/>
1187 <tr> 1200 <tr>
1188 <th>Description</th> 1201 <th>Description</th>
1225 </section> 1238 </section>
1226 1239
1227 1240
1228 1241
1229 <section class=alignments> 1242 <section class=alignments>
1230 <h2>Alignments</h2> 1243 <h3>Alignments</h3>
1231 1244
1232 <div class=grey><div class=white> 1245 <div class=grey><div class=white>
1233 <div class=alignment id=hit6-1> 1246 <div class=alignment id=hit6-1>
1234 1247
1235 <div class=linkheader> 1248 <div class=linkheader>
1318 </section> 1331 </section>
1319 </section> 1332 </section>
1320 1333
1321 <section class=match id=match7> 1334 <section class=match id=match7>
1322 1335
1323 <h1>Nucleotide Sequence (74 letters)</h1> 1336 <h2>Nucleotide Sequence (74 letters)</h2>
1324 1337
1325 <section class=header> 1338 <section class=header>
1326 1339
1327 <table class=headerdata> 1340 <table class=headerdata>
1328 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> 1341 <tr><td class=param>Query number:</td><td>7</td></tr>
1329 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> 1342 <tr><td class=param>Query ID:</td><td>Query_7</td></tr>
1330 <tr><td class=param>Query length:</td><td>20</td></tr> 1343 <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
1331 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> 1344 <tr><td class=param>Length:</td><td>74</td></tr>
1332 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1333 </table> 1345 </table>
1334 1346
1335 </section> 1347 </section>
1336 1348
1337 1349
1338 <section class=graphics> 1350 <section class=graphics>
1339 <h2>Graphic Summary</h2> 1351 <h3>Graphic Summary</h3>
1340 1352
1341 <div class=grey> 1353 <div class=grey>
1342 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> 1354 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
1343 1355
1344 <div class=defline id=defline7> 1356 <div class=defline id=defline7>
1345 Mouse-over to show defline and scores, click to show alignments 1357 Mouse-over to show defline and scores, click to show alignments
1346 </div> 1358 </div>
1347 1359
1348 <div class=graphic> 1360 <div class=graphic>
1349 <h4 class=darkHeader>Color key for alignment scores</h4> 1361 <h5 class=darkHeader>Color key for alignment scores</h5>
1350 <div class=legend><div class=graphicrow> 1362 <div class=legend><div class=graphicrow>
1351 <div class=graphicitem style="background-color: black">&lt;40</div> 1363 <div class=graphicitem style="background-color: black">&lt;40</div>
1352 <div class=graphicitem style="background-color: blue">40–50</div> 1364 <div class=graphicitem style="background-color: blue">40–50</div>
1353 <div class=graphicitem style="background-color: green">50–80</div> 1365 <div class=graphicitem style="background-color: green">50–80</div>
1354 <div class=graphicitem style="background-color: magenta">80–200</div> 1366 <div class=graphicitem style="background-color: magenta">80–200</div>
1426 </section> 1438 </section>
1427 1439
1428 1440
1429 1441
1430 <section class=descriptions> 1442 <section class=descriptions>
1431 <h2>Descriptions</h2> 1443 <h3>Descriptions</h3>
1432 1444
1433 <div class=grey><div class=white> 1445 <div class=grey><div class=white>
1434 <h4 class=darkHeader>Sequences producing significant alignments:</h4> 1446 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
1435 1447
1436 <table class=descriptiontable> 1448 <table class=descriptiontable>
1437 <col/><col/><col/><col/><col/><col/><col/> 1449 <col/><col/><col/><col/><col/><col/><col/>
1438 <tr> 1450 <tr>
1439 <th>Description</th> 1451 <th>Description</th>
1476 </section> 1488 </section>
1477 1489
1478 1490
1479 1491
1480 <section class=alignments> 1492 <section class=alignments>
1481 <h2>Alignments</h2> 1493 <h3>Alignments</h3>
1482 1494
1483 <div class=grey><div class=white> 1495 <div class=grey><div class=white>
1484 <div class=alignment id=hit7-1> 1496 <div class=alignment id=hit7-1>
1485 1497
1486 <div class=linkheader> 1498 <div class=linkheader>