Mercurial > repos > jankanis > blast2html

diff test-data/blast xml example4b.html @ 118:7f3f8c10f44b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix for Rikilt issues 8, 11, 12, 14
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 13:09:30 +0200
parents 0c2a03f9740b
children
line wrap: on
line diff
--- a/test-data/blast xml example4b.html	Thu Jul 31 14:55:07 2014 +0200
+++ b/test-data/blast xml example4b.html	Thu Jul 31 13:09:30 2014 +0200
@@ -473,7 +473,7 @@
                   <div class=graphicitem style="background-color: blue">40–50</div>
                   <div class=graphicitem style="background-color: green">50–80</div>
                   <div class=graphicitem style="background-color: magenta">80–200</div>
-                  <div class=graphicitem style="background-color: red">200≤</div>
+                  <div class=graphicitem style="background-color: red">≥200</div>
               </div></div>
               <div style="clear: left"></div>
 
@@ -575,7 +575,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/AB209952.1/">5</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit1-2"
@@ -588,7 +588,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/DJ437711/">2</a></td>
                 </tr>
               </table>
 
@@ -605,13 +605,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description1-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
                     <span class=b>Length:</span> 2457
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -628,10 +628,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>40.1 bits(20)</td>
-                      <td>0.0</td>
-                      <td>20/20(100%)</td>
-                      <td>0/20(0%)</td>
+                      <td>40.14 bits (20)</td>
+                      <td>1.51296e-07</td>
+                      <td>20/20 (100%)</td>
+                      <td>0/20 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -647,13 +647,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description1-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
                     <span class=b>Length:</span> 323
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -670,10 +670,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>40.1 bits(20)</td>
-                      <td>0.0</td>
-                      <td>20/20(100%)</td>
-                      <td>0/20(0%)</td>
+                      <td>40.14 bits (20)</td>
+                      <td>1.51296e-07</td>
+                      <td>20/20 (100%)</td>
+                      <td>0/20 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -747,7 +747,7 @@
                   <div class=graphicitem style="background-color: blue">40–50</div>
                   <div class=graphicitem style="background-color: green">50–80</div>
                   <div class=graphicitem style="background-color: magenta">80–200</div>
-                  <div class=graphicitem style="background-color: red">200≤</div>
+                  <div class=graphicitem style="background-color: red">≥200</div>
               </div></div>
               <div style="clear: left"></div>
 
@@ -862,7 +862,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/AB209952.1/">5</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit3-2"
@@ -875,7 +875,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/DJ437711/">2</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit3-3"
@@ -888,7 +888,7 @@
                   <td>85%</td>
                   <td>9.334e-06</td>
                   <td>100%</td>
-                  <td><a href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
                 </tr>
               </table>
 
@@ -905,13 +905,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
                     <span class=b>Length:</span> 2457
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -928,10 +928,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>40.1 bits(20)</td>
-                      <td>0.0</td>
-                      <td>20/20(100%)</td>
-                      <td>0/20(0%)</td>
+                      <td>40.14 bits (20)</td>
+                      <td>1.51296e-07</td>
+                      <td>20/20 (100%)</td>
+                      <td>0/20 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -947,13 +947,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
                     <span class=b>Length:</span> 323
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -970,10 +970,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>40.1 bits(20)</td>
-                      <td>0.0</td>
-                      <td>20/20(100%)</td>
-                      <td>0/20(0%)</td>
+                      <td>40.14 bits (20)</td>
+                      <td>1.51296e-07</td>
+                      <td>20/20 (100%)</td>
+                      <td>0/20 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -989,13 +989,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-3">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/AJ308515.1/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/AJ308515.1/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
                     <span class=b>Length:</span> 1045
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1012,10 +1012,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>34.2 bits(17)</td>
-                      <td>0.0</td>
-                      <td>17/17(100%)</td>
-                      <td>0/17(0%)</td>
+                      <td>34.1929 bits (17)</td>
+                      <td>9.33411e-06</td>
+                      <td>17/17 (100%)</td>
+                      <td>0/17 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -1114,7 +1114,7 @@
                   <div class=graphicitem style="background-color: blue">40–50</div>
                   <div class=graphicitem style="background-color: green">50–80</div>
                   <div class=graphicitem style="background-color: magenta">80–200</div>
-                  <div class=graphicitem style="background-color: red">200≤</div>
+                  <div class=graphicitem style="background-color: red">≥200</div>
               </div></div>
               <div style="clear: left"></div>
 
@@ -1217,7 +1217,7 @@
                   <td>88%</td>
                   <td>3.148e-06</td>
                   <td>95%</td>
-                  <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/EUG/">7</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit6-2"
@@ -1230,7 +1230,7 @@
                   <td>88%</td>
                   <td>3.148e-06</td>
                   <td>95%</td>
-                  <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/AY326434/">6</a></td>
                 </tr>
               </table>
 
@@ -1247,13 +1247,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description6-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
                     <span class=b>Length:</span> 4983
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1270,10 +1270,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>36.2 bits(18)</td>
-                      <td>0.0</td>
-                      <td>21/22(95%)</td>
-                      <td>0/22(0%)</td>
+                      <td>36.1753 bits (18)</td>
+                      <td>3.14801e-06</td>
+                      <td>21/22 (95%)</td>
+                      <td>0/22 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -1289,13 +1289,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description6-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
                     <span class=b>Length:</span> 4180
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1312,10 +1312,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>36.2 bits(18)</td>
-                      <td>0.0</td>
-                      <td>21/22(95%)</td>
-                      <td>0/22(0%)</td>
+                      <td>36.1753 bits (18)</td>
+                      <td>3.14801e-06</td>
+                      <td>21/22 (95%)</td>
+                      <td>0/22 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -1364,7 +1364,7 @@
                   <div class=graphicitem style="background-color: blue">40–50</div>
                   <div class=graphicitem style="background-color: green">50–80</div>
                   <div class=graphicitem style="background-color: magenta">80–200</div>
-                  <div class=graphicitem style="background-color: red">200≤</div>
+                  <div class=graphicitem style="background-color: red">≥200</div>
               </div></div>
               <div style="clear: left"></div>
 
@@ -1467,7 +1467,7 @@
                   <td>100%</td>
                   <td>3.564e-15</td>
                   <td>86%</td>
-                  <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/EUG/">7</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit7-2"
@@ -1480,7 +1480,7 @@
                   <td>100%</td>
                   <td>3.564e-15</td>
                   <td>86%</td>
-                  <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
+                  <td><a target="_top" href="http://example.com/example-genebank/AY326434/">6</a></td>
                 </tr>
               </table>
 
@@ -1497,13 +1497,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description7-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
                     <span class=b>Length:</span> 4983
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1520,10 +1520,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>67.9 bits(34)</td>
-                      <td>0.0</td>
-                      <td>64/74(86%)</td>
-                      <td>0/74(0%)</td>
+                      <td>67.8929 bits (34)</td>
+                      <td>3.56369e-15</td>
+                      <td>64/74 (86%)</td>
+                      <td>0/74 (0%)</td>
                       <td>Plus/Plus</td>
                     </tr>
                   </table>
@@ -1542,13 +1542,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description7-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
+                  <a class="linkheader" target="_top" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
+                    <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
                     <span class=b>Length:</span> 4180
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1565,10 +1565,10 @@
                       <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                     </tr>
                     <tr>
-                      <td>67.9 bits(34)</td>
-                      <td>0.0</td>
-                      <td>64/74(86%)</td>
-                      <td>0/74(0%)</td>
+                      <td>67.8929 bits (34)</td>
+                      <td>3.56369e-15</td>
+                      <td>64/74 (86%)</td>
+                      <td>0/74 (0%)</td>
                       <td>Plus/Minus</td>
                     </tr>
                   </table>