diff test-data/blast xml example4.html @ 98:e780606b7c25

test new command line parameters, fix small bug
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 30 Jun 2014 17:51:56 +0200
parents 8b3c5d334a84
children b3b5ee557170
line wrap: on
line diff
--- a/test-data/blast xml example4.html	Mon Jun 30 17:31:26 2014 +0200
+++ b/test-data/blast xml example4.html	Mon Jun 30 17:51:56 2014 +0200
@@ -557,7 +557,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td>
+                  <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit1-2"
@@ -570,7 +570,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td>
+                  <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
                 </tr>
               </table>
 
@@ -587,13 +587,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description1-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
                     <span class=b>Length:</span> 2457
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -629,13 +629,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description1-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
                     <span class=b>Length:</span> 323
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -846,7 +846,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td>
+                  <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit3-2"
@@ -859,7 +859,7 @@
                   <td>100%</td>
                   <td>1.513e-07</td>
                   <td>100%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td>
+                  <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit3-3"
@@ -872,7 +872,7 @@
                   <td>85%</td>
                   <td>9.334e-06</td>
                   <td>100%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">1</a></td>
+                  <td><a href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
                 </tr>
               </table>
 
@@ -889,13 +889,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
                     <span class=b>Length:</span> 2457
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -931,13 +931,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
                     <span class=b>Length:</span> 323
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -973,13 +973,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description3-3">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/AJ308515.1/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|1</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
                     <span class=b>Length:</span> 1045
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1204,7 +1204,7 @@
                   <td>88%</td>
                   <td>3.148e-06</td>
                   <td>95%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td>
+                  <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit6-2"
@@ -1217,7 +1217,7 @@
                   <td>88%</td>
                   <td>3.148e-06</td>
                   <td>95%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td>
+                  <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
                 </tr>
               </table>
 
@@ -1234,13 +1234,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description6-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
                     <span class=b>Length:</span> 4983
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1276,13 +1276,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description6-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
                     <span class=b>Length:</span> 4180
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1455,7 +1455,7 @@
                   <td>100%</td>
                   <td>3.564e-15</td>
                   <td>86%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td>
+                  <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
                 </tr>
                 <tr>
                   <td><div><a href="#hit7-2"
@@ -1468,7 +1468,7 @@
                   <td>100%</td>
                   <td>3.564e-15</td>
                   <td>86%</td>
-                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td>
+                  <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
                 </tr>
               </table>
 
@@ -1485,13 +1485,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description7-1">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
                     <span class=b>Length:</span> 4983
                     <span class=b>Number of Matches:</span> 1
                   </p>
@@ -1530,13 +1530,13 @@
 
                 <div class=linkheader>
                   <div class=right><a href="#description7-2">Descriptions</a></div>
-                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a>
+                  <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
                 </div>
 
                 <div class=title>
                   <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                   <p class=titleinfo>
-                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a>
+                    <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
                     <span class=b>Length:</span> 4180
                     <span class=b>Number of Matches:</span> 1
                   </p>