Mercurial > repos > jankanis > blast2html

comparison test-data/blast xml example3.html @ 32:ce8f29efc0a1

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix tests
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 17:22:02 +0200
parents
children 3bb5da68305e
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31:344cd76f6fd2 32:ce8f29efc0a1
1 <!DOCTYPE html>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <meta name=generator content="blast2html; see ...">
6
7 <title>Blast output</title>
8
9 <style>
10 body {
11 color: #333333;
12 font-family: Arial,Sans-Serif;
13 }
14
15 :link {
16 color: #336699;
17 }
18
19 .right {
20 float: right;
21 }
22
23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
24 #strip_html_warning {
25 display: none;
26 }
27
28 #content {
29 margin: 0 2em;
30 padding: 0.5em;
31 border: 1px solid #888888;
32 background-color: #d3dff5;
33 }
34
35 h1, h2, h3, h4, h5, h6 {
36 color: #2A6979;
37 font-family: arial,verdana,sans-serif;
38 letter-spacing: -1px;
39 margin: 1.2em 0 0.3em;
40 }
41
42 h1 {
43 border-bottom: 1px solid #CCCCCC;
44 font-size: 150%;
45 padding-bottom: 0.1em;
46 }
47
48 h2 {
49 font-size: 120%;
50 font-weight: bold;
51 }
52
53 h4.darkHeader {
54 color: #4D4D4D;
55 letter-spacing: 0;
56 font-weight: bold;
57 }
58
59 #nodata {
60 font-weight: bold;
61 }
62
63 .index {
64 margin-bottom: 3em;
65 }
66 .index div.indexentry {
67 margin: 1.2em 1.6em;
68 font-weight: bold;
69 font-size: 100%;
70 }
71
72 .headerdata {
73 font-size: 90%;
74 }
75 .headerdata .param {
76 font-weight: bold;
77 text-align: right;
78 padding: 0 1em;
79 }
80
81 .grey {
82 background-color: #eeeeee;
83 border: 1px solid #cccccc;
84 padding: 1em;
85 }
86
87 .white {
88 background-color: white;
89 border: 1px solid #cccccc;
90 padding: 1.5em 2%;
91 }
92
93 .graphicrow {
94 clear: left;
95 width: 100%;
96 }
97
98 .graphicitem {
99 float: left;
100 }
101
102
103
104 .graphics .grey {
105 text-align: center;
106 }
107
108 .graphic {
109 background-color: white;
110 border: 2px solid black;
111 padding: 1.5em;
112 margin: auto;
113 }
114
115 .centered, .defline, div.legend, div.tablewrapper {
116 margin-left: auto;
117 margin-right: auto;
118 }
119
120 .defline {
121 background-color: white;
122 border: 1px solid black;
123 margin: .5em auto;
124 padding-left: .2em;
125 padding-right: .2em;
126 max-width: 50em;
127 text-align: left;
128 height: 2.8em;
129 overflow-y: hidden;
130 }
131
132 div.legend {
133 max-width: 40em;
134 }
135 div.legend div {
136 width: 100%;
137 color: white;
138 font-weight: bold;
139 border-spacing: 0;
140 }
141 div.legend div .graphicitem {
142 width: 20%;
143 padding: 0;
144 margin: 0;
145 border: none;
146 }
147
148 div.tablewrapper {
149 width: 50%;
150 min-width: 60em;
151 }
152
153 /* For small widths we give the graphic 100% */
154 @media (max-width: 72.5em) {
155 div.tablewrapper {
156 width: 100%;
157 min-width: 0px;
158 }
159 }
160
161 .scale {
162 width: 100%;
163 margin: .5em 0;
164 font-weight: bold;
165 }
166 .scale div {
167 color: red;
168 text-align: left;
169 }
170 .scale .graphicrow {
171 margin: .5em 0 .5em 0;
172 color: white;
173 }
174 .scale .graphicitem {
175 position: relative;
176 }
177 .scale .graphicitem div {
178 margin: 0 1px;
179 padding: 0 2px;
180 text-align: right;
181 background-color: red;
182 color: white;
183 }
184 .scale .graphicitem:first-child div {
185 margin-left: 0px;
186 }
187 .scale .graphicitem:last-child div {
188 margin-right: 0px;
189 }
190 .scale .graphicitem .lastlabel {
191 position: absolute;
192 top: 0px;
193 left: 100%;
194 background-color: transparent;
195 color: red;
196 }
197
198 a.matchresult {
199 display: block;
200 margin: 0;
201 padding: 0;
202 }
203 div.matchrow {
204 margin-top: 4px;
205 }
206 div.matchrow, div.matchitem {
207 height: 4px;
208 }
209
210
211 table.descriptiontable {
212 font-size: 85%;
213 border: 1px solid #97b0c8;
214 border-spacing: 0;
215 color: #222222;
216 line-height: 1.3em;
217 background-color: white;
218 }
219 table.descriptiontable col:first-child {
220 width: 100%;
221 }
222 table.descriptiontable tr:hover {
223 background-color: #D5DEE3;
224 }
225 table.descriptiontable th {
226 color: #14376C;
227 font-weight: normal;
228 background-color: #F0F0F0;
229 background: linear-gradient(#FFFFFF, #F0F0F0);
230 border-bottom: 1px solid #D4DFE9;
231 border-right: 1px solid #CFCFCF;
232 border-left: 0px solid black;
233 border-top: 0px solid black;
234 }
235 table.descriptiontable td {
236 overflow: hidden;
237 text-align: center;
238 padding: .4em .8em;
239 }
240 table.descriptiontable td div {
241 width: 1em;
242 overflow: visible;
243 white-space: nowrap;
244 text-align: left;
245 }
246
247
248
249 .alignments .white {
250 padding: 1.5em 1em;
251 }
252
253 .alignment {
254 border-top: 1px solid black;
255 padding-left: 1em;
256 padding-right: 1em;
257 }
258
259 div.linkheader {
260 padding-top: .2em;
261 font-size: 85%;
262 color: #14376C;
263 }
264 div.linkheader a.linkheader {
265 margin-right: 1em;
266 }
267 div.linkheader .right a {
268 text-decoration: none;
269 }
270
271 .title .hittitle {
272 color: #222222;
273 margin-bottom: .3em;
274 }
275 .title .titleinfo {
276 font-size: 80%;
277 margin-top: 0;
278 margin-bottom: .3em;
279 }
280 .title .titleinfo .b {
281 color: #606060;
282 font-weight: bold;
283 font-size: 90%;
284 }
285
286 .moretitles {
287 margin: 1.2em;
288 }
289 .moretitles .titleinfo {
290 margin: 0;
291 padding: 0;
292 }
293 .moretitles .hittitle {
294 margin: .4em 0 .2em 0;
295 padding: 0;
296 }
297
298 a.showmoretitles {
299 font-size: 75%;
300 color: #336699;
301 font-weight: bold;
302 margin-top: 0;
303 }
304 a.showmoretitles:hover {
305 }
306
307 .hotspot {
308 color: #606060;
309 font-family: verdana, arial, sans-serif;
310 margin-bottom: 2.5em;
311 }
312
313 .hotspot p.range {
314 font-size: 70%;
315 margin-top: 0;
316 margin-top: 1em;
317 margin-bottom: .2em;
318 }
319 .hotspot p.range span.range {
320 font-weight: bold;
321 }
322 .hotspot p.range a.range {
323 margin-left: .5em;
324 }
325
326 table.hotspotstable {
327 border-top: 1px solid;
328 border-bottom: 1px solid;
329 text-align: left;
330 border-collapse: collapse;
331 }
332 table.hotspotstable th, table.hotspotstable td {
333 padding: .1em 1em;
334 }
335 table.hotspotstable th {
336 font-size: 70%;
337 }
338 table.hotspotstable td {
339 min-width: 7em;
340 color: #222222;
341 font-size: 80%;
342 }
343
344 pre.alignmentgraphic {
345 color: #222222;
346 }
347
348 footer {
349 text-align: center;
350 color: #cccccc;
351 font-size: 70%;
352 margin-top: 1em;
353 }
354 footer :link {
355 color: #5588cc;
356 }
357
358 </style>
359
360 <script type="text/javascript">
361 function toggle_visibility(id) {
362 var e = document.getElementById(id);
363 if(e.style.display != 'block')
364 e.style.display = 'block';
365 else
366 e.style.display = 'none';
367 }
368 </script>
369
370 </head>
371
372
373 <body>
374
375 <div id="strip_html_warning">
376 <!-- This div should be hidden by the header css block. Galaxy
377 strips all css, breaking this page but making this warning
378 visible. This warning contains some ugly old skool tabular html
379 layout that is not stripped. -->
380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
383 </b></font></td></tr></table>
384 </div>
385
386 <div id=content>
387
388
389 <section class=index>
390 <h1>Queries</h1>
391
392 <div class=indexentry><a href="#match1">
393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
394 (20 letters, 0 hits)
395 </a></div>
396 <div class=indexentry><a href="#match2">
397 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
398 (20 letters, 0 hits)
399 </a></div>
400 <div class=indexentry><a href="#match3">
401 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
402 (20 letters, 1 hits)
403 </a></div>
404 <div class=indexentry><a href="#match4">
405 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
406 (20 letters, 0 hits)
407 </a></div>
408 <div class=indexentry><a href="#match5">
409 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
410 (20 letters, 0 hits)
411 </a></div>
412 <div class=indexentry><a href="#match6">
413 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
414 (20 letters, 1 hits)
415 </a></div>
416 <div class=indexentry><a href="#match7">
417 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
418 (20 letters, 0 hits)
419 </a></div>
420 <div class=indexentry><a href="#match8">
421 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
422 (20 letters, 0 hits)
423 </a></div>
424 <div class=indexentry><a href="#match9">
425 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
426 (20 letters, 0 hits)
427 </a></div>
428 <div class=indexentry><a href="#match10">
429 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
430 (20 letters, 0 hits)
431 </a></div>
432 <div class=indexentry><a href="#match11">
433 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
434 (20 letters, 0 hits)
435 </a></div>
436 <div class=indexentry><a href="#match12">
437 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
438 (20 letters, 0 hits)
439 </a></div>
440 <div class=indexentry><a href="#match13">
441 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
442 (20 letters, 0 hits)
443 </a></div>
444 <div class=indexentry><a href="#match14">
445 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
446 (20 letters, 0 hits)
447 </a></div>
448 <div class=indexentry><a href="#match15">
449 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
450 (20 letters, 0 hits)
451 </a></div>
452 <div class=indexentry><a href="#match16">
453 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
454 (20 letters, 0 hits)
455 </a></div>
456 <div class=indexentry><a href="#match17">
457 Query_3: Probe|NOST-Spec_(Genetic_ID)
458 (20 letters, 0 hits)
459 </a></div>
460 <div class=indexentry><a href="#match18">
461 Query_3: Probe|NOST-Spec_(Genetic_ID)
462 (20 letters, 1 hits)
463 </a></div>
464 <div class=indexentry><a href="#match19">
465 Query_3: Probe|NOST-Spec_(Genetic_ID)
466 (20 letters, 1 hits)
467 </a></div>
468 <div class=indexentry><a href="#match20">
469 Query_3: Probe|NOST-Spec_(Genetic_ID)
470 (20 letters, 0 hits)
471 </a></div>
472 <div class=indexentry><a href="#match21">
473 Query_3: Probe|NOST-Spec_(Genetic_ID)
474 (20 letters, 0 hits)
475 </a></div>
476 <div class=indexentry><a href="#match22">
477 Query_3: Probe|NOST-Spec_(Genetic_ID)
478 (20 letters, 1 hits)
479 </a></div>
480 <div class=indexentry><a href="#match23">
481 Query_3: Probe|NOST-Spec_(Genetic_ID)
482 (20 letters, 0 hits)
483 </a></div>
484 <div class=indexentry><a href="#match24">
485 Query_3: Probe|NOST-Spec_(Genetic_ID)
486 (20 letters, 0 hits)
487 </a></div>
488 <div class=indexentry><a href="#match25">
489 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
490 (24 letters, 0 hits)
491 </a></div>
492 <div class=indexentry><a href="#match26">
493 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
494 (24 letters, 0 hits)
495 </a></div>
496 <div class=indexentry><a href="#match27">
497 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
498 (24 letters, 0 hits)
499 </a></div>
500 <div class=indexentry><a href="#match28">
501 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
502 (24 letters, 0 hits)
503 </a></div>
504 <div class=indexentry><a href="#match29">
505 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
506 (24 letters, 0 hits)
507 </a></div>
508 <div class=indexentry><a href="#match30">
509 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
510 (24 letters, 0 hits)
511 </a></div>
512 <div class=indexentry><a href="#match31">
513 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
514 (24 letters, 0 hits)
515 </a></div>
516 <div class=indexentry><a href="#match32">
517 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
518 (24 letters, 0 hits)
519 </a></div>
520 <div class=indexentry><a href="#match33">
521 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
522 (20 letters, 0 hits)
523 </a></div>
524 <div class=indexentry><a href="#match34">
525 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
526 (20 letters, 0 hits)
527 </a></div>
528 <div class=indexentry><a href="#match35">
529 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
530 (20 letters, 0 hits)
531 </a></div>
532 <div class=indexentry><a href="#match36">
533 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
534 (20 letters, 0 hits)
535 </a></div>
536 <div class=indexentry><a href="#match37">
537 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
538 (20 letters, 0 hits)
539 </a></div>
540 <div class=indexentry><a href="#match38">
541 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
542 (20 letters, 0 hits)
543 </a></div>
544 <div class=indexentry><a href="#match39">
545 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
546 (20 letters, 0 hits)
547 </a></div>
548 <div class=indexentry><a href="#match40">
549 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
550 (20 letters, 0 hits)
551 </a></div>
552 <div class=indexentry><a href="#match41">
553 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
554 (25 letters, 0 hits)
555 </a></div>
556 <div class=indexentry><a href="#match42">
557 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
558 (25 letters, 0 hits)
559 </a></div>
560 <div class=indexentry><a href="#match43">
561 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
562 (25 letters, 0 hits)
563 </a></div>
564 <div class=indexentry><a href="#match44">
565 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
566 (25 letters, 0 hits)
567 </a></div>
568 <div class=indexentry><a href="#match45">
569 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
570 (25 letters, 0 hits)
571 </a></div>
572 <div class=indexentry><a href="#match46">
573 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
574 (25 letters, 0 hits)
575 </a></div>
576 <div class=indexentry><a href="#match47">
577 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
578 (25 letters, 1 hits)
579 </a></div>
580 <div class=indexentry><a href="#match48">
581 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
582 (25 letters, 1 hits)
583 </a></div>
584 <div class=indexentry><a href="#match49">
585 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
586 (74 letters, 0 hits)
587 </a></div>
588 <div class=indexentry><a href="#match50">
589 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
590 (74 letters, 0 hits)
591 </a></div>
592 <div class=indexentry><a href="#match51">
593 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
594 (74 letters, 0 hits)
595 </a></div>
596 <div class=indexentry><a href="#match52">
597 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
598 (74 letters, 0 hits)
599 </a></div>
600 <div class=indexentry><a href="#match53">
601 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
602 (74 letters, 0 hits)
603 </a></div>
604 <div class=indexentry><a href="#match54">
605 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
606 (74 letters, 0 hits)
607 </a></div>
608 <div class=indexentry><a href="#match55">
609 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
610 (74 letters, 1 hits)
611 </a></div>
612 <div class=indexentry><a href="#match56">
613 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
614 (74 letters, 1 hits)
615 </a></div>
616
617 </section>
618
619
620 <section class=match id=match1>
621
622 <h1>Nucleotide Sequence (20 letters)</h1>
623
624 <section class=header>
625
626 <table class=headerdata>
627 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
628 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
629 <tr><td class=param>Query length:</td><td>20</td></tr>
630 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
631 <tr><td class=param>Database:</td><td></td></tr>
632 </table>
633
634 </section>
635
636 <section>
637 <h2>No Hits</h2>
638 <div class=grey>
639 <table class=headerdata>
640 <tr><td class=param>Message:</td><td>No hits found</td></tr>
641 </table>
642 </div>
643 </section>
644 </section>
645
646 <section class=match id=match2>
647
648 <h1>Nucleotide Sequence (20 letters)</h1>
649
650 <section class=header>
651
652 <table class=headerdata>
653 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
654 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
655 <tr><td class=param>Query length:</td><td>20</td></tr>
656 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
657 <tr><td class=param>Database:</td><td></td></tr>
658 </table>
659
660 </section>
661
662 <section>
663 <h2>No Hits</h2>
664 <div class=grey>
665 <table class=headerdata>
666 <tr><td class=param>Message:</td><td>No hits found</td></tr>
667 </table>
668 </div>
669 </section>
670 </section>
671
672 <section class=match id=match3>
673
674 <h1>Nucleotide Sequence (20 letters)</h1>
675
676 <section class=header>
677
678 <table class=headerdata>
679 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
680 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
681 <tr><td class=param>Query length:</td><td>20</td></tr>
682 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
683 <tr><td class=param>Database:</td><td></td></tr>
684 </table>
685
686 </section>
687
688
689 <section class=graphics>
690 <h2>Graphic Summary</h2>
691
692 <div class=grey>
693 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
694
695 <div class=defline id=defline3>
696 Mouse-over to show defline and scores, click to show alignments
697 </div>
698
699 <div class=graphic>
700 <h4 class=darkHeader>Color key for alignment scores</h4>
701 <div class=legend><div class=graphicrow>
702 <div class=graphicitem style="background-color: black">&lt;40</div>
703 <div class=graphicitem style="background-color: blue">40–50</div>
704 <div class=graphicitem style="background-color: green">50–80</div>
705 <div class=graphicitem style="background-color: magenta">80–200</div>
706 <div class=graphicitem style="background-color: red">200≤</div>
707 </div></div>
708 <div style="clear: left"></div>
709
710 <div class=tablewrapper>
711
712 <div class=scale>
713 <div>query:</div>
714 <div class=graphicrow>
715 <div>
716 <div class=graphicitem style="width: 10.0%">
717 <div>2</div>
718 </div>
719 <div class=graphicitem style="width: 10.0%">
720 <div>4</div>
721 </div>
722 <div class=graphicitem style="width: 10.0%">
723 <div>6</div>
724 </div>
725 <div class=graphicitem style="width: 10.0%">
726 <div>8</div>
727 </div>
728 <div class=graphicitem style="width: 10.0%">
729 <div>10</div>
730 </div>
731 <div class=graphicitem style="width: 10.0%">
732 <div>12</div>
733 </div>
734 <div class=graphicitem style="width: 10.0%">
735 <div>14</div>
736 </div>
737 <div class=graphicitem style="width: 10.0%">
738 <div>16</div>
739 </div>
740 <div class=graphicitem style="width: 10.0%">
741 <div>18</div>
742 </div>
743 <div class=graphicitem style="width: 10.0%">
744 <div>20</div>
745 </div>
746 </div>
747 </div>
748 <div style="clear: left"></div>
749 </div>
750
751 <a class=matchresult
752 href="#hit1"
753 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
754 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
755 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
756 <div class="matchrow graphicrow">
757 <div class="matchitem graphicitem"
758 style="background-color: black; width: 100.0%"></div>
759 </div>
760 </a>
761
762 </div>
763 </div>
764 </div>
765 </section>
766
767
768
769 <section class=descriptions>
770 <h2>Descriptions</h2>
771
772 <div class=grey><div class=white>
773 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
774
775 <table class=descriptiontable>
776 <col/><col/><col/><col/><col/><col/><col/>
777 <tr>
778 <th>Description</th>
779 <th>Max score</th>
780 <th>Total score</th>
781 <th>Query cover</th>
782 <th>E value</th>
783 <th>Ident</th>
784 <th>Accession</th>
785 </tr>
786 <tr>
787 <td><div><a href="#hit1"
788 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
789 id="description1">
790 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
791 </a></div></td>
792 <td>37.4</td>
793 <td>37.4</td>
794 <td>100%</td>
795 <td>7.011e-08</td>
796 <td>100%</td>
797 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a></td>
798 </tr>
799 </table>
800
801 </div></div>
802 </section>
803
804
805
806 <section class=alignments>
807 <h2>Alignments</h2>
808
809 <div class=grey><div class=white>
810 <div class=alignment id=hit1>
811
812 <div class=linkheader>
813 <div class=right><a href="#description1">Descriptions</a></div>
814 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">GenBank</a>
815 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&amp;log$=nuclalign">Graphics</a>
816 </div>
817
818 <div class=title>
819 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
820 <p class=titleinfo>
821 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a>
822 <span class=b>Length:</span> 323
823 <span class=b>Number of Matches:</span> 1
824 </p>
825 </div>
826
827
828 <div class=hotspot>
829 <p class=range>
830 <span class=range>Range 1: 200 to 219</span>
831 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign&amp;from=200&amp;to=219">GenBank</a>
832 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&amp;log$=nuclalign&amp;from=200&amp;to=219">Graphics</a>
833 </p>
834
835 <table class=hotspotstable>
836 <tr>
837 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
838 </tr>
839 <tr>
840 <td>37.4 bits(40)</td>
841 <td>0.0</td>
842 <td>20/20(100%)</td>
843 <td>0/20(0%)</td>
844 <td>Plus/Plus</td>
845 </tr>
846 </table>
847
848 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
849 ||||||||||||||||||||
850 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
851 </div>
852
853 </div>
854
855 </div></div>
856 </section>
857 </section>
858
859 <section class=match id=match4>
860
861 <h1>Nucleotide Sequence (20 letters)</h1>
862
863 <section class=header>
864
865 <table class=headerdata>
866 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
867 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
868 <tr><td class=param>Query length:</td><td>20</td></tr>
869 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
870 <tr><td class=param>Database:</td><td></td></tr>
871 </table>
872
873 </section>
874
875 <section>
876 <h2>No Hits</h2>
877 <div class=grey>
878 <table class=headerdata>
879 <tr><td class=param>Message:</td><td>No hits found</td></tr>
880 </table>
881 </div>
882 </section>
883 </section>
884
885 <section class=match id=match5>
886
887 <h1>Nucleotide Sequence (20 letters)</h1>
888
889 <section class=header>
890
891 <table class=headerdata>
892 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
893 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
894 <tr><td class=param>Query length:</td><td>20</td></tr>
895 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
896 <tr><td class=param>Database:</td><td></td></tr>
897 </table>
898
899 </section>
900
901 <section>
902 <h2>No Hits</h2>
903 <div class=grey>
904 <table class=headerdata>
905 <tr><td class=param>Message:</td><td>No hits found</td></tr>
906 </table>
907 </div>
908 </section>
909 </section>
910
911 <section class=match id=match6>
912
913 <h1>Nucleotide Sequence (20 letters)</h1>
914
915 <section class=header>
916
917 <table class=headerdata>
918 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
919 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
920 <tr><td class=param>Query length:</td><td>20</td></tr>
921 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
922 <tr><td class=param>Database:</td><td></td></tr>
923 </table>
924
925 </section>
926
927
928 <section class=graphics>
929 <h2>Graphic Summary</h2>
930
931 <div class=grey>
932 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
933
934 <div class=defline id=defline6>
935 Mouse-over to show defline and scores, click to show alignments
936 </div>
937
938 <div class=graphic>
939 <h4 class=darkHeader>Color key for alignment scores</h4>
940 <div class=legend><div class=graphicrow>
941 <div class=graphicitem style="background-color: black">&lt;40</div>
942 <div class=graphicitem style="background-color: blue">40–50</div>
943 <div class=graphicitem style="background-color: green">50–80</div>
944 <div class=graphicitem style="background-color: magenta">80–200</div>
945 <div class=graphicitem style="background-color: red">200≤</div>
946 </div></div>
947 <div style="clear: left"></div>
948
949 <div class=tablewrapper>
950
951 <div class=scale>
952 <div>query:</div>
953 <div class=graphicrow>
954 <div>
955 <div class=graphicitem style="width: 10.0%">
956 <div>2</div>
957 </div>
958 <div class=graphicitem style="width: 10.0%">
959 <div>4</div>
960 </div>
961 <div class=graphicitem style="width: 10.0%">
962 <div>6</div>
963 </div>
964 <div class=graphicitem style="width: 10.0%">
965 <div>8</div>
966 </div>
967 <div class=graphicitem style="width: 10.0%">
968 <div>10</div>
969 </div>
970 <div class=graphicitem style="width: 10.0%">
971 <div>12</div>
972 </div>
973 <div class=graphicitem style="width: 10.0%">
974 <div>14</div>
975 </div>
976 <div class=graphicitem style="width: 10.0%">
977 <div>16</div>
978 </div>
979 <div class=graphicitem style="width: 10.0%">
980 <div>18</div>
981 </div>
982 <div class=graphicitem style="width: 10.0%">
983 <div>20</div>
984 </div>
985 </div>
986 </div>
987 <div style="clear: left"></div>
988 </div>
989
990 <a class=matchresult
991 href="#hit1"
992 onmouseover='document.getElementById("defline6").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
993 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
994 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
995 <div class="matchrow graphicrow">
996 <div class="matchitem graphicitem"
997 style="background-color: black; width: 100.0%"></div>
998 </div>
999 </a>
1000
1001 </div>
1002 </div>
1003 </div>
1004 </section>
1005
1006
1007
1008 <section class=descriptions>
1009 <h2>Descriptions</h2>
1010
1011 <div class=grey><div class=white>
1012 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1013
1014 <table class=descriptiontable>
1015 <col/><col/><col/><col/><col/><col/><col/>
1016 <tr>
1017 <th>Description</th>
1018 <th>Max score</th>
1019 <th>Total score</th>
1020 <th>Query cover</th>
1021 <th>E value</th>
1022 <th>Ident</th>
1023 <th>Accession</th>
1024 </tr>
1025 <tr>
1026 <td><div><a href="#hit1"
1027 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
1028 id="description1">
1029 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
1030 </a></div></td>
1031 <td>37.4</td>
1032 <td>37.4</td>
1033 <td>100%</td>
1034 <td>7.011e-08</td>
1035 <td>100%</td>
1036 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a></td>
1037 </tr>
1038 </table>
1039
1040 </div></div>
1041 </section>
1042
1043
1044
1045 <section class=alignments>
1046 <h2>Alignments</h2>
1047
1048 <div class=grey><div class=white>
1049 <div class=alignment id=hit1>
1050
1051 <div class=linkheader>
1052 <div class=right><a href="#description1">Descriptions</a></div>
1053 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">GenBank</a>
1054 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&amp;log$=nuclalign">Graphics</a>
1055 </div>
1056
1057 <div class=title>
1058 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
1059 <p class=titleinfo>
1060 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a>
1061 <span class=b>Length:</span> 2457
1062 <span class=b>Number of Matches:</span> 1
1063 </p>
1064 </div>
1065
1066
1067 <div class=hotspot>
1068 <p class=range>
1069 <span class=range>Range 1: 2119 to 2138</span>
1070 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign&amp;from=2119&amp;to=2138">GenBank</a>
1071 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&amp;log$=nuclalign&amp;from=2119&amp;to=2138">Graphics</a>
1072 </p>
1073
1074 <table class=hotspotstable>
1075 <tr>
1076 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1077 </tr>
1078 <tr>
1079 <td>37.4 bits(40)</td>
1080 <td>0.0</td>
1081 <td>20/20(100%)</td>
1082 <td>0/20(0%)</td>
1083 <td>Plus/Plus</td>
1084 </tr>
1085 </table>
1086
1087 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
1088 ||||||||||||||||||||
1089 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
1090 </div>
1091
1092 </div>
1093
1094 </div></div>
1095 </section>
1096 </section>
1097
1098 <section class=match id=match7>
1099
1100 <h1>Nucleotide Sequence (20 letters)</h1>
1101
1102 <section class=header>
1103
1104 <table class=headerdata>
1105 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1106 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1107 <tr><td class=param>Query length:</td><td>20</td></tr>
1108 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1109 <tr><td class=param>Database:</td><td></td></tr>
1110 </table>
1111
1112 </section>
1113
1114 <section>
1115 <h2>No Hits</h2>
1116 <div class=grey>
1117 <table class=headerdata>
1118 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1119 </table>
1120 </div>
1121 </section>
1122 </section>
1123
1124 <section class=match id=match8>
1125
1126 <h1>Nucleotide Sequence (20 letters)</h1>
1127
1128 <section class=header>
1129
1130 <table class=headerdata>
1131 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1132 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1133 <tr><td class=param>Query length:</td><td>20</td></tr>
1134 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1135 <tr><td class=param>Database:</td><td></td></tr>
1136 </table>
1137
1138 </section>
1139
1140 <section>
1141 <h2>No Hits</h2>
1142 <div class=grey>
1143 <table class=headerdata>
1144 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1145 </table>
1146 </div>
1147 </section>
1148 </section>
1149
1150 <section class=match id=match9>
1151
1152 <h1>Nucleotide Sequence (20 letters)</h1>
1153
1154 <section class=header>
1155
1156 <table class=headerdata>
1157 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1158 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1159 <tr><td class=param>Query length:</td><td>20</td></tr>
1160 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1161 <tr><td class=param>Database:</td><td></td></tr>
1162 </table>
1163
1164 </section>
1165
1166 <section>
1167 <h2>No Hits</h2>
1168 <div class=grey>
1169 <table class=headerdata>
1170 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1171 </table>
1172 </div>
1173 </section>
1174 </section>
1175
1176 <section class=match id=match10>
1177
1178 <h1>Nucleotide Sequence (20 letters)</h1>
1179
1180 <section class=header>
1181
1182 <table class=headerdata>
1183 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1184 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1185 <tr><td class=param>Query length:</td><td>20</td></tr>
1186 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1187 <tr><td class=param>Database:</td><td></td></tr>
1188 </table>
1189
1190 </section>
1191
1192 <section>
1193 <h2>No Hits</h2>
1194 <div class=grey>
1195 <table class=headerdata>
1196 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1197 </table>
1198 </div>
1199 </section>
1200 </section>
1201
1202 <section class=match id=match11>
1203
1204 <h1>Nucleotide Sequence (20 letters)</h1>
1205
1206 <section class=header>
1207
1208 <table class=headerdata>
1209 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1210 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1211 <tr><td class=param>Query length:</td><td>20</td></tr>
1212 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1213 <tr><td class=param>Database:</td><td></td></tr>
1214 </table>
1215
1216 </section>
1217
1218 <section>
1219 <h2>No Hits</h2>
1220 <div class=grey>
1221 <table class=headerdata>
1222 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1223 </table>
1224 </div>
1225 </section>
1226 </section>
1227
1228 <section class=match id=match12>
1229
1230 <h1>Nucleotide Sequence (20 letters)</h1>
1231
1232 <section class=header>
1233
1234 <table class=headerdata>
1235 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1236 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1237 <tr><td class=param>Query length:</td><td>20</td></tr>
1238 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1239 <tr><td class=param>Database:</td><td></td></tr>
1240 </table>
1241
1242 </section>
1243
1244 <section>
1245 <h2>No Hits</h2>
1246 <div class=grey>
1247 <table class=headerdata>
1248 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1249 </table>
1250 </div>
1251 </section>
1252 </section>
1253
1254 <section class=match id=match13>
1255
1256 <h1>Nucleotide Sequence (20 letters)</h1>
1257
1258 <section class=header>
1259
1260 <table class=headerdata>
1261 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1262 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1263 <tr><td class=param>Query length:</td><td>20</td></tr>
1264 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1265 <tr><td class=param>Database:</td><td></td></tr>
1266 </table>
1267
1268 </section>
1269
1270 <section>
1271 <h2>No Hits</h2>
1272 <div class=grey>
1273 <table class=headerdata>
1274 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1275 </table>
1276 </div>
1277 </section>
1278 </section>
1279
1280 <section class=match id=match14>
1281
1282 <h1>Nucleotide Sequence (20 letters)</h1>
1283
1284 <section class=header>
1285
1286 <table class=headerdata>
1287 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1288 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1289 <tr><td class=param>Query length:</td><td>20</td></tr>
1290 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1291 <tr><td class=param>Database:</td><td></td></tr>
1292 </table>
1293
1294 </section>
1295
1296 <section>
1297 <h2>No Hits</h2>
1298 <div class=grey>
1299 <table class=headerdata>
1300 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1301 </table>
1302 </div>
1303 </section>
1304 </section>
1305
1306 <section class=match id=match15>
1307
1308 <h1>Nucleotide Sequence (20 letters)</h1>
1309
1310 <section class=header>
1311
1312 <table class=headerdata>
1313 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1314 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1315 <tr><td class=param>Query length:</td><td>20</td></tr>
1316 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1317 <tr><td class=param>Database:</td><td></td></tr>
1318 </table>
1319
1320 </section>
1321
1322 <section>
1323 <h2>No Hits</h2>
1324 <div class=grey>
1325 <table class=headerdata>
1326 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1327 </table>
1328 </div>
1329 </section>
1330 </section>
1331
1332 <section class=match id=match16>
1333
1334 <h1>Nucleotide Sequence (20 letters)</h1>
1335
1336 <section class=header>
1337
1338 <table class=headerdata>
1339 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1340 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1341 <tr><td class=param>Query length:</td><td>20</td></tr>
1342 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1343 <tr><td class=param>Database:</td><td></td></tr>
1344 </table>
1345
1346 </section>
1347
1348 <section>
1349 <h2>No Hits</h2>
1350 <div class=grey>
1351 <table class=headerdata>
1352 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1353 </table>
1354 </div>
1355 </section>
1356 </section>
1357
1358 <section class=match id=match17>
1359
1360 <h1>Nucleotide Sequence (20 letters)</h1>
1361
1362 <section class=header>
1363
1364 <table class=headerdata>
1365 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1366 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1367 <tr><td class=param>Query length:</td><td>20</td></tr>
1368 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1369 <tr><td class=param>Database:</td><td></td></tr>
1370 </table>
1371
1372 </section>
1373
1374 <section>
1375 <h2>No Hits</h2>
1376 <div class=grey>
1377 <table class=headerdata>
1378 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1379 </table>
1380 </div>
1381 </section>
1382 </section>
1383
1384 <section class=match id=match18>
1385
1386 <h1>Nucleotide Sequence (20 letters)</h1>
1387
1388 <section class=header>
1389
1390 <table class=headerdata>
1391 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1392 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1393 <tr><td class=param>Query length:</td><td>20</td></tr>
1394 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1395 <tr><td class=param>Database:</td><td></td></tr>
1396 </table>
1397
1398 </section>
1399
1400
1401 <section class=graphics>
1402 <h2>Graphic Summary</h2>
1403
1404 <div class=grey>
1405 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
1406
1407 <div class=defline id=defline18>
1408 Mouse-over to show defline and scores, click to show alignments
1409 </div>
1410
1411 <div class=graphic>
1412 <h4 class=darkHeader>Color key for alignment scores</h4>
1413 <div class=legend><div class=graphicrow>
1414 <div class=graphicitem style="background-color: black">&lt;40</div>
1415 <div class=graphicitem style="background-color: blue">40–50</div>
1416 <div class=graphicitem style="background-color: green">50–80</div>
1417 <div class=graphicitem style="background-color: magenta">80–200</div>
1418 <div class=graphicitem style="background-color: red">200≤</div>
1419 </div></div>
1420 <div style="clear: left"></div>
1421
1422 <div class=tablewrapper>
1423
1424 <div class=scale>
1425 <div>query:</div>
1426 <div class=graphicrow>
1427 <div>
1428 <div class=graphicitem style="width: 10.0%">
1429 <div>2</div>
1430 </div>
1431 <div class=graphicitem style="width: 10.0%">
1432 <div>4</div>
1433 </div>
1434 <div class=graphicitem style="width: 10.0%">
1435 <div>6</div>
1436 </div>
1437 <div class=graphicitem style="width: 10.0%">
1438 <div>8</div>
1439 </div>
1440 <div class=graphicitem style="width: 10.0%">
1441 <div>10</div>
1442 </div>
1443 <div class=graphicitem style="width: 10.0%">
1444 <div>12</div>
1445 </div>
1446 <div class=graphicitem style="width: 10.0%">
1447 <div>14</div>
1448 </div>
1449 <div class=graphicitem style="width: 10.0%">
1450 <div>16</div>
1451 </div>
1452 <div class=graphicitem style="width: 10.0%">
1453 <div>18</div>
1454 </div>
1455 <div class=graphicitem style="width: 10.0%">
1456 <div>20</div>
1457 </div>
1458 </div>
1459 </div>
1460 <div style="clear: left"></div>
1461 </div>
1462
1463 <a class=matchresult
1464 href="#hit1"
1465 onmouseover='document.getElementById("defline18").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
1466 onmouseout='document.getElementById("defline18").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1467 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000">
1468 <div class="matchrow graphicrow">
1469 <div class="matchitem graphicitem"
1470 style="background-color: transparent; width: 15.0%"></div>
1471 <div class="matchitem graphicitem"
1472 style="background-color: black; width: 85.0%"></div>
1473 </div>
1474 </a>
1475
1476 </div>
1477 </div>
1478 </div>
1479 </section>
1480
1481
1482
1483 <section class=descriptions>
1484 <h2>Descriptions</h2>
1485
1486 <div class=grey><div class=white>
1487 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1488
1489 <table class=descriptiontable>
1490 <col/><col/><col/><col/><col/><col/><col/>
1491 <tr>
1492 <th>Description</th>
1493 <th>Max score</th>
1494 <th>Total score</th>
1495 <th>Query cover</th>
1496 <th>E value</th>
1497 <th>Ident</th>
1498 <th>Accession</th>
1499 </tr>
1500 <tr>
1501 <td><div><a href="#hit1"
1502 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
1503 id="description1">
1504 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000
1505 </a></div></td>
1506 <td>31.9</td>
1507 <td>31.9</td>
1508 <td>85%</td>
1509 <td>2.981e-06</td>
1510 <td>100%</td>
1511 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">Subject_2</a></td>
1512 </tr>
1513 </table>
1514
1515 </div></div>
1516 </section>
1517
1518
1519
1520 <section class=alignments>
1521 <h2>Alignments</h2>
1522
1523 <div class=grey><div class=white>
1524 <div class=alignment id=hit1>
1525
1526 <div class=linkheader>
1527 <div class=right><a href="#description1">Descriptions</a></div>
1528 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">GenBank</a>
1529 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=graph&amp;log$=nuclalign">Graphics</a>
1530 </div>
1531
1532 <div class=title>
1533 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
1534 <p class=titleinfo>
1535 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">Subject_2</a>
1536 <span class=b>Length:</span> 1045
1537 <span class=b>Number of Matches:</span> 1
1538 </p>
1539 </div>
1540
1541
1542 <div class=hotspot>
1543 <p class=range>
1544 <span class=range>Range 1: 2 to 18</span>
1545 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign&amp;from=2&amp;to=18">GenBank</a>
1546 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=graph&amp;log$=nuclalign&amp;from=2&amp;to=18">Graphics</a>
1547 </p>
1548
1549 <table class=hotspotstable>
1550 <tr>
1551 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1552 </tr>
1553 <tr>
1554 <td>31.9 bits(34)</td>
1555 <td>0.0</td>
1556 <td>17/17(100%)</td>
1557 <td>0/17(0%)</td>
1558 <td>Plus/Plus</td>
1559 </tr>
1560 </table>
1561
1562 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
1563 |||||||||||||||||
1564 Subject 2 GCGCGGTGTCATCTATG 18</pre>
1565 </div>
1566
1567 </div>
1568
1569 </div></div>
1570 </section>
1571 </section>
1572
1573 <section class=match id=match19>
1574
1575 <h1>Nucleotide Sequence (20 letters)</h1>
1576
1577 <section class=header>
1578
1579 <table class=headerdata>
1580 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1581 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1582 <tr><td class=param>Query length:</td><td>20</td></tr>
1583 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1584 <tr><td class=param>Database:</td><td></td></tr>
1585 </table>
1586
1587 </section>
1588
1589
1590 <section class=graphics>
1591 <h2>Graphic Summary</h2>
1592
1593 <div class=grey>
1594 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
1595
1596 <div class=defline id=defline19>
1597 Mouse-over to show defline and scores, click to show alignments
1598 </div>
1599
1600 <div class=graphic>
1601 <h4 class=darkHeader>Color key for alignment scores</h4>
1602 <div class=legend><div class=graphicrow>
1603 <div class=graphicitem style="background-color: black">&lt;40</div>
1604 <div class=graphicitem style="background-color: blue">40–50</div>
1605 <div class=graphicitem style="background-color: green">50–80</div>
1606 <div class=graphicitem style="background-color: magenta">80–200</div>
1607 <div class=graphicitem style="background-color: red">200≤</div>
1608 </div></div>
1609 <div style="clear: left"></div>
1610
1611 <div class=tablewrapper>
1612
1613 <div class=scale>
1614 <div>query:</div>
1615 <div class=graphicrow>
1616 <div>
1617 <div class=graphicitem style="width: 10.0%">
1618 <div>2</div>
1619 </div>
1620 <div class=graphicitem style="width: 10.0%">
1621 <div>4</div>
1622 </div>
1623 <div class=graphicitem style="width: 10.0%">
1624 <div>6</div>
1625 </div>
1626 <div class=graphicitem style="width: 10.0%">
1627 <div>8</div>
1628 </div>
1629 <div class=graphicitem style="width: 10.0%">
1630 <div>10</div>
1631 </div>
1632 <div class=graphicitem style="width: 10.0%">
1633 <div>12</div>
1634 </div>
1635 <div class=graphicitem style="width: 10.0%">
1636 <div>14</div>
1637 </div>
1638 <div class=graphicitem style="width: 10.0%">
1639 <div>16</div>
1640 </div>
1641 <div class=graphicitem style="width: 10.0%">
1642 <div>18</div>
1643 </div>
1644 <div class=graphicitem style="width: 10.0%">
1645 <div>20</div>
1646 </div>
1647 </div>
1648 </div>
1649 <div style="clear: left"></div>
1650 </div>
1651
1652 <a class=matchresult
1653 href="#hit1"
1654 onmouseover='document.getElementById("defline19").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
1655 onmouseout='document.getElementById("defline19").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1656 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
1657 <div class="matchrow graphicrow">
1658 <div class="matchitem graphicitem"
1659 style="background-color: black; width: 100.0%"></div>
1660 </div>
1661 </a>
1662
1663 </div>
1664 </div>
1665 </div>
1666 </section>
1667
1668
1669
1670 <section class=descriptions>
1671 <h2>Descriptions</h2>
1672
1673 <div class=grey><div class=white>
1674 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1675
1676 <table class=descriptiontable>
1677 <col/><col/><col/><col/><col/><col/><col/>
1678 <tr>
1679 <th>Description</th>
1680 <th>Max score</th>
1681 <th>Total score</th>
1682 <th>Query cover</th>
1683 <th>E value</th>
1684 <th>Ident</th>
1685 <th>Accession</th>
1686 </tr>
1687 <tr>
1688 <td><div><a href="#hit1"
1689 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
1690 id="description1">
1691 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
1692 </a></div></td>
1693 <td>37.4</td>
1694 <td>37.4</td>
1695 <td>100%</td>
1696 <td>7.011e-08</td>
1697 <td>100%</td>
1698 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a></td>
1699 </tr>
1700 </table>
1701
1702 </div></div>
1703 </section>
1704
1705
1706
1707 <section class=alignments>
1708 <h2>Alignments</h2>
1709
1710 <div class=grey><div class=white>
1711 <div class=alignment id=hit1>
1712
1713 <div class=linkheader>
1714 <div class=right><a href="#description1">Descriptions</a></div>
1715 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">GenBank</a>
1716 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&amp;log$=nuclalign">Graphics</a>
1717 </div>
1718
1719 <div class=title>
1720 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
1721 <p class=titleinfo>
1722 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a>
1723 <span class=b>Length:</span> 323
1724 <span class=b>Number of Matches:</span> 1
1725 </p>
1726 </div>
1727
1728
1729 <div class=hotspot>
1730 <p class=range>
1731 <span class=range>Range 1: 224 to 243</span>
1732 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign&amp;from=224&amp;to=243">GenBank</a>
1733 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&amp;log$=nuclalign&amp;from=224&amp;to=243">Graphics</a>
1734 </p>
1735
1736 <table class=hotspotstable>
1737 <tr>
1738 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1739 </tr>
1740 <tr>
1741 <td>37.4 bits(40)</td>
1742 <td>0.0</td>
1743 <td>20/20(100%)</td>
1744 <td>0/20(0%)</td>
1745 <td>Plus/Plus</td>
1746 </tr>
1747 </table>
1748
1749 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
1750 ||||||||||||||||||||
1751 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
1752 </div>
1753
1754 </div>
1755
1756 </div></div>
1757 </section>
1758 </section>
1759
1760 <section class=match id=match20>
1761
1762 <h1>Nucleotide Sequence (20 letters)</h1>
1763
1764 <section class=header>
1765
1766 <table class=headerdata>
1767 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1768 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1769 <tr><td class=param>Query length:</td><td>20</td></tr>
1770 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1771 <tr><td class=param>Database:</td><td></td></tr>
1772 </table>
1773
1774 </section>
1775
1776 <section>
1777 <h2>No Hits</h2>
1778 <div class=grey>
1779 <table class=headerdata>
1780 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1781 </table>
1782 </div>
1783 </section>
1784 </section>
1785
1786 <section class=match id=match21>
1787
1788 <h1>Nucleotide Sequence (20 letters)</h1>
1789
1790 <section class=header>
1791
1792 <table class=headerdata>
1793 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1794 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1795 <tr><td class=param>Query length:</td><td>20</td></tr>
1796 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1797 <tr><td class=param>Database:</td><td></td></tr>
1798 </table>
1799
1800 </section>
1801
1802 <section>
1803 <h2>No Hits</h2>
1804 <div class=grey>
1805 <table class=headerdata>
1806 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1807 </table>
1808 </div>
1809 </section>
1810 </section>
1811
1812 <section class=match id=match22>
1813
1814 <h1>Nucleotide Sequence (20 letters)</h1>
1815
1816 <section class=header>
1817
1818 <table class=headerdata>
1819 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1820 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1821 <tr><td class=param>Query length:</td><td>20</td></tr>
1822 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1823 <tr><td class=param>Database:</td><td></td></tr>
1824 </table>
1825
1826 </section>
1827
1828
1829 <section class=graphics>
1830 <h2>Graphic Summary</h2>
1831
1832 <div class=grey>
1833 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
1834
1835 <div class=defline id=defline22>
1836 Mouse-over to show defline and scores, click to show alignments
1837 </div>
1838
1839 <div class=graphic>
1840 <h4 class=darkHeader>Color key for alignment scores</h4>
1841 <div class=legend><div class=graphicrow>
1842 <div class=graphicitem style="background-color: black">&lt;40</div>
1843 <div class=graphicitem style="background-color: blue">40–50</div>
1844 <div class=graphicitem style="background-color: green">50–80</div>
1845 <div class=graphicitem style="background-color: magenta">80–200</div>
1846 <div class=graphicitem style="background-color: red">200≤</div>
1847 </div></div>
1848 <div style="clear: left"></div>
1849
1850 <div class=tablewrapper>
1851
1852 <div class=scale>
1853 <div>query:</div>
1854 <div class=graphicrow>
1855 <div>
1856 <div class=graphicitem style="width: 10.0%">
1857 <div>2</div>
1858 </div>
1859 <div class=graphicitem style="width: 10.0%">
1860 <div>4</div>
1861 </div>
1862 <div class=graphicitem style="width: 10.0%">
1863 <div>6</div>
1864 </div>
1865 <div class=graphicitem style="width: 10.0%">
1866 <div>8</div>
1867 </div>
1868 <div class=graphicitem style="width: 10.0%">
1869 <div>10</div>
1870 </div>
1871 <div class=graphicitem style="width: 10.0%">
1872 <div>12</div>
1873 </div>
1874 <div class=graphicitem style="width: 10.0%">
1875 <div>14</div>
1876 </div>
1877 <div class=graphicitem style="width: 10.0%">
1878 <div>16</div>
1879 </div>
1880 <div class=graphicitem style="width: 10.0%">
1881 <div>18</div>
1882 </div>
1883 <div class=graphicitem style="width: 10.0%">
1884 <div>20</div>
1885 </div>
1886 </div>
1887 </div>
1888 <div style="clear: left"></div>
1889 </div>
1890
1891 <a class=matchresult
1892 href="#hit1"
1893 onmouseover='document.getElementById("defline22").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
1894 onmouseout='document.getElementById("defline22").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1895 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
1896 <div class="matchrow graphicrow">
1897 <div class="matchitem graphicitem"
1898 style="background-color: black; width: 100.0%"></div>
1899 </div>
1900 </a>
1901
1902 </div>
1903 </div>
1904 </div>
1905 </section>
1906
1907
1908
1909 <section class=descriptions>
1910 <h2>Descriptions</h2>
1911
1912 <div class=grey><div class=white>
1913 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1914
1915 <table class=descriptiontable>
1916 <col/><col/><col/><col/><col/><col/><col/>
1917 <tr>
1918 <th>Description</th>
1919 <th>Max score</th>
1920 <th>Total score</th>
1921 <th>Query cover</th>
1922 <th>E value</th>
1923 <th>Ident</th>
1924 <th>Accession</th>
1925 </tr>
1926 <tr>
1927 <td><div><a href="#hit1"
1928 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
1929 id="description1">
1930 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
1931 </a></div></td>
1932 <td>37.4</td>
1933 <td>37.4</td>
1934 <td>100%</td>
1935 <td>7.011e-08</td>
1936 <td>100%</td>
1937 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a></td>
1938 </tr>
1939 </table>
1940
1941 </div></div>
1942 </section>
1943
1944
1945
1946 <section class=alignments>
1947 <h2>Alignments</h2>
1948
1949 <div class=grey><div class=white>
1950 <div class=alignment id=hit1>
1951
1952 <div class=linkheader>
1953 <div class=right><a href="#description1">Descriptions</a></div>
1954 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">GenBank</a>
1955 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&amp;log$=nuclalign">Graphics</a>
1956 </div>
1957
1958 <div class=title>
1959 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
1960 <p class=titleinfo>
1961 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a>
1962 <span class=b>Length:</span> 2457
1963 <span class=b>Number of Matches:</span> 1
1964 </p>
1965 </div>
1966
1967
1968 <div class=hotspot>
1969 <p class=range>
1970 <span class=range>Range 1: 2143 to 2162</span>
1971 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign&amp;from=2143&amp;to=2162">GenBank</a>
1972 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&amp;log$=nuclalign&amp;from=2143&amp;to=2162">Graphics</a>
1973 </p>
1974
1975 <table class=hotspotstable>
1976 <tr>
1977 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1978 </tr>
1979 <tr>
1980 <td>37.4 bits(40)</td>
1981 <td>0.0</td>
1982 <td>20/20(100%)</td>
1983 <td>0/20(0%)</td>
1984 <td>Plus/Plus</td>
1985 </tr>
1986 </table>
1987
1988 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
1989 ||||||||||||||||||||
1990 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
1991 </div>
1992
1993 </div>
1994
1995 </div></div>
1996 </section>
1997 </section>
1998
1999 <section class=match id=match23>
2000
2001 <h1>Nucleotide Sequence (20 letters)</h1>
2002
2003 <section class=header>
2004
2005 <table class=headerdata>
2006 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2007 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2008 <tr><td class=param>Query length:</td><td>20</td></tr>
2009 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2010 <tr><td class=param>Database:</td><td></td></tr>
2011 </table>
2012
2013 </section>
2014
2015 <section>
2016 <h2>No Hits</h2>
2017 <div class=grey>
2018 <table class=headerdata>
2019 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2020 </table>
2021 </div>
2022 </section>
2023 </section>
2024
2025 <section class=match id=match24>
2026
2027 <h1>Nucleotide Sequence (20 letters)</h1>
2028
2029 <section class=header>
2030
2031 <table class=headerdata>
2032 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2033 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2034 <tr><td class=param>Query length:</td><td>20</td></tr>
2035 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2036 <tr><td class=param>Database:</td><td></td></tr>
2037 </table>
2038
2039 </section>
2040
2041 <section>
2042 <h2>No Hits</h2>
2043 <div class=grey>
2044 <table class=headerdata>
2045 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2046 </table>
2047 </div>
2048 </section>
2049 </section>
2050
2051 <section class=match id=match25>
2052
2053 <h1>Nucleotide Sequence (24 letters)</h1>
2054
2055 <section class=header>
2056
2057 <table class=headerdata>
2058 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2059 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2060 <tr><td class=param>Query length:</td><td>20</td></tr>
2061 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2062 <tr><td class=param>Database:</td><td></td></tr>
2063 </table>
2064
2065 </section>
2066
2067 <section>
2068 <h2>No Hits</h2>
2069 <div class=grey>
2070 <table class=headerdata>
2071 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2072 </table>
2073 </div>
2074 </section>
2075 </section>
2076
2077 <section class=match id=match26>
2078
2079 <h1>Nucleotide Sequence (24 letters)</h1>
2080
2081 <section class=header>
2082
2083 <table class=headerdata>
2084 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2085 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2086 <tr><td class=param>Query length:</td><td>20</td></tr>
2087 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2088 <tr><td class=param>Database:</td><td></td></tr>
2089 </table>
2090
2091 </section>
2092
2093 <section>
2094 <h2>No Hits</h2>
2095 <div class=grey>
2096 <table class=headerdata>
2097 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2098 </table>
2099 </div>
2100 </section>
2101 </section>
2102
2103 <section class=match id=match27>
2104
2105 <h1>Nucleotide Sequence (24 letters)</h1>
2106
2107 <section class=header>
2108
2109 <table class=headerdata>
2110 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2111 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2112 <tr><td class=param>Query length:</td><td>20</td></tr>
2113 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2114 <tr><td class=param>Database:</td><td></td></tr>
2115 </table>
2116
2117 </section>
2118
2119 <section>
2120 <h2>No Hits</h2>
2121 <div class=grey>
2122 <table class=headerdata>
2123 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2124 </table>
2125 </div>
2126 </section>
2127 </section>
2128
2129 <section class=match id=match28>
2130
2131 <h1>Nucleotide Sequence (24 letters)</h1>
2132
2133 <section class=header>
2134
2135 <table class=headerdata>
2136 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2137 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2138 <tr><td class=param>Query length:</td><td>20</td></tr>
2139 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2140 <tr><td class=param>Database:</td><td></td></tr>
2141 </table>
2142
2143 </section>
2144
2145 <section>
2146 <h2>No Hits</h2>
2147 <div class=grey>
2148 <table class=headerdata>
2149 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2150 </table>
2151 </div>
2152 </section>
2153 </section>
2154
2155 <section class=match id=match29>
2156
2157 <h1>Nucleotide Sequence (24 letters)</h1>
2158
2159 <section class=header>
2160
2161 <table class=headerdata>
2162 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2163 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2164 <tr><td class=param>Query length:</td><td>20</td></tr>
2165 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2166 <tr><td class=param>Database:</td><td></td></tr>
2167 </table>
2168
2169 </section>
2170
2171 <section>
2172 <h2>No Hits</h2>
2173 <div class=grey>
2174 <table class=headerdata>
2175 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2176 </table>
2177 </div>
2178 </section>
2179 </section>
2180
2181 <section class=match id=match30>
2182
2183 <h1>Nucleotide Sequence (24 letters)</h1>
2184
2185 <section class=header>
2186
2187 <table class=headerdata>
2188 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2189 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2190 <tr><td class=param>Query length:</td><td>20</td></tr>
2191 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2192 <tr><td class=param>Database:</td><td></td></tr>
2193 </table>
2194
2195 </section>
2196
2197 <section>
2198 <h2>No Hits</h2>
2199 <div class=grey>
2200 <table class=headerdata>
2201 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2202 </table>
2203 </div>
2204 </section>
2205 </section>
2206
2207 <section class=match id=match31>
2208
2209 <h1>Nucleotide Sequence (24 letters)</h1>
2210
2211 <section class=header>
2212
2213 <table class=headerdata>
2214 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2215 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2216 <tr><td class=param>Query length:</td><td>20</td></tr>
2217 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2218 <tr><td class=param>Database:</td><td></td></tr>
2219 </table>
2220
2221 </section>
2222
2223 <section>
2224 <h2>No Hits</h2>
2225 <div class=grey>
2226 <table class=headerdata>
2227 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2228 </table>
2229 </div>
2230 </section>
2231 </section>
2232
2233 <section class=match id=match32>
2234
2235 <h1>Nucleotide Sequence (24 letters)</h1>
2236
2237 <section class=header>
2238
2239 <table class=headerdata>
2240 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2241 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2242 <tr><td class=param>Query length:</td><td>20</td></tr>
2243 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2244 <tr><td class=param>Database:</td><td></td></tr>
2245 </table>
2246
2247 </section>
2248
2249 <section>
2250 <h2>No Hits</h2>
2251 <div class=grey>
2252 <table class=headerdata>
2253 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2254 </table>
2255 </div>
2256 </section>
2257 </section>
2258
2259 <section class=match id=match33>
2260
2261 <h1>Nucleotide Sequence (20 letters)</h1>
2262
2263 <section class=header>
2264
2265 <table class=headerdata>
2266 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2267 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2268 <tr><td class=param>Query length:</td><td>20</td></tr>
2269 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2270 <tr><td class=param>Database:</td><td></td></tr>
2271 </table>
2272
2273 </section>
2274
2275 <section>
2276 <h2>No Hits</h2>
2277 <div class=grey>
2278 <table class=headerdata>
2279 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2280 </table>
2281 </div>
2282 </section>
2283 </section>
2284
2285 <section class=match id=match34>
2286
2287 <h1>Nucleotide Sequence (20 letters)</h1>
2288
2289 <section class=header>
2290
2291 <table class=headerdata>
2292 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2293 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2294 <tr><td class=param>Query length:</td><td>20</td></tr>
2295 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2296 <tr><td class=param>Database:</td><td></td></tr>
2297 </table>
2298
2299 </section>
2300
2301 <section>
2302 <h2>No Hits</h2>
2303 <div class=grey>
2304 <table class=headerdata>
2305 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2306 </table>
2307 </div>
2308 </section>
2309 </section>
2310
2311 <section class=match id=match35>
2312
2313 <h1>Nucleotide Sequence (20 letters)</h1>
2314
2315 <section class=header>
2316
2317 <table class=headerdata>
2318 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2319 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2320 <tr><td class=param>Query length:</td><td>20</td></tr>
2321 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2322 <tr><td class=param>Database:</td><td></td></tr>
2323 </table>
2324
2325 </section>
2326
2327 <section>
2328 <h2>No Hits</h2>
2329 <div class=grey>
2330 <table class=headerdata>
2331 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2332 </table>
2333 </div>
2334 </section>
2335 </section>
2336
2337 <section class=match id=match36>
2338
2339 <h1>Nucleotide Sequence (20 letters)</h1>
2340
2341 <section class=header>
2342
2343 <table class=headerdata>
2344 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2345 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2346 <tr><td class=param>Query length:</td><td>20</td></tr>
2347 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2348 <tr><td class=param>Database:</td><td></td></tr>
2349 </table>
2350
2351 </section>
2352
2353 <section>
2354 <h2>No Hits</h2>
2355 <div class=grey>
2356 <table class=headerdata>
2357 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2358 </table>
2359 </div>
2360 </section>
2361 </section>
2362
2363 <section class=match id=match37>
2364
2365 <h1>Nucleotide Sequence (20 letters)</h1>
2366
2367 <section class=header>
2368
2369 <table class=headerdata>
2370 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2371 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2372 <tr><td class=param>Query length:</td><td>20</td></tr>
2373 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2374 <tr><td class=param>Database:</td><td></td></tr>
2375 </table>
2376
2377 </section>
2378
2379 <section>
2380 <h2>No Hits</h2>
2381 <div class=grey>
2382 <table class=headerdata>
2383 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2384 </table>
2385 </div>
2386 </section>
2387 </section>
2388
2389 <section class=match id=match38>
2390
2391 <h1>Nucleotide Sequence (20 letters)</h1>
2392
2393 <section class=header>
2394
2395 <table class=headerdata>
2396 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2397 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2398 <tr><td class=param>Query length:</td><td>20</td></tr>
2399 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2400 <tr><td class=param>Database:</td><td></td></tr>
2401 </table>
2402
2403 </section>
2404
2405 <section>
2406 <h2>No Hits</h2>
2407 <div class=grey>
2408 <table class=headerdata>
2409 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2410 </table>
2411 </div>
2412 </section>
2413 </section>
2414
2415 <section class=match id=match39>
2416
2417 <h1>Nucleotide Sequence (20 letters)</h1>
2418
2419 <section class=header>
2420
2421 <table class=headerdata>
2422 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2423 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2424 <tr><td class=param>Query length:</td><td>20</td></tr>
2425 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2426 <tr><td class=param>Database:</td><td></td></tr>
2427 </table>
2428
2429 </section>
2430
2431 <section>
2432 <h2>No Hits</h2>
2433 <div class=grey>
2434 <table class=headerdata>
2435 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2436 </table>
2437 </div>
2438 </section>
2439 </section>
2440
2441 <section class=match id=match40>
2442
2443 <h1>Nucleotide Sequence (20 letters)</h1>
2444
2445 <section class=header>
2446
2447 <table class=headerdata>
2448 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2449 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2450 <tr><td class=param>Query length:</td><td>20</td></tr>
2451 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2452 <tr><td class=param>Database:</td><td></td></tr>
2453 </table>
2454
2455 </section>
2456
2457 <section>
2458 <h2>No Hits</h2>
2459 <div class=grey>
2460 <table class=headerdata>
2461 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2462 </table>
2463 </div>
2464 </section>
2465 </section>
2466
2467 <section class=match id=match41>
2468
2469 <h1>Nucleotide Sequence (25 letters)</h1>
2470
2471 <section class=header>
2472
2473 <table class=headerdata>
2474 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2475 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2476 <tr><td class=param>Query length:</td><td>20</td></tr>
2477 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2478 <tr><td class=param>Database:</td><td></td></tr>
2479 </table>
2480
2481 </section>
2482
2483 <section>
2484 <h2>No Hits</h2>
2485 <div class=grey>
2486 <table class=headerdata>
2487 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2488 </table>
2489 </div>
2490 </section>
2491 </section>
2492
2493 <section class=match id=match42>
2494
2495 <h1>Nucleotide Sequence (25 letters)</h1>
2496
2497 <section class=header>
2498
2499 <table class=headerdata>
2500 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2501 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2502 <tr><td class=param>Query length:</td><td>20</td></tr>
2503 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2504 <tr><td class=param>Database:</td><td></td></tr>
2505 </table>
2506
2507 </section>
2508
2509 <section>
2510 <h2>No Hits</h2>
2511 <div class=grey>
2512 <table class=headerdata>
2513 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2514 </table>
2515 </div>
2516 </section>
2517 </section>
2518
2519 <section class=match id=match43>
2520
2521 <h1>Nucleotide Sequence (25 letters)</h1>
2522
2523 <section class=header>
2524
2525 <table class=headerdata>
2526 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2527 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2528 <tr><td class=param>Query length:</td><td>20</td></tr>
2529 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2530 <tr><td class=param>Database:</td><td></td></tr>
2531 </table>
2532
2533 </section>
2534
2535 <section>
2536 <h2>No Hits</h2>
2537 <div class=grey>
2538 <table class=headerdata>
2539 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2540 </table>
2541 </div>
2542 </section>
2543 </section>
2544
2545 <section class=match id=match44>
2546
2547 <h1>Nucleotide Sequence (25 letters)</h1>
2548
2549 <section class=header>
2550
2551 <table class=headerdata>
2552 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2553 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2554 <tr><td class=param>Query length:</td><td>20</td></tr>
2555 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2556 <tr><td class=param>Database:</td><td></td></tr>
2557 </table>
2558
2559 </section>
2560
2561 <section>
2562 <h2>No Hits</h2>
2563 <div class=grey>
2564 <table class=headerdata>
2565 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2566 </table>
2567 </div>
2568 </section>
2569 </section>
2570
2571 <section class=match id=match45>
2572
2573 <h1>Nucleotide Sequence (25 letters)</h1>
2574
2575 <section class=header>
2576
2577 <table class=headerdata>
2578 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2579 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2580 <tr><td class=param>Query length:</td><td>20</td></tr>
2581 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2582 <tr><td class=param>Database:</td><td></td></tr>
2583 </table>
2584
2585 </section>
2586
2587 <section>
2588 <h2>No Hits</h2>
2589 <div class=grey>
2590 <table class=headerdata>
2591 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2592 </table>
2593 </div>
2594 </section>
2595 </section>
2596
2597 <section class=match id=match46>
2598
2599 <h1>Nucleotide Sequence (25 letters)</h1>
2600
2601 <section class=header>
2602
2603 <table class=headerdata>
2604 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2605 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2606 <tr><td class=param>Query length:</td><td>20</td></tr>
2607 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2608 <tr><td class=param>Database:</td><td></td></tr>
2609 </table>
2610
2611 </section>
2612
2613 <section>
2614 <h2>No Hits</h2>
2615 <div class=grey>
2616 <table class=headerdata>
2617 <tr><td class=param>Message:</td><td>No hits found</td></tr>
2618 </table>
2619 </div>
2620 </section>
2621 </section>
2622
2623 <section class=match id=match47>
2624
2625 <h1>Nucleotide Sequence (25 letters)</h1>
2626
2627 <section class=header>
2628
2629 <table class=headerdata>
2630 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2631 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2632 <tr><td class=param>Query length:</td><td>20</td></tr>
2633 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2634 <tr><td class=param>Database:</td><td></td></tr>
2635 </table>
2636
2637 </section>
2638
2639
2640 <section class=graphics>
2641 <h2>Graphic Summary</h2>
2642
2643 <div class=grey>
2644 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
2645
2646 <div class=defline id=defline47>
2647 Mouse-over to show defline and scores, click to show alignments
2648 </div>
2649
2650 <div class=graphic>
2651 <h4 class=darkHeader>Color key for alignment scores</h4>
2652 <div class=legend><div class=graphicrow>
2653 <div class=graphicitem style="background-color: black">&lt;40</div>
2654 <div class=graphicitem style="background-color: blue">40–50</div>
2655 <div class=graphicitem style="background-color: green">50–80</div>
2656 <div class=graphicitem style="background-color: magenta">80–200</div>
2657 <div class=graphicitem style="background-color: red">200≤</div>
2658 </div></div>
2659 <div style="clear: left"></div>
2660
2661 <div class=tablewrapper>
2662
2663 <div class=scale>
2664 <div>query:</div>
2665 <div class=graphicrow>
2666 <div>
2667 <div class=graphicitem style="width: 12.0%">
2668 <div>3</div>
2669 </div>
2670 <div class=graphicitem style="width: 12.0%">
2671 <div>6</div>
2672 </div>
2673 <div class=graphicitem style="width: 12.0%">
2674 <div>9</div>
2675 </div>
2676 <div class=graphicitem style="width: 12.0%">
2677 <div>12</div>
2678 </div>
2679 <div class=graphicitem style="width: 12.0%">
2680 <div>15</div>
2681 </div>
2682 <div class=graphicitem style="width: 12.0%">
2683 <div>18</div>
2684 </div>
2685 <div class=graphicitem style="width: 12.0%">
2686 <div>21</div>
2687 </div>
2688 <div class=graphicitem style="width: 12.0%">
2689 <div>24</div>
2690 </div>
2691 <div class=graphicitem style="width: 4.0%">
2692 <div>25</div>
2693 </div>
2694 </div>
2695 </div>
2696 <div style="clear: left"></div>
2697 </div>
2698
2699 <a class=matchresult
2700 href="#hit1"
2701 onmouseover='document.getElementById("defline47").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
2702 onmouseout='document.getElementById("defline47").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
2703 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
2704 <div class="matchrow graphicrow">
2705 <div class="matchitem graphicitem"
2706 style="background-color: black; width: 100.0%"></div>
2707 </div>
2708 </a>
2709
2710 </div>
2711 </div>
2712 </div>
2713 </section>
2714
2715
2716
2717 <section class=descriptions>
2718 <h2>Descriptions</h2>
2719
2720 <div class=grey><div class=white>
2721 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
2722
2723 <table class=descriptiontable>
2724 <col/><col/><col/><col/><col/><col/><col/>
2725 <tr>
2726 <th>Description</th>
2727 <th>Max score</th>
2728 <th>Total score</th>
2729 <th>Query cover</th>
2730 <th>E value</th>
2731 <th>Ident</th>
2732 <th>Accession</th>
2733 </tr>
2734 <tr>
2735 <td><div><a href="#hit1"
2736 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
2737 id="description1">
2738 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
2739 </a></div></td>
2740 <td>37.4</td>
2741 <td>37.4</td>
2742 <td>100%</td>
2743 <td>9.338e-08</td>
2744 <td>92%</td>
2745 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a></td>
2746 </tr>
2747 </table>
2748
2749 </div></div>
2750 </section>
2751
2752
2753
2754 <section class=alignments>
2755 <h2>Alignments</h2>
2756
2757 <div class=grey><div class=white>
2758 <div class=alignment id=hit1>
2759
2760 <div class=linkheader>
2761 <div class=right><a href="#description1">Descriptions</a></div>
2762 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">GenBank</a>
2763 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&amp;log$=nuclalign">Graphics</a>
2764 </div>
2765
2766 <div class=title>
2767 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
2768 <p class=titleinfo>
2769 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a>
2770 <span class=b>Length:</span> 4180
2771 <span class=b>Number of Matches:</span> 1
2772 </p>
2773 </div>
2774
2775
2776 <div class=hotspot>
2777 <p class=range>
2778 <span class=range>Range 1: 1541 to 1565</span>
2779 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign&amp;from=1541&amp;to=1565">GenBank</a>
2780 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&amp;log$=nuclalign&amp;from=1541&amp;to=1565">Graphics</a>
2781 </p>
2782
2783 <table class=hotspotstable>
2784 <tr>
2785 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
2786 </tr>
2787 <tr>
2788 <td>37.4 bits(40)</td>
2789 <td>0.0</td>
2790 <td>23/25(92%)</td>
2791 <td>0/25(0%)</td>
2792 <td>Plus/Plus</td>
2793 </tr>
2794 </table>
2795
2796 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
2797 |||||||||||||| ||||||| ||
2798 Subject 1541 ACATGAACAGCGCCCTGACCACCGC 1565</pre>
2799 </div>
2800
2801 </div>
2802
2803 </div></div>
2804 </section>
2805 </section>
2806
2807 <section class=match id=match48>
2808
2809 <h1>Nucleotide Sequence (25 letters)</h1>
2810
2811 <section class=header>
2812
2813 <table class=headerdata>
2814 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2815 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
2816 <tr><td class=param>Query length:</td><td>20</td></tr>
2817 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
2818 <tr><td class=param>Database:</td><td></td></tr>
2819 </table>
2820
2821 </section>
2822
2823
2824 <section class=graphics>
2825 <h2>Graphic Summary</h2>
2826
2827 <div class=grey>
2828 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
2829
2830 <div class=defline id=defline48>
2831 Mouse-over to show defline and scores, click to show alignments
2832 </div>
2833
2834 <div class=graphic>
2835 <h4 class=darkHeader>Color key for alignment scores</h4>
2836 <div class=legend><div class=graphicrow>
2837 <div class=graphicitem style="background-color: black">&lt;40</div>
2838 <div class=graphicitem style="background-color: blue">40–50</div>
2839 <div class=graphicitem style="background-color: green">50–80</div>
2840 <div class=graphicitem style="background-color: magenta">80–200</div>
2841 <div class=graphicitem style="background-color: red">200≤</div>
2842 </div></div>
2843 <div style="clear: left"></div>
2844
2845 <div class=tablewrapper>
2846
2847 <div class=scale>
2848 <div>query:</div>
2849 <div class=graphicrow>
2850 <div>
2851 <div class=graphicitem style="width: 12.0%">
2852 <div>3</div>
2853 </div>
2854 <div class=graphicitem style="width: 12.0%">
2855 <div>6</div>
2856 </div>
2857 <div class=graphicitem style="width: 12.0%">
2858 <div>9</div>
2859 </div>
2860 <div class=graphicitem style="width: 12.0%">
2861 <div>12</div>
2862 </div>
2863 <div class=graphicitem style="width: 12.0%">
2864 <div>15</div>
2865 </div>
2866 <div class=graphicitem style="width: 12.0%">
2867 <div>18</div>
2868 </div>
2869 <div class=graphicitem style="width: 12.0%">
2870 <div>21</div>
2871 </div>
2872 <div class=graphicitem style="width: 12.0%">
2873 <div>24</div>
2874 </div>
2875 <div class=graphicitem style="width: 4.0%">
2876 <div>25</div>
2877 </div>
2878 </div>
2879 </div>
2880 <div style="clear: left"></div>
2881 </div>
2882
2883 <a class=matchresult
2884 href="#hit1"
2885 onmouseover='document.getElementById("defline48").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
2886 onmouseout='document.getElementById("defline48").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
2887 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
2888 <div class="matchrow graphicrow">
2889 <div class="matchitem graphicitem"
2890 style="background-color: black; width: 100.0%"></div>
2891 </div>
2892 </a>
2893
2894 </div>
2895 </div>
2896 </div>
2897 </section>
2898
2899
2900
2901 <section class=descriptions>
2902 <h2>Descriptions</h2>
2903
2904 <div class=grey><div class=white>
2905 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
2906
2907 <table class=descriptiontable>
2908 <col/><col/><col/><col/><col/><col/><col/>
2909 <tr>
2910 <th>Description</th>
2911 <th>Max score</th>
2912 <th>Total score</th>
2913 <th>Query cover</th>
2914 <th>E value</th>
2915 <th>Ident</th>
2916 <th>Accession</th>
2917 </tr>
2918 <tr>
2919 <td><div><a href="#hit1"
2920 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
2921 id="description1">
2922 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
2923 </a></div></td>
2924 <td>37.4</td>
2925 <td>37.4</td>
2926 <td>100%</td>
2927 <td>9.338e-08</td>
2928 <td>92%</td>
2929 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a></td>
2930 </tr>
2931 </table>
2932
2933 </div></div>
2934 </section>
2935
2936
2937
2938 <section class=alignments>
2939 <h2>Alignments</h2>
2940
2941 <div class=grey><div class=white>
2942 <div class=alignment id=hit1>
2943
2944 <div class=linkheader>
2945 <div class=right><a href="#description1">Descriptions</a></div>
2946 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">GenBank</a>
2947 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&amp;log$=nuclalign">Graphics</a>
2948 </div>
2949
2950 <div class=title>
2951 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
2952 <p class=titleinfo>
2953 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a>
2954 <span class=b>Length:</span> 4983
2955 <span class=b>Number of Matches:</span> 1
2956 </p>
2957 </div>
2958
2959
2960 <div class=hotspot>
2961 <p class=range>
2962 <span class=range>Range 1: 2344 to 2368</span>
2963 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign&amp;from=2344&amp;to=2368">GenBank</a>
2964 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&amp;log$=nuclalign&amp;from=2344&amp;to=2368">Graphics</a>
2965 </p>
2966
2967 <table class=hotspotstable>
2968 <tr>
2969 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
2970 </tr>
2971 <tr>
2972 <td>37.4 bits(40)</td>
2973 <td>0.0</td>
2974 <td>23/25(92%)</td>
2975 <td>0/25(0%)</td>
2976 <td>Plus/Plus</td>
2977 </tr>
2978 </table>
2979
2980 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
2981 |||||||||||||| ||||||| ||
2982 Subject 2344 ACATGAACAGCGCCCTGACCACCGC 2368</pre>
2983 </div>
2984
2985 </div>
2986
2987 </div></div>
2988 </section>
2989 </section>
2990
2991 <section class=match id=match49>
2992
2993 <h1>Nucleotide Sequence (74 letters)</h1>
2994
2995 <section class=header>
2996
2997 <table class=headerdata>
2998 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
2999 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3000 <tr><td class=param>Query length:</td><td>20</td></tr>
3001 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3002 <tr><td class=param>Database:</td><td></td></tr>
3003 </table>
3004
3005 </section>
3006
3007 <section>
3008 <h2>No Hits</h2>
3009 <div class=grey>
3010 <table class=headerdata>
3011 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3012 </table>
3013 </div>
3014 </section>
3015 </section>
3016
3017 <section class=match id=match50>
3018
3019 <h1>Nucleotide Sequence (74 letters)</h1>
3020
3021 <section class=header>
3022
3023 <table class=headerdata>
3024 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3025 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3026 <tr><td class=param>Query length:</td><td>20</td></tr>
3027 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3028 <tr><td class=param>Database:</td><td></td></tr>
3029 </table>
3030
3031 </section>
3032
3033 <section>
3034 <h2>No Hits</h2>
3035 <div class=grey>
3036 <table class=headerdata>
3037 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3038 </table>
3039 </div>
3040 </section>
3041 </section>
3042
3043 <section class=match id=match51>
3044
3045 <h1>Nucleotide Sequence (74 letters)</h1>
3046
3047 <section class=header>
3048
3049 <table class=headerdata>
3050 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3051 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3052 <tr><td class=param>Query length:</td><td>20</td></tr>
3053 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3054 <tr><td class=param>Database:</td><td></td></tr>
3055 </table>
3056
3057 </section>
3058
3059 <section>
3060 <h2>No Hits</h2>
3061 <div class=grey>
3062 <table class=headerdata>
3063 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3064 </table>
3065 </div>
3066 </section>
3067 </section>
3068
3069 <section class=match id=match52>
3070
3071 <h1>Nucleotide Sequence (74 letters)</h1>
3072
3073 <section class=header>
3074
3075 <table class=headerdata>
3076 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3077 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3078 <tr><td class=param>Query length:</td><td>20</td></tr>
3079 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3080 <tr><td class=param>Database:</td><td></td></tr>
3081 </table>
3082
3083 </section>
3084
3085 <section>
3086 <h2>No Hits</h2>
3087 <div class=grey>
3088 <table class=headerdata>
3089 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3090 </table>
3091 </div>
3092 </section>
3093 </section>
3094
3095 <section class=match id=match53>
3096
3097 <h1>Nucleotide Sequence (74 letters)</h1>
3098
3099 <section class=header>
3100
3101 <table class=headerdata>
3102 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3103 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3104 <tr><td class=param>Query length:</td><td>20</td></tr>
3105 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3106 <tr><td class=param>Database:</td><td></td></tr>
3107 </table>
3108
3109 </section>
3110
3111 <section>
3112 <h2>No Hits</h2>
3113 <div class=grey>
3114 <table class=headerdata>
3115 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3116 </table>
3117 </div>
3118 </section>
3119 </section>
3120
3121 <section class=match id=match54>
3122
3123 <h1>Nucleotide Sequence (74 letters)</h1>
3124
3125 <section class=header>
3126
3127 <table class=headerdata>
3128 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3129 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3130 <tr><td class=param>Query length:</td><td>20</td></tr>
3131 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3132 <tr><td class=param>Database:</td><td></td></tr>
3133 </table>
3134
3135 </section>
3136
3137 <section>
3138 <h2>No Hits</h2>
3139 <div class=grey>
3140 <table class=headerdata>
3141 <tr><td class=param>Message:</td><td>No hits found</td></tr>
3142 </table>
3143 </div>
3144 </section>
3145 </section>
3146
3147 <section class=match id=match55>
3148
3149 <h1>Nucleotide Sequence (74 letters)</h1>
3150
3151 <section class=header>
3152
3153 <table class=headerdata>
3154 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3155 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3156 <tr><td class=param>Query length:</td><td>20</td></tr>
3157 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3158 <tr><td class=param>Database:</td><td></td></tr>
3159 </table>
3160
3161 </section>
3162
3163
3164 <section class=graphics>
3165 <h2>Graphic Summary</h2>
3166
3167 <div class=grey>
3168 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
3169
3170 <div class=defline id=defline55>
3171 Mouse-over to show defline and scores, click to show alignments
3172 </div>
3173
3174 <div class=graphic>
3175 <h4 class=darkHeader>Color key for alignment scores</h4>
3176 <div class=legend><div class=graphicrow>
3177 <div class=graphicitem style="background-color: black">&lt;40</div>
3178 <div class=graphicitem style="background-color: blue">40–50</div>
3179 <div class=graphicitem style="background-color: green">50–80</div>
3180 <div class=graphicitem style="background-color: magenta">80–200</div>
3181 <div class=graphicitem style="background-color: red">200≤</div>
3182 </div></div>
3183 <div style="clear: left"></div>
3184
3185 <div class=tablewrapper>
3186
3187 <div class=scale>
3188 <div>query:</div>
3189 <div class=graphicrow>
3190 <div>
3191 <div class=graphicitem style="width: 10.81081081081081%">
3192 <div>8</div>
3193 </div>
3194 <div class=graphicitem style="width: 10.81081081081081%">
3195 <div>16</div>
3196 </div>
3197 <div class=graphicitem style="width: 10.81081081081081%">
3198 <div>24</div>
3199 </div>
3200 <div class=graphicitem style="width: 10.81081081081081%">
3201 <div>32</div>
3202 </div>
3203 <div class=graphicitem style="width: 10.81081081081081%">
3204 <div>40</div>
3205 </div>
3206 <div class=graphicitem style="width: 10.81081081081081%">
3207 <div>48</div>
3208 </div>
3209 <div class=graphicitem style="width: 10.81081081081081%">
3210 <div>56</div>
3211 </div>
3212 <div class=graphicitem style="width: 10.81081081081081%">
3213 <div>64</div>
3214 </div>
3215 <div class=graphicitem style="width: 10.81081081081081%">
3216 <div>72</div>
3217 </div>
3218 <div class=graphicitem style="width: 2.7027027027027026%">
3219 <div>&nbsp;</div>
3220 <div class=lastlabel>74</div>
3221 </div>
3222 </div>
3223 </div>
3224 <div style="clear: left"></div>
3225 </div>
3226
3227 <a class=matchresult
3228 href="#hit1"
3229 onmouseover='document.getElementById("defline55").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
3230 onmouseout='document.getElementById("defline55").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
3231 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
3232 <div class="matchrow graphicrow">
3233 <div class="matchitem graphicitem"
3234 style="background-color: green; width: 100.0%"></div>
3235 </div>
3236 </a>
3237
3238 </div>
3239 </div>
3240 </div>
3241 </section>
3242
3243
3244
3245 <section class=descriptions>
3246 <h2>Descriptions</h2>
3247
3248 <div class=grey><div class=white>
3249 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
3250
3251 <table class=descriptiontable>
3252 <col/><col/><col/><col/><col/><col/><col/>
3253 <tr>
3254 <th>Description</th>
3255 <th>Max score</th>
3256 <th>Total score</th>
3257 <th>Query cover</th>
3258 <th>E value</th>
3259 <th>Ident</th>
3260 <th>Accession</th>
3261 </tr>
3262 <tr>
3263 <td><div><a href="#hit1"
3264 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
3265 id="description1">
3266 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
3267 </a></div></td>
3268 <td>89.7</td>
3269 <td>89.7</td>
3270 <td>100%</td>
3271 <td>6.629e-23</td>
3272 <td>86%</td>
3273 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a></td>
3274 </tr>
3275 </table>
3276
3277 </div></div>
3278 </section>
3279
3280
3281
3282 <section class=alignments>
3283 <h2>Alignments</h2>
3284
3285 <div class=grey><div class=white>
3286 <div class=alignment id=hit1>
3287
3288 <div class=linkheader>
3289 <div class=right><a href="#description1">Descriptions</a></div>
3290 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">GenBank</a>
3291 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&amp;log$=nuclalign">Graphics</a>
3292 </div>
3293
3294 <div class=title>
3295 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
3296 <p class=titleinfo>
3297 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a>
3298 <span class=b>Length:</span> 4180
3299 <span class=b>Number of Matches:</span> 1
3300 </p>
3301 </div>
3302
3303
3304 <div class=hotspot>
3305 <p class=range>
3306 <span class=range>Range 1: 1516 to 1589</span>
3307 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign&amp;from=1516&amp;to=1589">GenBank</a>
3308 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&amp;log$=nuclalign&amp;from=1516&amp;to=1589">Graphics</a>
3309 </p>
3310
3311 <table class=hotspotstable>
3312 <tr>
3313 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
3314 </tr>
3315 <tr>
3316 <td>89.7 bits(98)</td>
3317 <td>0.0</td>
3318 <td>64/74(86%)</td>
3319 <td>0/74(0%)</td>
3320 <td>Plus/Plus</td>
3321 </tr>
3322 </table>
3323
3324 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
3325 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
3326 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre>
3327 </div>
3328
3329 </div>
3330
3331 </div></div>
3332 </section>
3333 </section>
3334
3335 <section class=match id=match56>
3336
3337 <h1>Nucleotide Sequence (74 letters)</h1>
3338
3339 <section class=header>
3340
3341 <table class=headerdata>
3342 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
3343 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
3344 <tr><td class=param>Query length:</td><td>20</td></tr>
3345 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
3346 <tr><td class=param>Database:</td><td></td></tr>
3347 </table>
3348
3349 </section>
3350
3351
3352 <section class=graphics>
3353 <h2>Graphic Summary</h2>
3354
3355 <div class=grey>
3356 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
3357
3358 <div class=defline id=defline56>
3359 Mouse-over to show defline and scores, click to show alignments
3360 </div>
3361
3362 <div class=graphic>
3363 <h4 class=darkHeader>Color key for alignment scores</h4>
3364 <div class=legend><div class=graphicrow>
3365 <div class=graphicitem style="background-color: black">&lt;40</div>
3366 <div class=graphicitem style="background-color: blue">40–50</div>
3367 <div class=graphicitem style="background-color: green">50–80</div>
3368 <div class=graphicitem style="background-color: magenta">80–200</div>
3369 <div class=graphicitem style="background-color: red">200≤</div>
3370 </div></div>
3371 <div style="clear: left"></div>
3372
3373 <div class=tablewrapper>
3374
3375 <div class=scale>
3376 <div>query:</div>
3377 <div class=graphicrow>
3378 <div>
3379 <div class=graphicitem style="width: 10.81081081081081%">
3380 <div>8</div>
3381 </div>
3382 <div class=graphicitem style="width: 10.81081081081081%">
3383 <div>16</div>
3384 </div>
3385 <div class=graphicitem style="width: 10.81081081081081%">
3386 <div>24</div>
3387 </div>
3388 <div class=graphicitem style="width: 10.81081081081081%">
3389 <div>32</div>
3390 </div>
3391 <div class=graphicitem style="width: 10.81081081081081%">
3392 <div>40</div>
3393 </div>
3394 <div class=graphicitem style="width: 10.81081081081081%">
3395 <div>48</div>
3396 </div>
3397 <div class=graphicitem style="width: 10.81081081081081%">
3398 <div>56</div>
3399 </div>
3400 <div class=graphicitem style="width: 10.81081081081081%">
3401 <div>64</div>
3402 </div>
3403 <div class=graphicitem style="width: 10.81081081081081%">
3404 <div>72</div>
3405 </div>
3406 <div class=graphicitem style="width: 2.7027027027027026%">
3407 <div>&nbsp;</div>
3408 <div class=lastlabel>74</div>
3409 </div>
3410 </div>
3411 </div>
3412 <div style="clear: left"></div>
3413 </div>
3414
3415 <a class=matchresult
3416 href="#hit1"
3417 onmouseover='document.getElementById("defline56").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
3418 onmouseout='document.getElementById("defline56").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
3419 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
3420 <div class="matchrow graphicrow">
3421 <div class="matchitem graphicitem"
3422 style="background-color: green; width: 100.0%"></div>
3423 </div>
3424 </a>
3425
3426 </div>
3427 </div>
3428 </div>
3429 </section>
3430
3431
3432
3433 <section class=descriptions>
3434 <h2>Descriptions</h2>
3435
3436 <div class=grey><div class=white>
3437 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
3438
3439 <table class=descriptiontable>
3440 <col/><col/><col/><col/><col/><col/><col/>
3441 <tr>
3442 <th>Description</th>
3443 <th>Max score</th>
3444 <th>Total score</th>
3445 <th>Query cover</th>
3446 <th>E value</th>
3447 <th>Ident</th>
3448 <th>Accession</th>
3449 </tr>
3450 <tr>
3451 <td><div><a href="#hit1"
3452 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
3453 id="description1">
3454 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
3455 </a></div></td>
3456 <td>89.7</td>
3457 <td>89.7</td>
3458 <td>100%</td>
3459 <td>6.629e-23</td>
3460 <td>86%</td>
3461 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a></td>
3462 </tr>
3463 </table>
3464
3465 </div></div>
3466 </section>
3467
3468
3469
3470 <section class=alignments>
3471 <h2>Alignments</h2>
3472
3473 <div class=grey><div class=white>
3474 <div class=alignment id=hit1>
3475
3476 <div class=linkheader>
3477 <div class=right><a href="#description1">Descriptions</a></div>
3478 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">GenBank</a>
3479 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&amp;log$=nuclalign">Graphics</a>
3480 </div>
3481
3482 <div class=title>
3483 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
3484 <p class=titleinfo>
3485 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a>
3486 <span class=b>Length:</span> 4983
3487 <span class=b>Number of Matches:</span> 1
3488 </p>
3489 </div>
3490
3491
3492 <div class=hotspot>
3493 <p class=range>
3494 <span class=range>Range 1: 2319 to 2392</span>
3495 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign&amp;from=2319&amp;to=2392">GenBank</a>
3496 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&amp;log$=nuclalign&amp;from=2319&amp;to=2392">Graphics</a>
3497 </p>
3498
3499 <table class=hotspotstable>
3500 <tr>
3501 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
3502 </tr>
3503 <tr>
3504 <td>89.7 bits(98)</td>
3505 <td>0.0</td>
3506 <td>64/74(86%)</td>
3507 <td>0/74(0%)</td>
3508 <td>Plus/Plus</td>
3509 </tr>
3510 </table>
3511
3512 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
3513 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
3514 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre>
3515 </div>
3516
3517 </div>
3518
3519 </div></div>
3520 </section>
3521 </section>
3522
3523 </div>
3524
3525 <footer>
3526 This page was generated by <a href="...">blast2html</a>.
3527 </footer>
3528 </body>
3529 </html>
3530