Mercurial > repos > jankanis > blast2html
diff test-data/blast xml example3.html @ 118:7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 31 Jul 2014 13:09:30 +0200 |
| parents | 4f0ed3b5ae46 |
| children |
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--- a/test-data/blast xml example3.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example3.html Thu Jul 31 13:09:30 2014 +0200 @@ -719,7 +719,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -810,7 +810,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> </tr> </table> @@ -827,13 +827,13 @@ <div class=linkheader> <div class=right><a href="#description3-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -850,10 +850,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>37.3537 bits (40)</td> + <td>7.01052e-08</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -952,7 +952,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1043,7 +1043,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> </tr> </table> @@ -1060,13 +1060,13 @@ <div class=linkheader> <div class=right><a href="#description6-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -1083,10 +1083,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>37.3537 bits (40)</td> + <td>7.01052e-08</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1410,7 +1410,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1503,7 +1503,7 @@ <td>85%</td> <td>2.981e-06</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a></td> </tr> </table> @@ -1520,13 +1520,13 @@ <div class=linkheader> <div class=right><a href="#description18-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a> <span class=b>Length:</span> 1045 <span class=b>Number of Matches:</span> 1 </p> @@ -1543,10 +1543,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>31.9 bits(34)</td> - <td>0.0</td> - <td>17/17(100%)</td> - <td>0/17(0%)</td> + <td>31.9436 bits (34)</td> + <td>2.98095e-06</td> + <td>17/17 (100%)</td> + <td>0/17 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1595,7 +1595,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1686,7 +1686,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> </tr> </table> @@ -1703,13 +1703,13 @@ <div class=linkheader> <div class=right><a href="#description19-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -1726,10 +1726,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>37.3537 bits (40)</td> + <td>7.01052e-08</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1828,7 +1828,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1919,7 +1919,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> </tr> </table> @@ -1936,13 +1936,13 @@ <div class=linkheader> <div class=right><a href="#description22-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -1959,10 +1959,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>37.3537 bits (40)</td> + <td>7.01052e-08</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -2611,7 +2611,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -2699,7 +2699,7 @@ <td>100%</td> <td>9.338e-08</td> <td>92%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> </tr> </table> @@ -2716,13 +2716,13 @@ <div class=linkheader> <div class=right><a href="#description47-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -2739,10 +2739,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>23/25(92%)</td> - <td>0/25(0%)</td> + <td>37.3537 bits (40)</td> + <td>9.33825e-08</td> + <td>23/25 (92%)</td> + <td>0/25 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -2791,7 +2791,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -2879,7 +2879,7 @@ <td>100%</td> <td>9.338e-08</td> <td>92%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> </tr> </table> @@ -2896,13 +2896,13 @@ <div class=linkheader> <div class=right><a href="#description48-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -2919,10 +2919,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>37.4 bits(40)</td> - <td>0.0</td> - <td>23/25(92%)</td> - <td>0/25(0%)</td> + <td>37.3537 bits (40)</td> + <td>9.33825e-08</td> + <td>23/25 (92%)</td> + <td>0/25 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -3121,7 +3121,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -3213,7 +3213,7 @@ <td>100%</td> <td>6.629e-23</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> </tr> </table> @@ -3230,13 +3230,13 @@ <div class=linkheader> <div class=right><a href="#description55-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -3253,10 +3253,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>89.7 bits(98)</td> - <td>0.0</td> - <td>64/74(86%)</td> - <td>0/74(0%)</td> + <td>89.6514 bits (98)</td> + <td>6.62923e-23</td> + <td>64/74 (86%)</td> + <td>0/74 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -3308,7 +3308,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -3400,7 +3400,7 @@ <td>100%</td> <td>6.629e-23</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> </tr> </table> @@ -3417,13 +3417,13 @@ <div class=linkheader> <div class=right><a href="#description56-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -3440,10 +3440,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>89.7 bits(98)</td> - <td>0.0</td> - <td>64/74(86%)</td> - <td>0/74(0%)</td> + <td>89.6514 bits (98)</td> + <td>6.62923e-23</td> + <td>64/74 (86%)</td> + <td>0/74 (0%)</td> <td>Plus/Plus</td> </tr> </table>