Mercurial > repos > jankanis > blast2html
changeset 29:420d0508dcd6
reorganise to match galaxy tool shed layout
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 15 May 2014 16:50:38 +0200 |
| parents | 8a8c0c71b5d1 |
| children | 2143f62809d0 |
| files | blast2html.xml example_xmls/Galaxy19-[blastn_EUginius_primers_probes.fasta_vs_EUginius_plasmid_insert.fasta_].blastxml example_xmls/Galaxy8-[blastn-short_EUginius_primers_probes.fasta_vs__EUginius_].blastxml example_xmls/blast xml example1.xml example_xmls/blast xml example2.xml test-data/Galaxy19-[blastn_EUginius_primers_probes.fasta_vs_EUginius_plasmid_insert.fasta_].blastxml test-data/Galaxy8-[blastn-short_EUginius_primers_probes.fasta_vs__EUginius_].blastxml test-data/blast xml example1.xml test-data/blast xml example2.xml tool_dependencies.xml |
| diffstat | 10 files changed, 8426 insertions(+), 8426 deletions(-) [+] |
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--- a/blast2html.xml Thu May 15 16:46:30 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,35 +0,0 @@ -<tool id="blast2html" name="blast2html" version="0.0.1"> - - <description>Convert BLAST XML to HTML</description> - - <requirements> - <requirement type="python-module">jinja2</requirement> - <requirement type="python-module">lxml</requirement> - </requirements> - - <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> - - <inputs> - <param format="blast" name="input" type="data" label="Source file"/> - </inputs> - - <outputs> - <data format="html" name="output" /> - </outputs> - - <tests> - <test> - <param name="input" value="blast-view_test1_in.xml"/> - <output name="out_file1" file="blast-view_test1_out.html"/> - </test> - <test> - <param name="input" value="blast-view_test2_in.xml"/> - <output name="out_file1" file="blast-view_test2_out.html"/> - </test> - </tests> - - <help> - This tool converts the default BLAST XML result into a HTML document - </help> - -</tool>
--- a/example_xmls/Galaxy19-[blastn_EUginius_primers_probes.fasta_vs_EUginius_plasmid_insert.fasta_].blastxml Thu May 15 16:46:30 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1387 +0,0 @@ -<?xml version="1.0"?> -<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> -<BlastOutput> - <BlastOutput_program>blastn</BlastOutput_program> - <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> - <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> - <BlastOutput_db></BlastOutput_db> - <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> - <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def> - <BlastOutput_query-len>20</BlastOutput_query-len> - <BlastOutput_param> - <Parameters> - <Parameters_expect>0.001</Parameters_expect> - <Parameters_sc-match>2</Parameters_sc-match> - <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> - <Parameters_gap-open>5</Parameters_gap-open> - <Parameters_gap-extend>2</Parameters_gap-extend> - <Parameters_filter>L;m;</Parameters_filter> - </Parameters> - </BlastOutput_param> -<BlastOutput_iterations> -<Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_3</Hit_id> - <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> - <Hit_accession>Subject_3</Hit_accession> - <Hit_len>323</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>7.01052e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>200</Hsp_hit-from> - <Hsp_hit-to>219</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> - <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_6</Hit_id> - <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> - <Hit_accession>Subject_6</Hit_accession> - <Hit_len>2457</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>7.01052e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2119</Hsp_hit-from> - <Hsp_hit-to>2138</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> - <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>8</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>9</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>10</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>11</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>12</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>13</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>14</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>15</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>16</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>17</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>18</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_2</Hit_id> - <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</Hit_def> - <Hit_accession>Subject_2</Hit_accession> - <Hit_len>1045</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>31.9436</Hsp_bit-score> - <Hsp_score>34</Hsp_score> - <Hsp_evalue>2.98095e-06</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2</Hsp_hit-from> - <Hsp_hit-to>18</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>17</Hsp_identity> - <Hsp_positive>17</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>17</Hsp_align-len> - <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>|||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>19</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_3</Hit_id> - <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> - <Hit_accession>Subject_3</Hit_accession> - <Hit_len>323</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>7.01052e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>224</Hsp_hit-from> - <Hsp_hit-to>243</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>20</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>21</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>22</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_6</Hit_id> - <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> - <Hit_accession>Subject_6</Hit_accession> - <Hit_len>2457</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>7.01052e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2143</Hsp_hit-from> - <Hsp_hit-to>2162</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>23</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>24</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>25</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>26</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>27</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>28</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>29</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>30</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>31</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>32</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>15375</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>33</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>34</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>35</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>36</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>37</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>38</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>39</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>40</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>12312</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>41</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>42</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>43</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>44</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>45</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>46</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>47</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_7</Hit_id> - <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> - <Hit_accession>Subject_7</Hit_accession> - <Hit_len>4180</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>9.33825e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>25</Hsp_query-to> - <Hsp_hit-from>1541</Hsp_hit-from> - <Hsp_hit-to>1565</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>23</Hsp_identity> - <Hsp_positive>23</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>25</Hsp_align-len> - <Hsp_qseq>ACATGAACAGCGCCTTGACCACAGC</Hsp_qseq> - <Hsp_hseq>ACATGAACAGCGCCCTGACCACCGC</Hsp_hseq> - <Hsp_midline>|||||||||||||| ||||||| ||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>48</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_8</Hit_id> - <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> - <Hit_accession>Subject_8</Hit_accession> - <Hit_len>4983</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>37.3537</Hsp_bit-score> - <Hsp_score>40</Hsp_score> - <Hsp_evalue>9.33825e-08</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>25</Hsp_query-to> - <Hsp_hit-from>2344</Hsp_hit-from> - <Hsp_hit-to>2368</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>23</Hsp_identity> - <Hsp_positive>23</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>25</Hsp_align-len> - <Hsp_qseq>ACATGAACAGCGCCTTGACCACAGC</Hsp_qseq> - <Hsp_hseq>ACATGAACAGCGCCCTGACCACCGC</Hsp_hseq> - <Hsp_midline>|||||||||||||| ||||||| ||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>16400</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>49</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>50</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>51</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>52</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>53</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>54</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>55</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_7</Hit_id> - <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> - <Hit_accession>Subject_7</Hit_accession> - <Hit_len>4180</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>89.6514</Hsp_bit-score> - <Hsp_score>98</Hsp_score> - <Hsp_evalue>6.62923e-23</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>74</Hsp_query-to> - <Hsp_hit-from>1516</Hsp_hit-from> - <Hsp_hit-to>1589</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>64</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>74</Hsp_align-len> - <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> - <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> - <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>56</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_8</Hit_id> - <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> - <Hit_accession>Subject_8</Hit_accession> - <Hit_len>4983</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>89.6514</Hsp_bit-score> - <Hsp_score>98</Hsp_score> - <Hsp_evalue>6.62923e-23</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>74</Hsp_query-to> - <Hsp_hit-from>2319</Hsp_hit-from> - <Hsp_hit-to>2392</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>64</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>74</Hsp_align-len> - <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> - <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> - <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>11</Statistics_hsp-len> - <Statistics_eff-space>64449</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -</BlastOutput_iterations> -</BlastOutput> -
--- a/example_xmls/Galaxy8-[blastn-short_EUginius_primers_probes.fasta_vs__EUginius_].blastxml Thu May 15 16:46:30 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,412 +0,0 @@ -<?xml version="1.0"?> -<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> -<BlastOutput> - <BlastOutput_program>blastn</BlastOutput_program> - <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> - <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> - <BlastOutput_db>/opt/galaxy/blastdbs/EUginius_plasmid_insert</BlastOutput_db> - <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> - <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def> - <BlastOutput_query-len>20</BlastOutput_query-len> - <BlastOutput_param> - <Parameters> - <Parameters_expect>0.001</Parameters_expect> - <Parameters_sc-match>1</Parameters_sc-match> - <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> - <Parameters_gap-open>5</Parameters_gap-open> - <Parameters_gap-extend>2</Parameters_gap-extend> - <Parameters_filter>L;m;</Parameters_filter> - </Parameters> - </BlastOutput_param> -<BlastOutput_iterations> -<Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>gnl|BL_ORD_ID|5</Hit_id> - <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> - <Hit_accession>5</Hit_accession> - <Hit_len>2457</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>40.14</Hsp_bit-score> - <Hsp_score>20</Hsp_score> - <Hsp_evalue>1.51296e-07</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2119</Hsp_hit-from> - <Hsp_hit-to>2138</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> - <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>2</Hit_num> - <Hit_id>gnl|BL_ORD_ID|2</Hit_id> - <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> - <Hit_accession>2</Hit_accession> - <Hit_len>323</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>40.14</Hsp_bit-score> - <Hsp_score>20</Hsp_score> - <Hsp_evalue>1.51296e-07</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>200</Hsp_hit-from> - <Hsp_hit-to>219</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> - <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>183300</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>183300</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>gnl|BL_ORD_ID|5</Hit_id> - <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> - <Hit_accession>5</Hit_accession> - <Hit_len>2457</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>40.14</Hsp_bit-score> - <Hsp_score>20</Hsp_score> - <Hsp_evalue>1.51296e-07</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2143</Hsp_hit-from> - <Hsp_hit-to>2162</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>2</Hit_num> - <Hit_id>gnl|BL_ORD_ID|2</Hit_id> - <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> - <Hit_accession>2</Hit_accession> - <Hit_len>323</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>40.14</Hsp_bit-score> - <Hsp_score>20</Hsp_score> - <Hsp_evalue>1.51296e-07</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>224</Hsp_hit-from> - <Hsp_hit-to>243</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>20</Hsp_identity> - <Hsp_positive>20</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>20</Hsp_align-len> - <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>||||||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>3</Hit_num> - <Hit_id>gnl|BL_ORD_ID|1</Hit_id> - <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</Hit_def> - <Hit_accession>1</Hit_accession> - <Hit_len>1045</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>34.1929</Hsp_bit-score> - <Hsp_score>17</Hsp_score> - <Hsp_evalue>9.33411e-06</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>20</Hsp_query-to> - <Hsp_hit-from>2</Hsp_hit-from> - <Hsp_hit-to>18</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>17</Hsp_identity> - <Hsp_positive>17</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>17</Hsp_align-len> - <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq> - <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq> - <Hsp_midline>|||||||||||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>183300</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>24</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>229005</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>20</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>8</Statistics_hsp-len> - <Statistics_eff-space>183300</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -<Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>25</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>gnl|BL_ORD_ID|7</Hit_id> - <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> - <Hit_accession>7</Hit_accession> - <Hit_len>4983</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>36.1753</Hsp_bit-score> - <Hsp_score>18</Hsp_score> - <Hsp_evalue>3.14801e-06</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>22</Hsp_query-to> - <Hsp_hit-from>2344</Hsp_hit-from> - <Hsp_hit-to>2365</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>21</Hsp_identity> - <Hsp_positive>21</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>22</Hsp_align-len> - <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq> - <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq> - <Hsp_midline>|||||||||||||| |||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>2</Hit_num> - <Hit_id>gnl|BL_ORD_ID|6</Hit_id> - <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> - <Hit_accession>6</Hit_accession> - <Hit_len>4180</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>36.1753</Hsp_bit-score> - <Hsp_score>18</Hsp_score> - <Hsp_evalue>3.14801e-06</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>22</Hsp_query-to> - <Hsp_hit-from>1541</Hsp_hit-from> - <Hsp_hit-to>1562</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>21</Hsp_identity> - <Hsp_positive>21</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>22</Hsp_align-len> - <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq> - <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq> - <Hsp_midline>|||||||||||||| |||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>9</Statistics_hsp-len> - <Statistics_eff-space>244272</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -<Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>Query_7</Iteration_query-ID> - <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> - <Iteration_query-len>74</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>gnl|BL_ORD_ID|7</Hit_id> - <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> - <Hit_accession>7</Hit_accession> - <Hit_len>4983</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>67.8929</Hsp_bit-score> - <Hsp_score>34</Hsp_score> - <Hsp_evalue>3.56369e-15</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>74</Hsp_query-to> - <Hsp_hit-from>2319</Hsp_hit-from> - <Hsp_hit-to>2392</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>64</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>74</Hsp_align-len> - <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> - <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> - <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>2</Hit_num> - <Hit_id>gnl|BL_ORD_ID|6</Hit_id> - <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> - <Hit_accession>6</Hit_accession> - <Hit_len>4180</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>67.8929</Hsp_bit-score> - <Hsp_score>34</Hsp_score> - <Hsp_evalue>3.56369e-15</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>74</Hsp_query-to> - <Hsp_hit-from>1516</Hsp_hit-from> - <Hsp_hit-to>1589</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>64</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>74</Hsp_align-len> - <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> - <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> - <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8</Statistics_db-num> - <Statistics_db-len>15339</Statistics_db-len> - <Statistics_hsp-len>10</Statistics_hsp-len> - <Statistics_eff-space>976576</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -</BlastOutput_iterations> -</BlastOutput> -
--- a/example_xmls/blast xml example1.xml Thu May 15 16:46:30 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6548 +0,0 @@ -<?xml version="1.0"?> -<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> -<BlastOutput> - <BlastOutput_program>blastn</BlastOutput_program> - <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> - <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> - <BlastOutput_db>pdb</BlastOutput_db> - <BlastOutput_query-ID>106397</BlastOutput_query-ID> - <BlastOutput_query-def>No definition line</BlastOutput_query-def> - <BlastOutput_query-len>16</BlastOutput_query-len> - <BlastOutput_param> - <Parameters> - <Parameters_expect>1000</Parameters_expect> - <Parameters_sc-match>1</Parameters_sc-match> - <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> - <Parameters_gap-open>5</Parameters_gap-open> - <Parameters_gap-extend>2</Parameters_gap-extend> - <Parameters_filter>F</Parameters_filter> - </Parameters> - </BlastOutput_param> -<BlastOutput_iterations> -<Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>106397</Iteration_query-ID> - <Iteration_query-def>No definition line</Iteration_query-def> - <Iteration_query-len>16</Iteration_query-len> -<Iteration_hits> -<Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|557804730|pdb|3J5K|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)</Hit_def> - <Hit_accession>3J5K_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>2</Hit_num> - <Hit_id>gi|557804675|pdb|3J5I|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)</Hit_def> - <Hit_accession>3J5I_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>3</Hit_num> - <Hit_id>gi|557804619|pdb|3J5G|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)</Hit_def> - <Hit_accession>3J5G_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>4</Hit_num> - <Hit_id>gi|557804563|pdb|3J5E|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)</Hit_def> - <Hit_accession>3J5E_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>5</Hit_num> - <Hit_id>gi|557804507|pdb|3J5C|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)</Hit_def> - <Hit_accession>3J5C_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>6</Hit_num> - <Hit_id>gi|557804451|pdb|3J5A|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</Hit_def> - <Hit_accession>3J5A_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>7</Hit_num> - <Hit_id>gi|557804395|pdb|3J58|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</Hit_def> - <Hit_accession>3J58_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>8</Hit_num> - <Hit_id>gi|557804339|pdb|3J56|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</Hit_def> - <Hit_accession>3J56_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>9</Hit_num> - <Hit_id>gi|557804283|pdb|3J54|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</Hit_def> - <Hit_accession>3J54_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>10</Hit_num> - <Hit_id>gi|557804227|pdb|3J52|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</Hit_def> - <Hit_accession>3J52_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>11</Hit_num> - <Hit_id>gi|557804195|pdb|3J51|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</Hit_def> - <Hit_accession>3J51_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>12</Hit_num> - <Hit_id>gi|557804163|pdb|3J50|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</Hit_def> - <Hit_accession>3J50_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>13</Hit_num> - <Hit_id>gi|557804083|pdb|3J4X|A</Hit_id> - <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</Hit_def> - <Hit_accession>3J4X_A</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>14</Hit_num> - <Hit_id>gi|474452808|pdb|3J37|A</Hit_id> - <Hit_def>Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome</Hit_def> - <Hit_accession>3J37_A</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>15</Hit_num> - <Hit_id>gi|326634210|pdb|3IZT|B</Hit_id> - <Hit_def>Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. >gi|326634243|pdb|3IZU|B Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon >gi|380763703|pdb|3J0T|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class2 Of The Six Classes) >gi|380763785|pdb|3J0W|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4a Of The Six Classes) >gi|380763843|pdb|3J0Y|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4b Of The Six Classes) >gi|380763925|pdb|3J11|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 3 Of The Six Classes) >gi|380763959|pdb|3J12|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 5 Of The Six Classes) >gi|380764016|pdb|3J14|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 6 Of The Six Classes)</Hit_def> - <Hit_accession>3IZT_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>16</Hit_num> - <Hit_id>gi|224510767|pdb|3FIK|B</Hit_id> - <Hit_def>Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. >gi|257097373|pdb|3I1N|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097425|pdb|3I1P|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097479|pdb|3I1R|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097533|pdb|3I1T|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097588|pdb|3I20|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097643|pdb|3I22|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|294662251|pdb|2WWQ|B Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2). >gi|309320065|pdb|3OFC|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound. >gi|309320169|pdb|3OFZ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin. >gi|309320200|pdb|3OG0|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113654|pdb|3OAS|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113685|pdb|3OAT|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound. >gi|334359437|pdb|3R8S|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|334359468|pdb|3R8T|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|371927526|pdb|3SGF|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome >gi|371927651|pdb|3UOS|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) >gi|386783121|pdb|3J19|A Chain A, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb And Ef-G During Translocation And Mld-Loading (50s Subunit) >gi|567754995|pdb|3J5U|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna Structure, 50s Subunit) >gi|567755029|pdb|3J5W|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna*ef-g Structure, 50s Subunit)</Hit_def> - <Hit_accession>3FIK_B</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>17</Hit_num> - <Hit_id>gi|256032374|pdb|3E1B|B</Hit_id> - <Hit_def>Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State >gi|256032431|pdb|3E1D|B Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Post-Accommodation State</Hit_def> - <Hit_accession>3E1B_B</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>18</Hit_num> - <Hit_id>gi|157883716|pdb|2GYC|0</Hit_id> - <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143</Hit_def> - <Hit_accession>2GYC_0</Hit_accession> - <Hit_len>2740</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>889</Hsp_hit-from> - <Hsp_hit-to>904</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2453</Hsp_hit-from> - <Hsp_hit-to>2460</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>776</Hsp_hit-from> - <Hsp_hit-to>782</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1910</Hsp_hit-from> - <Hsp_hit-to>1916</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>19</Hit_num> - <Hit_id>gi|157883710|pdb|2GYA|0</Hit_id> - <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056</Hit_def> - <Hit_accession>2GYA_0</Hit_accession> - <Hit_len>2740</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>889</Hsp_hit-from> - <Hsp_hit-to>904</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2453</Hsp_hit-from> - <Hsp_hit-to>2460</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>776</Hsp_hit-from> - <Hsp_hit-to>782</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1910</Hsp_hit-from> - <Hsp_hit-to>1916</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>20</Hit_num> - <Hit_id>gi|122922257|pdb|2I2V|B</Hit_id> - <Hit_def>Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def> - <Hit_accession>2I2V_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>21</Hit_num> - <Hit_id>gi|83754062|pdb|2AW4|B</Hit_id> - <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|122922241|pdb|2I2T|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|157836046|pdb|2QOV|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836098|pdb|2QOX|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836150|pdb|2QOZ|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836202|pdb|2QP1|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|158429721|pdb|2QAM|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429773|pdb|2QAO|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429831|pdb|2QBA|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429883|pdb|2QBC|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429935|pdb|2QBE|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429988|pdb|2QBG|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430041|pdb|2QBI|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430094|pdb|2QBK|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431394|pdb|2Z4L|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431447|pdb|2Z4N|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|168988732|pdb|2VHM|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) >gi|168988763|pdb|2VHN|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) >gi|169404603|pdb|2RDO|B Chain B, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound >gi|197107301|pdb|3DF2|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|197107353|pdb|3DF4|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|290560329|pdb|3KCR|8 Chain 8, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4 >gi|308198729|pdb|3ORB|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101. >gi|308388007|pdb|3OFQ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|308388038|pdb|3OFR|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. >gi|309320096|pdb|3OFD|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|329666014|pdb|3J01|8 Chain 8, Structure Of The Ribosome-Secye Complex In The Membrane Environment >gi|402550607|pdb|4GAR|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|402550662|pdb|4GAU|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|524934273|pdb|4KIX|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934341|pdb|4KIZ|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934404|pdb|4KJ1|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934483|pdb|4KJ3|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934551|pdb|4KJ5|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934613|pdb|4KJ7|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934678|pdb|4KJ9|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934740|pdb|4KJB|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|564730763|pdb|3J5O|A Chain A, Visualization Of Two Trnas Trapped In Transit During Ef-g-mediated Translocation (50s Subunit) >gi|597959819|pdb|3J5L|A Chain A, Structure Of The E. Coli 50s Subunit With Ermbl Nascent Chain</Hit_def> - <Hit_accession>2AW4_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>22</Hit_num> - <Hit_id>gi|83754118|pdb|2AWB|B</Hit_id> - <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|126031747|pdb|2J28|B Chain B, Model Of E. Coli Srp Bound To 70s Rncs >gi|157880574|pdb|1VS8|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def> - <Hit_accession>2AWB_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>23</Hit_num> - <Hit_id>gi|157880571|pdb|1VS6|B</Hit_id> - <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|209870354|pdb|3BBX|B Chain B, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex >gi|222447037|pdb|3DG0|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Ef-G-Bound Translocation Complex >gi|222447039|pdb|3DG2|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of A Pretranslocation Complex >gi|222447041|pdb|3DG4|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf1-Bound Termination Complex >gi|222447043|pdb|3DG5|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf3-Bound Termination Complex >gi|308198355|pdb|1VT2|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome.</Hit_def> - <Hit_accession>1VS6_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>24</Hit_num> - <Hit_id>gi|33357900|pdb|1P85|0</Hit_id> - <Hit_def>Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome >gi|33357927|pdb|1P86|0 Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome</Hit_def> - <Hit_accession>1P85_0</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>32.2105</Hsp_bit-score> - <Hsp_score>16</Hsp_score> - <Hsp_evalue>0.000791334</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>976</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>16</Hsp_identity> - <Hsp_positive>16</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>16</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2591</Hsp_hit-from> - <Hsp_hit-to>2598</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2027</Hsp_hit-from> - <Hsp_hit-to>2033</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>25</Hit_num> - <Hit_id>gi|7767146|pdb|1C2W|B</Hit_id> - <Hit_def>Chain B, 23s Rrna Structure Fitted To A Cryo-Electron Microscopic Map At 7.5 Angstroms Resolution</Hit_def> - <Hit_accession>1C2W_B</Hit_accession> - <Hit_len>2904</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>26.2635</Hsp_bit-score> - <Hsp_score>13</Hsp_score> - <Hsp_evalue>0.0488207</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>961</Hsp_hit-from> - <Hsp_hit-to>973</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>13</Hsp_identity> - <Hsp_positive>13</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>13</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> - <Hsp_hseq>CGTCCGTCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>839</Hsp_hit-from> - <Hsp_hit-to>845</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCGTGAA</Hsp_qseq> - <Hsp_hseq>TCGTGAA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>26</Hit_num> - <Hit_id>gi|582044940|pdb|3J62|AA</Hit_id> - <Hit_def>Chain a, Model Of The Large Subunit Rna Based On A 5.5 A Cryo-em Map Of Triticum Aestivum Translating 80s Ribosome</Hit_def> - <Hit_accession>3J62_AA</Hit_accession> - <Hit_len>3391</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2961</Hsp_hit-from> - <Hsp_hit-to>2969</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>2</Hsp_query-from> - <Hsp_query-to>9</Hsp_query-to> - <Hsp_hit-from>177</Hsp_hit-from> - <Hsp_hit-to>170</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTCCGTCG</Hsp_qseq> - <Hsp_hseq>GTCCGTCG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>553</Hsp_hit-from> - <Hsp_hit-to>559</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>2</Hsp_query-from> - <Hsp_query-to>8</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2042</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCCGTC</Hsp_qseq> - <Hsp_hseq>GTCCGTC</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2211</Hsp_hit-from> - <Hsp_hit-to>2217</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>27</Hit_num> - <Hit_id>gi|567755268|pdb|4CE4|A</Hit_id> - <Hit_def>Chain A, 39s Large Subunit Of The Porcine Mitochondrial Ribosome</Hit_def> - <Hit_accession>4CE4_A</Hit_accession> - <Hit_len>1570</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1020</Hsp_hit-from> - <Hsp_hit-to>1028</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>28</Hit_num> - <Hit_id>gi|558704783|pdb|4BYP|5</Hit_id> - <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> - <Hit_accession>4BYP_5</Hit_accession> - <Hit_len>3396</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2959</Hsp_hit-from> - <Hsp_hit-to>2967</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1634</Hsp_hit-from> - <Hsp_hit-to>1627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2435</Hsp_hit-from> - <Hsp_hit-to>2442</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1100</Hsp_hit-from> - <Hsp_hit-to>1106</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2216</Hsp_hit-from> - <Hsp_hit-to>2222</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>29</Hit_num> - <Hit_id>gi|558704825|pdb|4BYW|5</Hit_id> - <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> - <Hit_accession>4BYW_5</Hit_accession> - <Hit_len>3396</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2959</Hsp_hit-from> - <Hsp_hit-to>2967</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1634</Hsp_hit-from> - <Hsp_hit-to>1627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2435</Hsp_hit-from> - <Hsp_hit-to>2442</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1100</Hsp_hit-from> - <Hsp_hit-to>1106</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2216</Hsp_hit-from> - <Hsp_hit-to>2222</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>30</Hit_num> - <Hit_id>gi|551701574|pdb|3J44|1</Hit_id> - <Hit_def>Chain 1, Structure Of The Methanococcus Jannaschii Ribosome-secyebeta Channel Complex (50s Ribosomal Subunit)</Hit_def> - <Hit_accession>3J44_1</Hit_accession> - <Hit_len>3049</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>651</Hsp_hit-from> - <Hsp_hit-to>663</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>12</Hsp_identity> - <Hsp_positive>12</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>13</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> - <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq> - <Hsp_midline>|||||||| ||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2705</Hsp_hit-from> - <Hsp_hit-to>2713</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>31</Hit_num> - <Hit_id>gi|508123724|pdb|4HUB|0</Hit_id> - <Hit_def>Chain 0, The Re-refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution: More Complete Structure Of The L7/l12 And L1 Stalk, L5 And Lx Proteins</Hit_def> - <Hit_accession>4HUB_0</Hit_accession> - <Hit_len>2910</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>298</Hsp_hit-from> - <Hsp_hit-to>290</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2618</Hsp_hit-from> - <Hsp_hit-to>2626</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2599</Hsp_hit-from> - <Hsp_hit-to>2605</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>32</Hit_num> - <Hit_id>gi|485601478|pdb|3J3F|5</Hit_id> - <Hit_def>Chain 5, Structure Of The H. Sapiens 60s Rrna</Hit_def> - <Hit_accession>3J3F_5</Hit_accession> - <Hit_len>5070</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>4536</Hsp_hit-from> - <Hsp_hit-to>4544</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>8</Hsp_query-to> - <Hsp_hit-from>765</Hsp_hit-from> - <Hsp_hit-to>772</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCCGTC</Hsp_qseq> - <Hsp_hseq>CGTCCGTC</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>8</Hsp_query-to> - <Hsp_hit-from>769</Hsp_hit-from> - <Hsp_hit-to>776</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCCGTC</Hsp_qseq> - <Hsp_hseq>CGTCCGTC</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>8</Hsp_query-to> - <Hsp_hit-from>773</Hsp_hit-from> - <Hsp_hit-to>780</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCCGTC</Hsp_qseq> - <Hsp_hseq>CGTCCGTC</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>8</Hsp_query-to> - <Hsp_hit-from>777</Hsp_hit-from> - <Hsp_hit-to>784</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCCGTC</Hsp_qseq> - <Hsp_hseq>CGTCCGTC</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>6</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>3939</Hsp_hit-from> - <Hsp_hit-to>3946</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>7</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>393</Hsp_hit-from> - <Hsp_hit-to>399</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>8</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>3720</Hsp_hit-from> - <Hsp_hit-to>3726</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>33</Hit_num> - <Hit_id>gi|485601474|pdb|3J3E|5</Hit_id> - <Hit_def>Chain 5, Structure Of The D. Melanogaster 60s Rrna</Hit_def> - <Hit_accession>3J3E_5</Hit_accession> - <Hit_len>3970</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>3490</Hsp_hit-from> - <Hsp_hit-to>3498</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2177</Hsp_hit-from> - <Hsp_hit-to>2184</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2594</Hsp_hit-from> - <Hsp_hit-to>2600</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>7</Hsp_query-to> - <Hsp_hit-from>3627</Hsp_hit-from> - <Hsp_hit-to>3633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CGTCCGT</Hsp_qseq> - <Hsp_hseq>CGTCCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>34</Hit_num> - <Hit_id>gi|449802187|pdb|3ZEX|B</Hit_id> - <Hit_def>Chain B, High_resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome</Hit_def> - <Hit_accession>3ZEX_B</Hit_accession> - <Hit_len>1465</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>1334</Hsp_hit-from> - <Hsp_hit-to>1342</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>705</Hsp_hit-from> - <Hsp_hit-to>711</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>35</Hit_num> - <Hit_id>gi|428697991|pdb|3J2L|1</Hit_id> - <Hit_def>Chain 1, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Rna)</Hit_def> - <Hit_accession>3J2L_1</Hit_accession> - <Hit_len>3049</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>13</Hsp_query-to> - <Hsp_hit-from>651</Hsp_hit-from> - <Hsp_hit-to>663</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>12</Hsp_identity> - <Hsp_positive>12</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>13</Hsp_align-len> - <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> - <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq> - <Hsp_midline>|||||||| ||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2705</Hsp_hit-from> - <Hsp_hit-to>2713</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>36</Hit_num> - <Hit_id>gi|392311504|pdb|3OW2|0</Hit_id> - <Hit_def>Chain 0, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit</Hit_def> - <Hit_accession>3OW2_0</Hit_accession> - <Hit_len>2902</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2613</Hsp_hit-from> - <Hsp_hit-to>2621</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2594</Hsp_hit-from> - <Hsp_hit-to>2600</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>37</Hit_num> - <Hit_id>gi|374977932|pdb|4ADX|0</Hit_id> - <Hit_def>Chain 0, The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6</Hit_def> - <Hit_accession>4ADX_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>38</Hit_num> - <Hit_id>gi|364506133|pdb|3U5F|6</Hit_id> - <Hit_def>Chain 6, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome B</Hit_def> - <Hit_accession>3U5F_6</Hit_accession> - <Hit_len>1800</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1528</Hsp_hit-from> - <Hsp_hit-to>1536</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>1006</Hsp_hit-from> - <Hsp_hit-to>1012</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1569</Hsp_hit-from> - <Hsp_hit-to>1563</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>39</Hit_num> - <Hit_id>gi|364506095|pdb|3U5B|2</Hit_id> - <Hit_def>Chain 2, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome A >gi|558704782|pdb|4BYO|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex >gi|558704824|pdb|4BYV|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> - <Hit_accession>3U5B_2</Hit_accession> - <Hit_len>1800</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1528</Hsp_hit-from> - <Hsp_hit-to>1536</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>1006</Hsp_hit-from> - <Hsp_hit-to>1012</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1569</Hsp_hit-from> - <Hsp_hit-to>1563</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>40</Hit_num> - <Hit_id>gi|358440203|pdb|4A1D|1</Hit_id> - <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4.</Hit_def> - <Hit_accession>4A1D_1</Hit_accession> - <Hit_len>3119</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2280</Hsp_hit-from> - <Hsp_hit-to>2288</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2714</Hsp_hit-from> - <Hsp_hit-to>2722</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>14</Hsp_query-to> - <Hsp_hit-from>2838</Hsp_hit-from> - <Hsp_hit-to>2844</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CGTGAAG</Hsp_qseq> - <Hsp_hseq>CGTGAAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>41</Hit_num> - <Hit_id>gi|358440111|pdb|4A18|1</Hit_id> - <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1</Hit_def> - <Hit_accession>4A18_1</Hit_accession> - <Hit_len>3354</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2513</Hsp_hit-from> - <Hsp_hit-to>2521</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2947</Hsp_hit-from> - <Hsp_hit-to>2955</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>14</Hsp_query-to> - <Hsp_hit-from>3071</Hsp_hit-from> - <Hsp_hit-to>3077</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CGTGAAG</Hsp_qseq> - <Hsp_hseq>CGTGAAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>42</Hit_num> - <Hit_id>gi|358440157|pdb|4A1B|1</Hit_id> - <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3. >gi|359807703|pdb|4A19|1 Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 2.</Hit_def> - <Hit_accession>4A1B_1</Hit_accession> - <Hit_len>3354</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2513</Hsp_hit-from> - <Hsp_hit-to>2521</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2947</Hsp_hit-from> - <Hsp_hit-to>2955</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>14</Hsp_query-to> - <Hsp_hit-from>3071</Hsp_hit-from> - <Hsp_hit-to>3077</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CGTGAAG</Hsp_qseq> - <Hsp_hseq>CGTGAAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>43</Hit_num> - <Hit_id>gi|357380452|pdb|3J0L|8</Hit_id> - <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1</Hit_def> - <Hit_accession>3J0L_8</Hit_accession> - <Hit_len>20</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>3</Hsp_hit-from> - <Hsp_hit-to>11</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>44</Hit_num> - <Hit_id>gi|357380483|pdb|3J0O|8</Hit_id> - <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</Hit_def> - <Hit_accession>3J0O_8</Hit_accession> - <Hit_len>20</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>3</Hsp_hit-from> - <Hsp_hit-to>11</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>45</Hit_num> - <Hit_id>gi|315113523|pdb|3O58|1</Hit_id> - <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. >gi|418837761|pdb|4B6B|5 Chain 5, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex With Arx1 And Rei1 >gi|597959861|pdb|3J64|1 Chain 1, Arx1 Pre-60s Particle. This Entry Contains The Rrna.</Hit_def> - <Hit_accession>3O58_1</Hit_accession> - <Hit_len>3396</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2959</Hsp_hit-from> - <Hsp_hit-to>2967</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1634</Hsp_hit-from> - <Hsp_hit-to>1627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2435</Hsp_hit-from> - <Hsp_hit-to>2442</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1100</Hsp_hit-from> - <Hsp_hit-to>1106</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2216</Hsp_hit-from> - <Hsp_hit-to>2222</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>46</Hit_num> - <Hit_id>gi|315113568|pdb|3O5H|1</Hit_id> - <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit. >gi|364506130|pdb|3U5D|1 Chain 1, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome A >gi|364506168|pdb|3U5H|5 Chain 5, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome B</Hit_def> - <Hit_accession>3O5H_1</Hit_accession> - <Hit_len>3396</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2959</Hsp_hit-from> - <Hsp_hit-to>2967</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1634</Hsp_hit-from> - <Hsp_hit-to>1627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2435</Hsp_hit-from> - <Hsp_hit-to>2442</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1100</Hsp_hit-from> - <Hsp_hit-to>1106</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2216</Hsp_hit-from> - <Hsp_hit-to>2222</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>47</Hit_num> - <Hit_id>gi|315113447|pdb|3O2Z|1</Hit_id> - <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit.</Hit_def> - <Hit_accession>3O2Z_1</Hit_accession> - <Hit_len>1800</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1528</Hsp_hit-from> - <Hsp_hit-to>1536</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>1006</Hsp_hit-from> - <Hsp_hit-to>1012</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1569</Hsp_hit-from> - <Hsp_hit-to>1563</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>48</Hit_num> - <Hit_id>gi|315113475|pdb|3O30|1</Hit_id> - <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit.</Hit_def> - <Hit_accession>3O30_1</Hit_accession> - <Hit_len>1800</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1528</Hsp_hit-from> - <Hsp_hit-to>1536</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>1006</Hsp_hit-from> - <Hsp_hit-to>1012</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1569</Hsp_hit-from> - <Hsp_hit-to>1563</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>49</Hit_num> - <Hit_id>gi|313103747|pdb|3IZF|A</Hit_id> - <Hit_def>Chain A, Model Of The Large Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome (With Es27l-In Conformation)</Hit_def> - <Hit_accession>3IZF_A</Hit_accession> - <Hit_len>3396</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2959</Hsp_hit-from> - <Hsp_hit-to>2967</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1634</Hsp_hit-from> - <Hsp_hit-to>1627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2435</Hsp_hit-from> - <Hsp_hit-to>2442</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1100</Hsp_hit-from> - <Hsp_hit-to>1106</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2216</Hsp_hit-from> - <Hsp_hit-to>2222</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>50</Hit_num> - <Hit_id>gi|313103744|pdb|3IZE|A</Hit_id> - <Hit_def>Chain A, Model Of The Small Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome</Hit_def> - <Hit_accession>3IZE_A</Hit_accession> - <Hit_len>1800</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1528</Hsp_hit-from> - <Hsp_hit-to>1536</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>1006</Hsp_hit-from> - <Hsp_hit-to>1012</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1569</Hsp_hit-from> - <Hsp_hit-to>1563</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>51</Hit_num> - <Hit_id>gi|296278448|pdb|3KO2|I</Hit_id> - <Hit_def>Chain I, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> - <Hit_accession>3KO2_I</Hit_accession> - <Hit_len>24</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>19</Hsp_hit-from> - <Hsp_hit-to>11</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>52</Hit_num> - <Hit_id>gi|296278447|pdb|3KO2|H</Hit_id> - <Hit_def>Chain H, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> - <Hit_accession>3KO2_H</Hit_accession> - <Hit_len>24</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>6</Hsp_hit-from> - <Hsp_hit-to>14</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>53</Hit_num> - <Hit_id>gi|296278444|pdb|3KO2|D</Hit_id> - <Hit_def>Chain D, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> - <Hit_accession>3KO2_D</Hit_accession> - <Hit_len>24</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>19</Hsp_hit-from> - <Hsp_hit-to>11</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>54</Hit_num> - <Hit_id>gi|296278443|pdb|3KO2|C</Hit_id> - <Hit_def>Chain C, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> - <Hit_accession>3KO2_C</Hit_accession> - <Hit_len>24</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>6</Hsp_hit-from> - <Hsp_hit-to>14</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>55</Hit_num> - <Hit_id>gi|290790096|pdb|3I56|0</Hit_id> - <Hit_def>Chain 0, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit</Hit_def> - <Hit_accession>3I56_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>56</Hit_num> - <Hit_id>gi|281500859|pdb|3JYX|5</Hit_id> - <Hit_def>Chain 5, Structure Of The 60s Rrna For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def> - <Hit_accession>3JYX_5</Hit_accession> - <Hit_len>3170</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2740</Hsp_hit-from> - <Hsp_hit-to>2748</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1587</Hsp_hit-from> - <Hsp_hit-to>1580</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2222</Hsp_hit-from> - <Hsp_hit-to>2229</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>1344</Hsp_hit-from> - <Hsp_hit-to>1350</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2003</Hsp_hit-from> - <Hsp_hit-to>2009</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>57</Hit_num> - <Hit_id>gi|281500807|pdb|3JYV|A</Hit_id> - <Hit_def>Chain A, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def> - <Hit_accession>3JYV_A</Hit_accession> - <Hit_len>1761</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>11</Hsp_query-to> - <Hsp_hit-from>1492</Hsp_hit-from> - <Hsp_hit-to>1500</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCCGTCGTG</Hsp_qseq> - <Hsp_hseq>TCCGTCGTG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>981</Hsp_hit-from> - <Hsp_hit-to>987</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1533</Hsp_hit-from> - <Hsp_hit-to>1527</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>58</Hit_num> - <Hit_id>gi|259090425|pdb|1S1I|3</Hit_id> - <Hit_def>Chain 3, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h.</Hit_def> - <Hit_accession>1S1I_3</Hit_accession> - <Hit_len>2999</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2710</Hsp_hit-from> - <Hsp_hit-to>2718</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2691</Hsp_hit-from> - <Hsp_hit-to>2697</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>59</Hit_num> - <Hit_id>gi|208435493|pdb|2QEX|0</Hit_id> - <Hit_def>Chain 0, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit</Hit_def> - <Hit_accession>2QEX_0</Hit_accession> - <Hit_len>2772</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2476</Hsp_hit-from> - <Hsp_hit-to>2484</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2457</Hsp_hit-from> - <Hsp_hit-to>2463</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>60</Hit_num> - <Hit_id>gi|194368703|pdb|3CPW|0</Hit_id> - <Hit_def>Chain 0, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> - <Hit_accession>3CPW_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>61</Hit_num> - <Hit_id>gi|188596372|pdb|3CCV|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a >gi|188596403|pdb|3CD6|0 Chain 0, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With Cc-puromycin</Hit_def> - <Hit_accession>3CCV_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>62</Hit_num> - <Hit_id>gi|188596341|pdb|3CCU|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c</Hit_def> - <Hit_accession>3CCU_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>63</Hit_num> - <Hit_id>gi|188596310|pdb|3CCS|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a</Hit_def> - <Hit_accession>3CCS_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>64</Hit_num> - <Hit_id>gi|188596279|pdb|3CCR|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.</Hit_def> - <Hit_accession>3CCR_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>65</Hit_num> - <Hit_id>gi|188596248|pdb|3CCQ|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u</Hit_def> - <Hit_accession>3CCQ_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>66</Hit_num> - <Hit_id>gi|188596217|pdb|3CCM|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u</Hit_def> - <Hit_accession>3CCM_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>67</Hit_num> - <Hit_id>gi|188596186|pdb|3CCL|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.</Hit_def> - <Hit_accession>3CCL_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>68</Hit_num> - <Hit_id>gi|188596155|pdb|3CCJ|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u</Hit_def> - <Hit_accession>3CCJ_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>69</Hit_num> - <Hit_id>gi|188596124|pdb|3CCE|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a</Hit_def> - <Hit_accession>3CCE_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>70</Hit_num> - <Hit_id>gi|188596093|pdb|3CC7|0</Hit_id> - <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u</Hit_def> - <Hit_accession>3CC7_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>71</Hit_num> - <Hit_id>gi|188596031|pdb|3CC2|0</Hit_id> - <Hit_def>Chain 0, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins >gi|188596062|pdb|3CC4|0 Chain 0, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|206581937|pdb|3CMA|0 Chain 0, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|206581970|pdb|3CME|0 Chain 0, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|228312141|pdb|3G4S|0 Chain 0, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit >gi|228312197|pdb|3G6E|0 Chain 0, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit >gi|228312233|pdb|3G71|0 Chain 0, Co-crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit >gi|290790035|pdb|3I55|0 Chain 0, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit</Hit_def> - <Hit_accession>3CC2_0</Hit_accession> - <Hit_len>2923</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>72</Hit_num> - <Hit_id>gi|187609272|pdb|2ZKR|0</Hit_id> - <Hit_def>Chain 0, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map</Hit_def> - <Hit_accession>2ZKR_0</Hit_accession> - <Hit_len>2903</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2623</Hsp_hit-from> - <Hsp_hit-to>2631</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>2111</Hsp_hit-from> - <Hsp_hit-to>2118</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>GTGAAGAG</Hsp_qseq> - <Hsp_hseq>GTGAAGAG</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>353</Hsp_hit-from> - <Hsp_hit-to>359</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1892</Hsp_hit-from> - <Hsp_hit-to>1898</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>73</Hit_num> - <Hit_id>gi|171848835|pdb|2QA4|0</Hit_id> - <Hit_def>Chain 0, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit</Hit_def> - <Hit_accession>2QA4_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>74</Hit_num> - <Hit_id>gi|99032306|pdb|2FTC|R</Hit_id> - <Hit_def>Chain R, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome</Hit_def> - <Hit_accession>2FTC_R</Hit_accession> - <Hit_len>1568</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>1032</Hsp_hit-from> - <Hsp_hit-to>1040</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CGTGAAGAG</Hsp_qseq> - <Hsp_hseq>CGTGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>75</Hit_num> - <Hit_id>gi|50513468|pdb|1S72|0</Hit_id> - <Hit_def>Chain 0, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|83753123|pdb|1VQ4|0 Chain 0, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753155|pdb|1VQ5|0 Chain 0, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753187|pdb|1VQ6|0 Chain 0, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753219|pdb|1VQ7|0 Chain 0, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753251|pdb|1VQ8|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753282|pdb|1VQ9|0 Chain 0, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753314|pdb|1VQK|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui >gi|83753345|pdb|1VQL|0 Chain 0, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753376|pdb|1VQM|0 Chain 0, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753407|pdb|1VQN|0 Chain 0, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753439|pdb|1VQO|0 Chain 0, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui >gi|83753470|pdb|1VQP|0 Chain 0, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|145580171|pdb|2OTJ|0 Chain 0, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui >gi|145580202|pdb|2OTL|0 Chain 0, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui</Hit_def> - <Hit_accession>1S72_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>76</Hit_num> - <Hit_id>gi|66360881|pdb|1YIT|0</Hit_id> - <Hit_def>Chain 0, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360914|pdb|1YJ9|0 Chain 0, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22</Hit_def> - <Hit_accession>1YIT_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>77</Hit_num> - <Hit_id>gi|66360782|pdb|1YHQ|0</Hit_id> - <Hit_def>Chain 0, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360815|pdb|1YI2|0 Chain 0, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360848|pdb|1YIJ|0 Chain 0, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360947|pdb|1YJN|0 Chain 0, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> - <Hit_accession>1YHQ_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>78</Hit_num> - <Hit_id>gi|66360980|pdb|1YJW|0</Hit_id> - <Hit_def>Chain 0, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> - <Hit_accession>1YJW_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>7</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>305</Hsp_hit-from> - <Hsp_hit-to>297</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>TCGTGAAGA</Hsp_qseq> - <Hsp_hseq>TCGTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2625</Hsp_hit-from> - <Hsp_hit-to>2633</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2606</Hsp_hit-from> - <Hsp_hit-to>2612</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>79</Hit_num> - <Hit_id>gi|37928006|pdb|1Q86|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.</Hit_def> - <Hit_accession>1Q86_A</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>80</Hit_num> - <Hit_id>gi|15825941|pdb|1JJ2|0</Hit_id> - <Hit_def>Chain 0, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|20150986|pdb|1KQS|0 Chain 0, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis >gi|22219324|pdb|1M1K|A Chain A, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|24159019|pdb|1M90|A Chain A, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit >gi|34811116|pdb|1K73|A Chain A, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|34811185|pdb|1N8R|A Chain A, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M >gi|34811215|pdb|1NJI|A Chain A, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit >gi|37927899|pdb|1Q7Y|A Chain A, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit >gi|37927934|pdb|1Q81|A Chain A, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. >gi|37927970|pdb|1Q82|A Chain A, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit >gi|39654670|pdb|1QVF|0 Chain 0, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|39654701|pdb|1QVG|0 Chain 0, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|157878615|pdb|1K8A|A Chain A, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878625|pdb|1K9M|A Chain A, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878639|pdb|1KD1|A Chain A, Co-crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157880605|pdb|1W2B|0 Chain 0, Trigger Factor Ribosome Binding Domain In Complex With 50s >gi|228311909|pdb|3CXC|0 Chain 0, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui</Hit_def> - <Hit_accession>1JJ2_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>81</Hit_num> - <Hit_id>gi|34811146|pdb|1KC8|A</Hit_id> - <Hit_def>Chain A, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit</Hit_def> - <Hit_accession>1KC8_A</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>82</Hit_num> - <Hit_id>gi|10120918|pdb|1FFK|0</Hit_id> - <Hit_def>Chain 0, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution</Hit_def> - <Hit_accession>1FFK_0</Hit_accession> - <Hit_len>2922</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2624</Hsp_hit-from> - <Hsp_hit-to>2632</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2605</Hsp_hit-from> - <Hsp_hit-to>2611</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>83</Hit_num> - <Hit_id>gi|10120728|pdb|1FG0|A</Hit_id> - <Hit_def>Chain A, Large Ribosomal Subunit Complexed With A 13 Bp Minihelix- Puromycin Compound</Hit_def> - <Hit_accession>1FG0_A</Hit_accession> - <Hit_len>602</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>563</Hsp_hit-from> - <Hsp_hit-to>571</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>544</Hsp_hit-from> - <Hsp_hit-to>550</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>84</Hit_num> - <Hit_id>gi|10120727|pdb|1FFZ|A</Hit_id> - <Hit_def>Chain A, Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin</Hit_def> - <Hit_accession>1FFZ_A</Hit_accession> - <Hit_len>602</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>18.3341</Hsp_bit-score> - <Hsp_score>9</Hsp_score> - <Hsp_evalue>11.9013</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>563</Hsp_hit-from> - <Hsp_hit-to>571</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>9</Hsp_identity> - <Hsp_positive>9</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>9</Hsp_align-len> - <Hsp_qseq>CCGTCGTGA</Hsp_qseq> - <Hsp_hseq>CCGTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>6</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>544</Hsp_hit-from> - <Hsp_hit-to>550</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTCGTGA</Hsp_qseq> - <Hsp_hseq>GTCGTGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>85</Hit_num> - <Hit_id>gi|558705015|pdb|4LGT|F</Hit_id> - <Hit_def>Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def> - <Hit_accession>4LGT_F</Hit_accession> - <Hit_len>21</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>5</Hsp_hit-from> - <Hsp_hit-to>12</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>86</Hit_num> - <Hit_id>gi|558705013|pdb|4LGT|E</Hit_id> - <Hit_def>Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def> - <Hit_accession>4LGT_E</Hit_accession> - <Hit_len>21</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>5</Hsp_hit-from> - <Hsp_hit-to>12</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>87</Hit_num> - <Hit_id>gi|529280935|pdb|4BTD|A</Hit_id> - <Hit_def>Chain A, Thermus Thermophilus Ribosome</Hit_def> - <Hit_accession>4BTD_A</Hit_accession> - <Hit_len>2915</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2055</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2603</Hsp_hit-from> - <Hsp_hit-to>2610</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>88</Hit_num> - <Hit_id>gi|528082310|pdb|4L6J|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The First 70s Ribosome. >gi|528082364|pdb|4L6L|A Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The Second 70s Ribosome</Hit_def> - <Hit_accession>4L6J_A</Hit_accession> - <Hit_len>2879</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2021</Hsp_hit-from> - <Hsp_hit-to>2028</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2576</Hsp_hit-from> - <Hsp_hit-to>2583</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>89</Hit_num> - <Hit_id>gi|520729408|pdb|4KFI|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The A Subunit >gi|520729463|pdb|4KFL|A Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The B Subunit</Hit_def> - <Hit_accession>4KFI_A</Hit_accession> - <Hit_len>2879</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2021</Hsp_hit-from> - <Hsp_hit-to>2028</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2576</Hsp_hit-from> - <Hsp_hit-to>2583</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>90</Hit_num> - <Hit_id>gi|520728860|pdb|4K0Q|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def> - <Hit_accession>4K0Q_A</Hit_accession> - <Hit_len>2915</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2055</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2603</Hsp_hit-from> - <Hsp_hit-to>2610</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>91</Hit_num> - <Hit_id>gi|520728802|pdb|4K0M|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def> - <Hit_accession>4K0M_A</Hit_accession> - <Hit_len>2915</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2055</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2603</Hsp_hit-from> - <Hsp_hit-to>2610</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>92</Hit_num> - <Hit_id>gi|512125286|pdb|3J3V|A</Hit_id> - <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state I-a)</Hit_def> - <Hit_accession>3J3V_A</Hit_accession> - <Hit_len>2927</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2620</Hsp_hit-from> - <Hsp_hit-to>2627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>340</Hsp_hit-from> - <Hsp_hit-to>346</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>9</Hsp_query-to> - <Hsp_hit-from>440</Hsp_hit-from> - <Hsp_hit-to>446</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCCGTCG</Hsp_qseq> - <Hsp_hseq>TCCGTCG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2056</Hsp_hit-from> - <Hsp_hit-to>2062</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>9</Hsp_query-to> - <Hsp_hit-from>2644</Hsp_hit-from> - <Hsp_hit-to>2650</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCCGTCG</Hsp_qseq> - <Hsp_hseq>TCCGTCG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>93</Hit_num> - <Hit_id>gi|512125306|pdb|3J3W|A</Hit_id> - <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state Ii-a)</Hit_def> - <Hit_accession>3J3W_A</Hit_accession> - <Hit_len>2927</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2620</Hsp_hit-from> - <Hsp_hit-to>2627</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>10</Hsp_query-from> - <Hsp_query-to>16</Hsp_query-to> - <Hsp_hit-from>340</Hsp_hit-from> - <Hsp_hit-to>346</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TGAAGAG</Hsp_qseq> - <Hsp_hseq>TGAAGAG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>9</Hsp_query-to> - <Hsp_hit-from>440</Hsp_hit-from> - <Hsp_hit-to>446</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCCGTCG</Hsp_qseq> - <Hsp_hseq>TCCGTCG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>9</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2056</Hsp_hit-from> - <Hsp_hit-to>2062</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>GTGAAGA</Hsp_qseq> - <Hsp_hseq>GTGAAGA</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>3</Hsp_query-from> - <Hsp_query-to>9</Hsp_query-to> - <Hsp_hit-from>2644</Hsp_hit-from> - <Hsp_hit-to>2650</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>TCCGTCG</Hsp_qseq> - <Hsp_hseq>TCCGTCG</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>94</Hit_num> - <Hit_id>gi|482676744|pdb|3V6X|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit</Hit_def> - <Hit_accession>3V6X_A</Hit_accession> - <Hit_len>2916</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2055</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2603</Hsp_hit-from> - <Hsp_hit-to>2610</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>95</Hit_num> - <Hit_id>gi|482676712|pdb|3V6W|A</Hit_id> - <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit</Hit_def> - <Hit_accession>3V6W_A</Hit_accession> - <Hit_len>2916</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>2048</Hsp_hit-from> - <Hsp_hit-to>2055</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2603</Hsp_hit-from> - <Hsp_hit-to>2610</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>96</Hit_num> - <Hit_id>gi|428697829|pdb|2YMI|DD</Hit_id> - <Hit_def>Chain d, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def> - <Hit_accession>2YMI_DD</Hit_accession> - <Hit_len>56</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>52</Hsp_hit-from> - <Hsp_hit-to>45</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>-1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>97</Hit_num> - <Hit_id>gi|428697789|pdb|2YMF|A</Hit_id> - <Hit_def>Chain A, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def> - <Hit_accession>2YMF_A</Hit_accession> - <Hit_len>4896</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>575</Hsp_hit-from> - <Hsp_hit-to>582</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>14.3694</Hsp_bit-score> - <Hsp_score>7</Hsp_score> - <Hsp_evalue>185.82</Hsp_evalue> - <Hsp_query-from>4</Hsp_query-from> - <Hsp_query-to>10</Hsp_query-to> - <Hsp_hit-from>561</Hsp_hit-from> - <Hsp_hit-to>567</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>7</Hsp_identity> - <Hsp_positive>7</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>7</Hsp_align-len> - <Hsp_qseq>CCGTCGT</Hsp_qseq> - <Hsp_hseq>CCGTCGT</Hsp_hseq> - <Hsp_midline>|||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>98</Hit_num> - <Hit_id>gi|396639330|pdb|2J01|A</Hit_id> - <Hit_def>Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. >gi|396639355|pdb|2J03|A Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii.</Hit_def> - <Hit_accession>2J01_A</Hit_accession> - <Hit_len>2787</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>8</Hsp_query-from> - <Hsp_query-to>15</Hsp_query-to> - <Hsp_hit-from>1948</Hsp_hit-from> - <Hsp_hit-to>1955</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTGAAGA</Hsp_qseq> - <Hsp_hseq>CGTGAAGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>2474</Hsp_hit-from> - <Hsp_hit-to>2481</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>99</Hit_num> - <Hit_id>gi|393715375|pdb|4AQX|C</Hit_id> - <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Magnesium</Hit_def> - <Hit_accession>4AQX_C</Hit_accession> - <Hit_len>14</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>7</Hsp_hit-from> - <Hsp_hit-to>14</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -<Hit> - <Hit_num>100</Hit_num> - <Hit_id>gi|393715371|pdb|4AQU|C</Hit_id> - <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium</Hit_def> - <Hit_accession>4AQU_C</Hit_accession> - <Hit_len>24</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>16.3517</Hsp_bit-score> - <Hsp_score>8</Hsp_score> - <Hsp_evalue>47.0266</Hsp_evalue> - <Hsp_query-from>5</Hsp_query-from> - <Hsp_query-to>12</Hsp_query-to> - <Hsp_hit-from>7</Hsp_hit-from> - <Hsp_hit-to>14</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>8</Hsp_identity> - <Hsp_positive>8</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>8</Hsp_align-len> - <Hsp_qseq>CGTCGTGA</Hsp_qseq> - <Hsp_hseq>CGTCGTGA</Hsp_hseq> - <Hsp_midline>||||||||</Hsp_midline> - </Hsp> - </Hit_hsps> -</Hit> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>8975</Statistics_db-num> - <Statistics_db-len>885284</Statistics_db-len> - <Statistics_hsp-len>0</Statistics_hsp-len> - <Statistics_eff-space>0</Statistics_eff-space> - <Statistics_kappa>0.710602795216363</Statistics_kappa> - <Statistics_lambda>1.37406312246009</Statistics_lambda> - <Statistics_entropy>1.30724660390929</Statistics_entropy> - </Statistics> - </Iteration_stat> -</Iteration> -</BlastOutput_iterations> -</BlastOutput> -
--- a/example_xmls/blast xml example2.xml Thu May 15 16:46:30 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,44 +0,0 @@ -<?xml version="1.0"?> -<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> -<BlastOutput> - <BlastOutput_program>blastn</BlastOutput_program> - <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> - <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> - <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db> - <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> - <BlastOutput_query-def>No definition line</BlastOutput_query-def> - <BlastOutput_query-len>16</BlastOutput_query-len> - <BlastOutput_param> - <Parameters> - <Parameters_expect>0.001</Parameters_expect> - <Parameters_sc-match>2</Parameters_sc-match> - <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> - <Parameters_gap-open>5</Parameters_gap-open> - <Parameters_gap-extend>2</Parameters_gap-extend> - <Parameters_filter>L;m;</Parameters_filter> - </Parameters> - </BlastOutput_param> -<BlastOutput_iterations> -<Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>No definition line</Iteration_query-def> - <Iteration_query-len>16</Iteration_query-len> -<Iteration_hits> -</Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>28813188</Statistics_db-num> - <Statistics_db-len>53027764389</Statistics_db-len> - <Statistics_hsp-len>13</Statistics_hsp-len> - <Statistics_eff-space>157959578835</Statistics_eff-space> - <Statistics_kappa>0.41</Statistics_kappa> - <Statistics_lambda>0.625</Statistics_lambda> - <Statistics_entropy>0.78</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> -</Iteration> -</BlastOutput_iterations> -</BlastOutput> -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Galaxy19-[blastn_EUginius_primers_probes.fasta_vs_EUginius_plasmid_insert.fasta_].blastxml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,1387 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db></BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def> + <BlastOutput_query-len>20</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_sc-match>2</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>L;m;</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_3</Hit_id> + <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> + <Hit_accession>Subject_3</Hit_accession> + <Hit_len>323</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>7.01052e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>200</Hsp_hit-from> + <Hsp_hit-to>219</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> + <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_6</Hit_id> + <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> + <Hit_accession>Subject_6</Hit_accession> + <Hit_len>2457</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>7.01052e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2119</Hsp_hit-from> + <Hsp_hit-to>2138</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> + <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>9</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>12</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_2</Hit_id> + <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</Hit_def> + <Hit_accession>Subject_2</Hit_accession> + <Hit_len>1045</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>31.9436</Hsp_bit-score> + <Hsp_score>34</Hsp_score> + <Hsp_evalue>2.98095e-06</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2</Hsp_hit-from> + <Hsp_hit-to>18</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>17</Hsp_identity> + <Hsp_positive>17</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>17</Hsp_align-len> + <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>|||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>19</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_3</Hit_id> + <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> + <Hit_accession>Subject_3</Hit_accession> + <Hit_len>323</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>7.01052e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>224</Hsp_hit-from> + <Hsp_hit-to>243</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_6</Hit_id> + <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> + <Hit_accession>Subject_6</Hit_accession> + <Hit_len>2457</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>7.01052e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2143</Hsp_hit-from> + <Hsp_hit-to>2162</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>25</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>26</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>27</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>28</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>29</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>30</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>31</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>32</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>15375</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>33</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>34</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>35</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>36</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>37</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>38</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>39</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>40</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>12312</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>41</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>42</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>43</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>44</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>45</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>46</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>47</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_7</Hit_id> + <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> + <Hit_accession>Subject_7</Hit_accession> + <Hit_len>4180</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>9.33825e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>25</Hsp_query-to> + <Hsp_hit-from>1541</Hsp_hit-from> + <Hsp_hit-to>1565</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>23</Hsp_identity> + <Hsp_positive>23</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>25</Hsp_align-len> + <Hsp_qseq>ACATGAACAGCGCCTTGACCACAGC</Hsp_qseq> + <Hsp_hseq>ACATGAACAGCGCCCTGACCACCGC</Hsp_hseq> + <Hsp_midline>|||||||||||||| ||||||| ||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>48</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_8</Hit_id> + <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> + <Hit_accession>Subject_8</Hit_accession> + <Hit_len>4983</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>37.3537</Hsp_bit-score> + <Hsp_score>40</Hsp_score> + <Hsp_evalue>9.33825e-08</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>25</Hsp_query-to> + <Hsp_hit-from>2344</Hsp_hit-from> + <Hsp_hit-to>2368</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>23</Hsp_identity> + <Hsp_positive>23</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>25</Hsp_align-len> + <Hsp_qseq>ACATGAACAGCGCCTTGACCACAGC</Hsp_qseq> + <Hsp_hseq>ACATGAACAGCGCCCTGACCACCGC</Hsp_hseq> + <Hsp_midline>|||||||||||||| ||||||| ||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>16400</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>49</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>50</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>51</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>52</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>53</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>54</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>55</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_7</Hit_id> + <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> + <Hit_accession>Subject_7</Hit_accession> + <Hit_len>4180</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>89.6514</Hsp_bit-score> + <Hsp_score>98</Hsp_score> + <Hsp_evalue>6.62923e-23</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>74</Hsp_query-to> + <Hsp_hit-from>1516</Hsp_hit-from> + <Hsp_hit-to>1589</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>64</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>74</Hsp_align-len> + <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> + <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> + <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>56</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_8</Hit_id> + <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> + <Hit_accession>Subject_8</Hit_accession> + <Hit_len>4983</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>89.6514</Hsp_bit-score> + <Hsp_score>98</Hsp_score> + <Hsp_evalue>6.62923e-23</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>74</Hsp_query-to> + <Hsp_hit-from>2319</Hsp_hit-from> + <Hsp_hit-to>2392</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>64</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>74</Hsp_align-len> + <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> + <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> + <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>11</Statistics_hsp-len> + <Statistics_eff-space>64449</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Galaxy8-[blastn-short_EUginius_primers_probes.fasta_vs__EUginius_].blastxml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,412 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/opt/galaxy/blastdbs/EUginius_plasmid_insert</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def> + <BlastOutput_query-len>20</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_sc-match>1</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>L;m;</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|5</Hit_id> + <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> + <Hit_accession>5</Hit_accession> + <Hit_len>2457</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>40.14</Hsp_bit-score> + <Hsp_score>20</Hsp_score> + <Hsp_evalue>1.51296e-07</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2119</Hsp_hit-from> + <Hsp_hit-to>2138</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> + <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gnl|BL_ORD_ID|2</Hit_id> + <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> + <Hit_accession>2</Hit_accession> + <Hit_len>323</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>40.14</Hsp_bit-score> + <Hsp_score>20</Hsp_score> + <Hsp_evalue>1.51296e-07</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>200</Hsp_hit-from> + <Hsp_hit-to>219</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq> + <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>183300</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>183300</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|5</Hit_id> + <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def> + <Hit_accession>5</Hit_accession> + <Hit_len>2457</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>40.14</Hsp_bit-score> + <Hsp_score>20</Hsp_score> + <Hsp_evalue>1.51296e-07</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2143</Hsp_hit-from> + <Hsp_hit-to>2162</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gnl|BL_ORD_ID|2</Hit_id> + <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def> + <Hit_accession>2</Hit_accession> + <Hit_len>323</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>40.14</Hsp_bit-score> + <Hsp_score>20</Hsp_score> + <Hsp_evalue>1.51296e-07</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>224</Hsp_hit-from> + <Hsp_hit-to>243</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>20</Hsp_identity> + <Hsp_positive>20</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>20</Hsp_align-len> + <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gnl|BL_ORD_ID|1</Hit_id> + <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</Hit_def> + <Hit_accession>1</Hit_accession> + <Hit_len>1045</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>34.1929</Hsp_bit-score> + <Hsp_score>17</Hsp_score> + <Hsp_evalue>9.33411e-06</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>20</Hsp_query-to> + <Hsp_hit-from>2</Hsp_hit-from> + <Hsp_hit-to>18</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>17</Hsp_identity> + <Hsp_positive>17</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>17</Hsp_align-len> + <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq> + <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq> + <Hsp_midline>|||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>183300</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>24</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>229005</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>20</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>8</Statistics_hsp-len> + <Statistics_eff-space>183300</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>25</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|7</Hit_id> + <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> + <Hit_accession>7</Hit_accession> + <Hit_len>4983</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>36.1753</Hsp_bit-score> + <Hsp_score>18</Hsp_score> + <Hsp_evalue>3.14801e-06</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>22</Hsp_query-to> + <Hsp_hit-from>2344</Hsp_hit-from> + <Hsp_hit-to>2365</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>21</Hsp_identity> + <Hsp_positive>21</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>22</Hsp_align-len> + <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq> + <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq> + <Hsp_midline>|||||||||||||| |||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gnl|BL_ORD_ID|6</Hit_id> + <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> + <Hit_accession>6</Hit_accession> + <Hit_len>4180</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>36.1753</Hsp_bit-score> + <Hsp_score>18</Hsp_score> + <Hsp_evalue>3.14801e-06</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>22</Hsp_query-to> + <Hsp_hit-from>1541</Hsp_hit-from> + <Hsp_hit-to>1562</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>21</Hsp_identity> + <Hsp_positive>21</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>22</Hsp_align-len> + <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq> + <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq> + <Hsp_midline>|||||||||||||| |||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>9</Statistics_hsp-len> + <Statistics_eff-space>244272</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>Query_7</Iteration_query-ID> + <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def> + <Iteration_query-len>74</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|7</Hit_id> + <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def> + <Hit_accession>7</Hit_accession> + <Hit_len>4983</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>67.8929</Hsp_bit-score> + <Hsp_score>34</Hsp_score> + <Hsp_evalue>3.56369e-15</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>74</Hsp_query-to> + <Hsp_hit-from>2319</Hsp_hit-from> + <Hsp_hit-to>2392</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>64</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>74</Hsp_align-len> + <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> + <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> + <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gnl|BL_ORD_ID|6</Hit_id> + <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def> + <Hit_accession>6</Hit_accession> + <Hit_len>4180</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>67.8929</Hsp_bit-score> + <Hsp_score>34</Hsp_score> + <Hsp_evalue>3.56369e-15</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>74</Hsp_query-to> + <Hsp_hit-from>1516</Hsp_hit-from> + <Hsp_hit-to>1589</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>64</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>74</Hsp_align-len> + <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq> + <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq> + <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8</Statistics_db-num> + <Statistics_db-len>15339</Statistics_db-len> + <Statistics_hsp-len>10</Statistics_hsp-len> + <Statistics_eff-space>976576</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast xml example1.xml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,6548 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>pdb</BlastOutput_db> + <BlastOutput_query-ID>106397</BlastOutput_query-ID> + <BlastOutput_query-def>No definition line</BlastOutput_query-def> + <BlastOutput_query-len>16</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>1000</Parameters_expect> + <Parameters_sc-match>1</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>F</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>106397</Iteration_query-ID> + <Iteration_query-def>No definition line</Iteration_query-def> + <Iteration_query-len>16</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|557804730|pdb|3J5K|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)</Hit_def> + <Hit_accession>3J5K_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>2</Hit_num> + <Hit_id>gi|557804675|pdb|3J5I|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)</Hit_def> + <Hit_accession>3J5I_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>3</Hit_num> + <Hit_id>gi|557804619|pdb|3J5G|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)</Hit_def> + <Hit_accession>3J5G_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>4</Hit_num> + <Hit_id>gi|557804563|pdb|3J5E|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)</Hit_def> + <Hit_accession>3J5E_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>5</Hit_num> + <Hit_id>gi|557804507|pdb|3J5C|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)</Hit_def> + <Hit_accession>3J5C_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>6</Hit_num> + <Hit_id>gi|557804451|pdb|3J5A|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</Hit_def> + <Hit_accession>3J5A_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>7</Hit_num> + <Hit_id>gi|557804395|pdb|3J58|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</Hit_def> + <Hit_accession>3J58_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>8</Hit_num> + <Hit_id>gi|557804339|pdb|3J56|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</Hit_def> + <Hit_accession>3J56_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>9</Hit_num> + <Hit_id>gi|557804283|pdb|3J54|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</Hit_def> + <Hit_accession>3J54_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>10</Hit_num> + <Hit_id>gi|557804227|pdb|3J52|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</Hit_def> + <Hit_accession>3J52_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>11</Hit_num> + <Hit_id>gi|557804195|pdb|3J51|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</Hit_def> + <Hit_accession>3J51_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>12</Hit_num> + <Hit_id>gi|557804163|pdb|3J50|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</Hit_def> + <Hit_accession>3J50_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>13</Hit_num> + <Hit_id>gi|557804083|pdb|3J4X|A</Hit_id> + <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</Hit_def> + <Hit_accession>3J4X_A</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>14</Hit_num> + <Hit_id>gi|474452808|pdb|3J37|A</Hit_id> + <Hit_def>Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome</Hit_def> + <Hit_accession>3J37_A</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>15</Hit_num> + <Hit_id>gi|326634210|pdb|3IZT|B</Hit_id> + <Hit_def>Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. >gi|326634243|pdb|3IZU|B Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon >gi|380763703|pdb|3J0T|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class2 Of The Six Classes) >gi|380763785|pdb|3J0W|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4a Of The Six Classes) >gi|380763843|pdb|3J0Y|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4b Of The Six Classes) >gi|380763925|pdb|3J11|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 3 Of The Six Classes) >gi|380763959|pdb|3J12|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 5 Of The Six Classes) >gi|380764016|pdb|3J14|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 6 Of The Six Classes)</Hit_def> + <Hit_accession>3IZT_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>16</Hit_num> + <Hit_id>gi|224510767|pdb|3FIK|B</Hit_id> + <Hit_def>Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. >gi|257097373|pdb|3I1N|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097425|pdb|3I1P|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097479|pdb|3I1R|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097533|pdb|3I1T|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097588|pdb|3I20|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097643|pdb|3I22|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|294662251|pdb|2WWQ|B Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2). >gi|309320065|pdb|3OFC|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound. >gi|309320169|pdb|3OFZ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin. >gi|309320200|pdb|3OG0|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113654|pdb|3OAS|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113685|pdb|3OAT|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound. >gi|334359437|pdb|3R8S|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|334359468|pdb|3R8T|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|371927526|pdb|3SGF|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome >gi|371927651|pdb|3UOS|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) >gi|386783121|pdb|3J19|A Chain A, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb And Ef-G During Translocation And Mld-Loading (50s Subunit) >gi|567754995|pdb|3J5U|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna Structure, 50s Subunit) >gi|567755029|pdb|3J5W|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna*ef-g Structure, 50s Subunit)</Hit_def> + <Hit_accession>3FIK_B</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>17</Hit_num> + <Hit_id>gi|256032374|pdb|3E1B|B</Hit_id> + <Hit_def>Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State >gi|256032431|pdb|3E1D|B Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Post-Accommodation State</Hit_def> + <Hit_accession>3E1B_B</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>18</Hit_num> + <Hit_id>gi|157883716|pdb|2GYC|0</Hit_id> + <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143</Hit_def> + <Hit_accession>2GYC_0</Hit_accession> + <Hit_len>2740</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>889</Hsp_hit-from> + <Hsp_hit-to>904</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2453</Hsp_hit-from> + <Hsp_hit-to>2460</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>776</Hsp_hit-from> + <Hsp_hit-to>782</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1910</Hsp_hit-from> + <Hsp_hit-to>1916</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>19</Hit_num> + <Hit_id>gi|157883710|pdb|2GYA|0</Hit_id> + <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056</Hit_def> + <Hit_accession>2GYA_0</Hit_accession> + <Hit_len>2740</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>889</Hsp_hit-from> + <Hsp_hit-to>904</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2453</Hsp_hit-from> + <Hsp_hit-to>2460</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>776</Hsp_hit-from> + <Hsp_hit-to>782</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1910</Hsp_hit-from> + <Hsp_hit-to>1916</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>20</Hit_num> + <Hit_id>gi|122922257|pdb|2I2V|B</Hit_id> + <Hit_def>Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def> + <Hit_accession>2I2V_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>21</Hit_num> + <Hit_id>gi|83754062|pdb|2AW4|B</Hit_id> + <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|122922241|pdb|2I2T|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|157836046|pdb|2QOV|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836098|pdb|2QOX|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836150|pdb|2QOZ|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836202|pdb|2QP1|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|158429721|pdb|2QAM|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429773|pdb|2QAO|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429831|pdb|2QBA|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429883|pdb|2QBC|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429935|pdb|2QBE|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429988|pdb|2QBG|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430041|pdb|2QBI|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430094|pdb|2QBK|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431394|pdb|2Z4L|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431447|pdb|2Z4N|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|168988732|pdb|2VHM|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) >gi|168988763|pdb|2VHN|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) >gi|169404603|pdb|2RDO|B Chain B, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound >gi|197107301|pdb|3DF2|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|197107353|pdb|3DF4|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|290560329|pdb|3KCR|8 Chain 8, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4 >gi|308198729|pdb|3ORB|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101. >gi|308388007|pdb|3OFQ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|308388038|pdb|3OFR|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. >gi|309320096|pdb|3OFD|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|329666014|pdb|3J01|8 Chain 8, Structure Of The Ribosome-Secye Complex In The Membrane Environment >gi|402550607|pdb|4GAR|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|402550662|pdb|4GAU|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|524934273|pdb|4KIX|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934341|pdb|4KIZ|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934404|pdb|4KJ1|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934483|pdb|4KJ3|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934551|pdb|4KJ5|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934613|pdb|4KJ7|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934678|pdb|4KJ9|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934740|pdb|4KJB|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|564730763|pdb|3J5O|A Chain A, Visualization Of Two Trnas Trapped In Transit During Ef-g-mediated Translocation (50s Subunit) >gi|597959819|pdb|3J5L|A Chain A, Structure Of The E. Coli 50s Subunit With Ermbl Nascent Chain</Hit_def> + <Hit_accession>2AW4_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>22</Hit_num> + <Hit_id>gi|83754118|pdb|2AWB|B</Hit_id> + <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|126031747|pdb|2J28|B Chain B, Model Of E. Coli Srp Bound To 70s Rncs >gi|157880574|pdb|1VS8|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def> + <Hit_accession>2AWB_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>23</Hit_num> + <Hit_id>gi|157880571|pdb|1VS6|B</Hit_id> + <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|209870354|pdb|3BBX|B Chain B, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex >gi|222447037|pdb|3DG0|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Ef-G-Bound Translocation Complex >gi|222447039|pdb|3DG2|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of A Pretranslocation Complex >gi|222447041|pdb|3DG4|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf1-Bound Termination Complex >gi|222447043|pdb|3DG5|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf3-Bound Termination Complex >gi|308198355|pdb|1VT2|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome.</Hit_def> + <Hit_accession>1VS6_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>24</Hit_num> + <Hit_id>gi|33357900|pdb|1P85|0</Hit_id> + <Hit_def>Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome >gi|33357927|pdb|1P86|0 Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome</Hit_def> + <Hit_accession>1P85_0</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>32.2105</Hsp_bit-score> + <Hsp_score>16</Hsp_score> + <Hsp_evalue>0.000791334</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>976</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>16</Hsp_identity> + <Hsp_positive>16</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>16</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2591</Hsp_hit-from> + <Hsp_hit-to>2598</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2027</Hsp_hit-from> + <Hsp_hit-to>2033</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>25</Hit_num> + <Hit_id>gi|7767146|pdb|1C2W|B</Hit_id> + <Hit_def>Chain B, 23s Rrna Structure Fitted To A Cryo-Electron Microscopic Map At 7.5 Angstroms Resolution</Hit_def> + <Hit_accession>1C2W_B</Hit_accession> + <Hit_len>2904</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>26.2635</Hsp_bit-score> + <Hsp_score>13</Hsp_score> + <Hsp_evalue>0.0488207</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>961</Hsp_hit-from> + <Hsp_hit-to>973</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>13</Hsp_identity> + <Hsp_positive>13</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>13</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> + <Hsp_hseq>CGTCCGTCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>839</Hsp_hit-from> + <Hsp_hit-to>845</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCGTGAA</Hsp_qseq> + <Hsp_hseq>TCGTGAA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>26</Hit_num> + <Hit_id>gi|582044940|pdb|3J62|AA</Hit_id> + <Hit_def>Chain a, Model Of The Large Subunit Rna Based On A 5.5 A Cryo-em Map Of Triticum Aestivum Translating 80s Ribosome</Hit_def> + <Hit_accession>3J62_AA</Hit_accession> + <Hit_len>3391</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2961</Hsp_hit-from> + <Hsp_hit-to>2969</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>9</Hsp_query-to> + <Hsp_hit-from>177</Hsp_hit-from> + <Hsp_hit-to>170</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTCCGTCG</Hsp_qseq> + <Hsp_hseq>GTCCGTCG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>553</Hsp_hit-from> + <Hsp_hit-to>559</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>2</Hsp_query-from> + <Hsp_query-to>8</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2042</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCCGTC</Hsp_qseq> + <Hsp_hseq>GTCCGTC</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2211</Hsp_hit-from> + <Hsp_hit-to>2217</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>27</Hit_num> + <Hit_id>gi|567755268|pdb|4CE4|A</Hit_id> + <Hit_def>Chain A, 39s Large Subunit Of The Porcine Mitochondrial Ribosome</Hit_def> + <Hit_accession>4CE4_A</Hit_accession> + <Hit_len>1570</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1020</Hsp_hit-from> + <Hsp_hit-to>1028</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>28</Hit_num> + <Hit_id>gi|558704783|pdb|4BYP|5</Hit_id> + <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> + <Hit_accession>4BYP_5</Hit_accession> + <Hit_len>3396</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2959</Hsp_hit-from> + <Hsp_hit-to>2967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1634</Hsp_hit-from> + <Hsp_hit-to>1627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2435</Hsp_hit-from> + <Hsp_hit-to>2442</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1100</Hsp_hit-from> + <Hsp_hit-to>1106</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2216</Hsp_hit-from> + <Hsp_hit-to>2222</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>29</Hit_num> + <Hit_id>gi|558704825|pdb|4BYW|5</Hit_id> + <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> + <Hit_accession>4BYW_5</Hit_accession> + <Hit_len>3396</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2959</Hsp_hit-from> + <Hsp_hit-to>2967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1634</Hsp_hit-from> + <Hsp_hit-to>1627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2435</Hsp_hit-from> + <Hsp_hit-to>2442</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1100</Hsp_hit-from> + <Hsp_hit-to>1106</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2216</Hsp_hit-from> + <Hsp_hit-to>2222</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>30</Hit_num> + <Hit_id>gi|551701574|pdb|3J44|1</Hit_id> + <Hit_def>Chain 1, Structure Of The Methanococcus Jannaschii Ribosome-secyebeta Channel Complex (50s Ribosomal Subunit)</Hit_def> + <Hit_accession>3J44_1</Hit_accession> + <Hit_len>3049</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>651</Hsp_hit-from> + <Hsp_hit-to>663</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>12</Hsp_identity> + <Hsp_positive>12</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>13</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> + <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq> + <Hsp_midline>|||||||| ||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2705</Hsp_hit-from> + <Hsp_hit-to>2713</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>31</Hit_num> + <Hit_id>gi|508123724|pdb|4HUB|0</Hit_id> + <Hit_def>Chain 0, The Re-refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution: More Complete Structure Of The L7/l12 And L1 Stalk, L5 And Lx Proteins</Hit_def> + <Hit_accession>4HUB_0</Hit_accession> + <Hit_len>2910</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>298</Hsp_hit-from> + <Hsp_hit-to>290</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2618</Hsp_hit-from> + <Hsp_hit-to>2626</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2599</Hsp_hit-from> + <Hsp_hit-to>2605</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>32</Hit_num> + <Hit_id>gi|485601478|pdb|3J3F|5</Hit_id> + <Hit_def>Chain 5, Structure Of The H. Sapiens 60s Rrna</Hit_def> + <Hit_accession>3J3F_5</Hit_accession> + <Hit_len>5070</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>4536</Hsp_hit-from> + <Hsp_hit-to>4544</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>8</Hsp_query-to> + <Hsp_hit-from>765</Hsp_hit-from> + <Hsp_hit-to>772</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCCGTC</Hsp_qseq> + <Hsp_hseq>CGTCCGTC</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>8</Hsp_query-to> + <Hsp_hit-from>769</Hsp_hit-from> + <Hsp_hit-to>776</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCCGTC</Hsp_qseq> + <Hsp_hseq>CGTCCGTC</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>8</Hsp_query-to> + <Hsp_hit-from>773</Hsp_hit-from> + <Hsp_hit-to>780</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCCGTC</Hsp_qseq> + <Hsp_hseq>CGTCCGTC</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>8</Hsp_query-to> + <Hsp_hit-from>777</Hsp_hit-from> + <Hsp_hit-to>784</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCCGTC</Hsp_qseq> + <Hsp_hseq>CGTCCGTC</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>6</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>3939</Hsp_hit-from> + <Hsp_hit-to>3946</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>7</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>393</Hsp_hit-from> + <Hsp_hit-to>399</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>8</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>3720</Hsp_hit-from> + <Hsp_hit-to>3726</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>33</Hit_num> + <Hit_id>gi|485601474|pdb|3J3E|5</Hit_id> + <Hit_def>Chain 5, Structure Of The D. Melanogaster 60s Rrna</Hit_def> + <Hit_accession>3J3E_5</Hit_accession> + <Hit_len>3970</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>3490</Hsp_hit-from> + <Hsp_hit-to>3498</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2177</Hsp_hit-from> + <Hsp_hit-to>2184</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2594</Hsp_hit-from> + <Hsp_hit-to>2600</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>7</Hsp_query-to> + <Hsp_hit-from>3627</Hsp_hit-from> + <Hsp_hit-to>3633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CGTCCGT</Hsp_qseq> + <Hsp_hseq>CGTCCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>34</Hit_num> + <Hit_id>gi|449802187|pdb|3ZEX|B</Hit_id> + <Hit_def>Chain B, High_resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome</Hit_def> + <Hit_accession>3ZEX_B</Hit_accession> + <Hit_len>1465</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>1334</Hsp_hit-from> + <Hsp_hit-to>1342</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>705</Hsp_hit-from> + <Hsp_hit-to>711</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>35</Hit_num> + <Hit_id>gi|428697991|pdb|3J2L|1</Hit_id> + <Hit_def>Chain 1, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Rna)</Hit_def> + <Hit_accession>3J2L_1</Hit_accession> + <Hit_len>3049</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>13</Hsp_query-to> + <Hsp_hit-from>651</Hsp_hit-from> + <Hsp_hit-to>663</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>12</Hsp_identity> + <Hsp_positive>12</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>13</Hsp_align-len> + <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq> + <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq> + <Hsp_midline>|||||||| ||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2705</Hsp_hit-from> + <Hsp_hit-to>2713</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>36</Hit_num> + <Hit_id>gi|392311504|pdb|3OW2|0</Hit_id> + <Hit_def>Chain 0, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit</Hit_def> + <Hit_accession>3OW2_0</Hit_accession> + <Hit_len>2902</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2613</Hsp_hit-from> + <Hsp_hit-to>2621</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2594</Hsp_hit-from> + <Hsp_hit-to>2600</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>37</Hit_num> + <Hit_id>gi|374977932|pdb|4ADX|0</Hit_id> + <Hit_def>Chain 0, The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6</Hit_def> + <Hit_accession>4ADX_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>38</Hit_num> + <Hit_id>gi|364506133|pdb|3U5F|6</Hit_id> + <Hit_def>Chain 6, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome B</Hit_def> + <Hit_accession>3U5F_6</Hit_accession> + <Hit_len>1800</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1528</Hsp_hit-from> + <Hsp_hit-to>1536</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>1006</Hsp_hit-from> + <Hsp_hit-to>1012</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1569</Hsp_hit-from> + <Hsp_hit-to>1563</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>39</Hit_num> + <Hit_id>gi|364506095|pdb|3U5B|2</Hit_id> + <Hit_def>Chain 2, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome A >gi|558704782|pdb|4BYO|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex >gi|558704824|pdb|4BYV|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def> + <Hit_accession>3U5B_2</Hit_accession> + <Hit_len>1800</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1528</Hsp_hit-from> + <Hsp_hit-to>1536</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>1006</Hsp_hit-from> + <Hsp_hit-to>1012</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1569</Hsp_hit-from> + <Hsp_hit-to>1563</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>40</Hit_num> + <Hit_id>gi|358440203|pdb|4A1D|1</Hit_id> + <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4.</Hit_def> + <Hit_accession>4A1D_1</Hit_accession> + <Hit_len>3119</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2280</Hsp_hit-from> + <Hsp_hit-to>2288</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2714</Hsp_hit-from> + <Hsp_hit-to>2722</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>14</Hsp_query-to> + <Hsp_hit-from>2838</Hsp_hit-from> + <Hsp_hit-to>2844</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CGTGAAG</Hsp_qseq> + <Hsp_hseq>CGTGAAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>41</Hit_num> + <Hit_id>gi|358440111|pdb|4A18|1</Hit_id> + <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1</Hit_def> + <Hit_accession>4A18_1</Hit_accession> + <Hit_len>3354</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2513</Hsp_hit-from> + <Hsp_hit-to>2521</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2947</Hsp_hit-from> + <Hsp_hit-to>2955</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>14</Hsp_query-to> + <Hsp_hit-from>3071</Hsp_hit-from> + <Hsp_hit-to>3077</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CGTGAAG</Hsp_qseq> + <Hsp_hseq>CGTGAAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>42</Hit_num> + <Hit_id>gi|358440157|pdb|4A1B|1</Hit_id> + <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3. >gi|359807703|pdb|4A19|1 Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 2.</Hit_def> + <Hit_accession>4A1B_1</Hit_accession> + <Hit_len>3354</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2513</Hsp_hit-from> + <Hsp_hit-to>2521</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2947</Hsp_hit-from> + <Hsp_hit-to>2955</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>14</Hsp_query-to> + <Hsp_hit-from>3071</Hsp_hit-from> + <Hsp_hit-to>3077</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CGTGAAG</Hsp_qseq> + <Hsp_hseq>CGTGAAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>43</Hit_num> + <Hit_id>gi|357380452|pdb|3J0L|8</Hit_id> + <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1</Hit_def> + <Hit_accession>3J0L_8</Hit_accession> + <Hit_len>20</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>11</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>44</Hit_num> + <Hit_id>gi|357380483|pdb|3J0O|8</Hit_id> + <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</Hit_def> + <Hit_accession>3J0O_8</Hit_accession> + <Hit_len>20</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>3</Hsp_hit-from> + <Hsp_hit-to>11</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>45</Hit_num> + <Hit_id>gi|315113523|pdb|3O58|1</Hit_id> + <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. >gi|418837761|pdb|4B6B|5 Chain 5, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex With Arx1 And Rei1 >gi|597959861|pdb|3J64|1 Chain 1, Arx1 Pre-60s Particle. This Entry Contains The Rrna.</Hit_def> + <Hit_accession>3O58_1</Hit_accession> + <Hit_len>3396</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2959</Hsp_hit-from> + <Hsp_hit-to>2967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1634</Hsp_hit-from> + <Hsp_hit-to>1627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2435</Hsp_hit-from> + <Hsp_hit-to>2442</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1100</Hsp_hit-from> + <Hsp_hit-to>1106</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2216</Hsp_hit-from> + <Hsp_hit-to>2222</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>46</Hit_num> + <Hit_id>gi|315113568|pdb|3O5H|1</Hit_id> + <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit. >gi|364506130|pdb|3U5D|1 Chain 1, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome A >gi|364506168|pdb|3U5H|5 Chain 5, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome B</Hit_def> + <Hit_accession>3O5H_1</Hit_accession> + <Hit_len>3396</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2959</Hsp_hit-from> + <Hsp_hit-to>2967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1634</Hsp_hit-from> + <Hsp_hit-to>1627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2435</Hsp_hit-from> + <Hsp_hit-to>2442</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1100</Hsp_hit-from> + <Hsp_hit-to>1106</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2216</Hsp_hit-from> + <Hsp_hit-to>2222</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>47</Hit_num> + <Hit_id>gi|315113447|pdb|3O2Z|1</Hit_id> + <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit.</Hit_def> + <Hit_accession>3O2Z_1</Hit_accession> + <Hit_len>1800</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1528</Hsp_hit-from> + <Hsp_hit-to>1536</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>1006</Hsp_hit-from> + <Hsp_hit-to>1012</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1569</Hsp_hit-from> + <Hsp_hit-to>1563</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>48</Hit_num> + <Hit_id>gi|315113475|pdb|3O30|1</Hit_id> + <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit.</Hit_def> + <Hit_accession>3O30_1</Hit_accession> + <Hit_len>1800</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1528</Hsp_hit-from> + <Hsp_hit-to>1536</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>1006</Hsp_hit-from> + <Hsp_hit-to>1012</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1569</Hsp_hit-from> + <Hsp_hit-to>1563</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>49</Hit_num> + <Hit_id>gi|313103747|pdb|3IZF|A</Hit_id> + <Hit_def>Chain A, Model Of The Large Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome (With Es27l-In Conformation)</Hit_def> + <Hit_accession>3IZF_A</Hit_accession> + <Hit_len>3396</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2959</Hsp_hit-from> + <Hsp_hit-to>2967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1634</Hsp_hit-from> + <Hsp_hit-to>1627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2435</Hsp_hit-from> + <Hsp_hit-to>2442</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1100</Hsp_hit-from> + <Hsp_hit-to>1106</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2216</Hsp_hit-from> + <Hsp_hit-to>2222</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>50</Hit_num> + <Hit_id>gi|313103744|pdb|3IZE|A</Hit_id> + <Hit_def>Chain A, Model Of The Small Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome</Hit_def> + <Hit_accession>3IZE_A</Hit_accession> + <Hit_len>1800</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1528</Hsp_hit-from> + <Hsp_hit-to>1536</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>1006</Hsp_hit-from> + <Hsp_hit-to>1012</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1569</Hsp_hit-from> + <Hsp_hit-to>1563</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>51</Hit_num> + <Hit_id>gi|296278448|pdb|3KO2|I</Hit_id> + <Hit_def>Chain I, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> + <Hit_accession>3KO2_I</Hit_accession> + <Hit_len>24</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>19</Hsp_hit-from> + <Hsp_hit-to>11</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>52</Hit_num> + <Hit_id>gi|296278447|pdb|3KO2|H</Hit_id> + <Hit_def>Chain H, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> + <Hit_accession>3KO2_H</Hit_accession> + <Hit_len>24</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>6</Hsp_hit-from> + <Hsp_hit-to>14</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>53</Hit_num> + <Hit_id>gi|296278444|pdb|3KO2|D</Hit_id> + <Hit_def>Chain D, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> + <Hit_accession>3KO2_D</Hit_accession> + <Hit_len>24</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>19</Hsp_hit-from> + <Hsp_hit-to>11</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>54</Hit_num> + <Hit_id>gi|296278443|pdb|3KO2|C</Hit_id> + <Hit_def>Chain C, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def> + <Hit_accession>3KO2_C</Hit_accession> + <Hit_len>24</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>6</Hsp_hit-from> + <Hsp_hit-to>14</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>55</Hit_num> + <Hit_id>gi|290790096|pdb|3I56|0</Hit_id> + <Hit_def>Chain 0, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit</Hit_def> + <Hit_accession>3I56_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>56</Hit_num> + <Hit_id>gi|281500859|pdb|3JYX|5</Hit_id> + <Hit_def>Chain 5, Structure Of The 60s Rrna For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def> + <Hit_accession>3JYX_5</Hit_accession> + <Hit_len>3170</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2740</Hsp_hit-from> + <Hsp_hit-to>2748</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1587</Hsp_hit-from> + <Hsp_hit-to>1580</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2222</Hsp_hit-from> + <Hsp_hit-to>2229</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>1344</Hsp_hit-from> + <Hsp_hit-to>1350</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2003</Hsp_hit-from> + <Hsp_hit-to>2009</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>57</Hit_num> + <Hit_id>gi|281500807|pdb|3JYV|A</Hit_id> + <Hit_def>Chain A, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def> + <Hit_accession>3JYV_A</Hit_accession> + <Hit_len>1761</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>11</Hsp_query-to> + <Hsp_hit-from>1492</Hsp_hit-from> + <Hsp_hit-to>1500</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCCGTCGTG</Hsp_qseq> + <Hsp_hseq>TCCGTCGTG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>981</Hsp_hit-from> + <Hsp_hit-to>987</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1533</Hsp_hit-from> + <Hsp_hit-to>1527</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>58</Hit_num> + <Hit_id>gi|259090425|pdb|1S1I|3</Hit_id> + <Hit_def>Chain 3, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h.</Hit_def> + <Hit_accession>1S1I_3</Hit_accession> + <Hit_len>2999</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2710</Hsp_hit-from> + <Hsp_hit-to>2718</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2691</Hsp_hit-from> + <Hsp_hit-to>2697</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>59</Hit_num> + <Hit_id>gi|208435493|pdb|2QEX|0</Hit_id> + <Hit_def>Chain 0, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit</Hit_def> + <Hit_accession>2QEX_0</Hit_accession> + <Hit_len>2772</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2476</Hsp_hit-from> + <Hsp_hit-to>2484</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2457</Hsp_hit-from> + <Hsp_hit-to>2463</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>60</Hit_num> + <Hit_id>gi|194368703|pdb|3CPW|0</Hit_id> + <Hit_def>Chain 0, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> + <Hit_accession>3CPW_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>61</Hit_num> + <Hit_id>gi|188596372|pdb|3CCV|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a >gi|188596403|pdb|3CD6|0 Chain 0, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With Cc-puromycin</Hit_def> + <Hit_accession>3CCV_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>62</Hit_num> + <Hit_id>gi|188596341|pdb|3CCU|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c</Hit_def> + <Hit_accession>3CCU_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>63</Hit_num> + <Hit_id>gi|188596310|pdb|3CCS|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a</Hit_def> + <Hit_accession>3CCS_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>64</Hit_num> + <Hit_id>gi|188596279|pdb|3CCR|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.</Hit_def> + <Hit_accession>3CCR_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>65</Hit_num> + <Hit_id>gi|188596248|pdb|3CCQ|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u</Hit_def> + <Hit_accession>3CCQ_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>66</Hit_num> + <Hit_id>gi|188596217|pdb|3CCM|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u</Hit_def> + <Hit_accession>3CCM_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>67</Hit_num> + <Hit_id>gi|188596186|pdb|3CCL|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.</Hit_def> + <Hit_accession>3CCL_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>68</Hit_num> + <Hit_id>gi|188596155|pdb|3CCJ|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u</Hit_def> + <Hit_accession>3CCJ_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>69</Hit_num> + <Hit_id>gi|188596124|pdb|3CCE|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a</Hit_def> + <Hit_accession>3CCE_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>70</Hit_num> + <Hit_id>gi|188596093|pdb|3CC7|0</Hit_id> + <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u</Hit_def> + <Hit_accession>3CC7_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>71</Hit_num> + <Hit_id>gi|188596031|pdb|3CC2|0</Hit_id> + <Hit_def>Chain 0, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins >gi|188596062|pdb|3CC4|0 Chain 0, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|206581937|pdb|3CMA|0 Chain 0, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|206581970|pdb|3CME|0 Chain 0, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|228312141|pdb|3G4S|0 Chain 0, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit >gi|228312197|pdb|3G6E|0 Chain 0, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit >gi|228312233|pdb|3G71|0 Chain 0, Co-crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit >gi|290790035|pdb|3I55|0 Chain 0, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit</Hit_def> + <Hit_accession>3CC2_0</Hit_accession> + <Hit_len>2923</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>72</Hit_num> + <Hit_id>gi|187609272|pdb|2ZKR|0</Hit_id> + <Hit_def>Chain 0, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map</Hit_def> + <Hit_accession>2ZKR_0</Hit_accession> + <Hit_len>2903</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2623</Hsp_hit-from> + <Hsp_hit-to>2631</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>2111</Hsp_hit-from> + <Hsp_hit-to>2118</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>GTGAAGAG</Hsp_qseq> + <Hsp_hseq>GTGAAGAG</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>353</Hsp_hit-from> + <Hsp_hit-to>359</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1892</Hsp_hit-from> + <Hsp_hit-to>1898</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>73</Hit_num> + <Hit_id>gi|171848835|pdb|2QA4|0</Hit_id> + <Hit_def>Chain 0, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit</Hit_def> + <Hit_accession>2QA4_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>74</Hit_num> + <Hit_id>gi|99032306|pdb|2FTC|R</Hit_id> + <Hit_def>Chain R, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome</Hit_def> + <Hit_accession>2FTC_R</Hit_accession> + <Hit_len>1568</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>1032</Hsp_hit-from> + <Hsp_hit-to>1040</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CGTGAAGAG</Hsp_qseq> + <Hsp_hseq>CGTGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>75</Hit_num> + <Hit_id>gi|50513468|pdb|1S72|0</Hit_id> + <Hit_def>Chain 0, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|83753123|pdb|1VQ4|0 Chain 0, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753155|pdb|1VQ5|0 Chain 0, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753187|pdb|1VQ6|0 Chain 0, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753219|pdb|1VQ7|0 Chain 0, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753251|pdb|1VQ8|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753282|pdb|1VQ9|0 Chain 0, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753314|pdb|1VQK|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui >gi|83753345|pdb|1VQL|0 Chain 0, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753376|pdb|1VQM|0 Chain 0, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753407|pdb|1VQN|0 Chain 0, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753439|pdb|1VQO|0 Chain 0, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui >gi|83753470|pdb|1VQP|0 Chain 0, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|145580171|pdb|2OTJ|0 Chain 0, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui >gi|145580202|pdb|2OTL|0 Chain 0, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui</Hit_def> + <Hit_accession>1S72_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>76</Hit_num> + <Hit_id>gi|66360881|pdb|1YIT|0</Hit_id> + <Hit_def>Chain 0, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360914|pdb|1YJ9|0 Chain 0, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22</Hit_def> + <Hit_accession>1YIT_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>77</Hit_num> + <Hit_id>gi|66360782|pdb|1YHQ|0</Hit_id> + <Hit_def>Chain 0, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360815|pdb|1YI2|0 Chain 0, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360848|pdb|1YIJ|0 Chain 0, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360947|pdb|1YJN|0 Chain 0, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> + <Hit_accession>1YHQ_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>78</Hit_num> + <Hit_id>gi|66360980|pdb|1YJW|0</Hit_id> + <Hit_def>Chain 0, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def> + <Hit_accession>1YJW_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>7</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>305</Hsp_hit-from> + <Hsp_hit-to>297</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>TCGTGAAGA</Hsp_qseq> + <Hsp_hseq>TCGTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2625</Hsp_hit-from> + <Hsp_hit-to>2633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2606</Hsp_hit-from> + <Hsp_hit-to>2612</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>79</Hit_num> + <Hit_id>gi|37928006|pdb|1Q86|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.</Hit_def> + <Hit_accession>1Q86_A</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>80</Hit_num> + <Hit_id>gi|15825941|pdb|1JJ2|0</Hit_id> + <Hit_def>Chain 0, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|20150986|pdb|1KQS|0 Chain 0, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis >gi|22219324|pdb|1M1K|A Chain A, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|24159019|pdb|1M90|A Chain A, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit >gi|34811116|pdb|1K73|A Chain A, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|34811185|pdb|1N8R|A Chain A, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M >gi|34811215|pdb|1NJI|A Chain A, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit >gi|37927899|pdb|1Q7Y|A Chain A, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit >gi|37927934|pdb|1Q81|A Chain A, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. >gi|37927970|pdb|1Q82|A Chain A, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit >gi|39654670|pdb|1QVF|0 Chain 0, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|39654701|pdb|1QVG|0 Chain 0, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|157878615|pdb|1K8A|A Chain A, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878625|pdb|1K9M|A Chain A, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878639|pdb|1KD1|A Chain A, Co-crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157880605|pdb|1W2B|0 Chain 0, Trigger Factor Ribosome Binding Domain In Complex With 50s >gi|228311909|pdb|3CXC|0 Chain 0, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui</Hit_def> + <Hit_accession>1JJ2_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>81</Hit_num> + <Hit_id>gi|34811146|pdb|1KC8|A</Hit_id> + <Hit_def>Chain A, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit</Hit_def> + <Hit_accession>1KC8_A</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>82</Hit_num> + <Hit_id>gi|10120918|pdb|1FFK|0</Hit_id> + <Hit_def>Chain 0, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution</Hit_def> + <Hit_accession>1FFK_0</Hit_accession> + <Hit_len>2922</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2624</Hsp_hit-from> + <Hsp_hit-to>2632</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2605</Hsp_hit-from> + <Hsp_hit-to>2611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>83</Hit_num> + <Hit_id>gi|10120728|pdb|1FG0|A</Hit_id> + <Hit_def>Chain A, Large Ribosomal Subunit Complexed With A 13 Bp Minihelix- Puromycin Compound</Hit_def> + <Hit_accession>1FG0_A</Hit_accession> + <Hit_len>602</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>563</Hsp_hit-from> + <Hsp_hit-to>571</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>544</Hsp_hit-from> + <Hsp_hit-to>550</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>84</Hit_num> + <Hit_id>gi|10120727|pdb|1FFZ|A</Hit_id> + <Hit_def>Chain A, Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin</Hit_def> + <Hit_accession>1FFZ_A</Hit_accession> + <Hit_len>602</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>18.3341</Hsp_bit-score> + <Hsp_score>9</Hsp_score> + <Hsp_evalue>11.9013</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>563</Hsp_hit-from> + <Hsp_hit-to>571</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>9</Hsp_identity> + <Hsp_positive>9</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>9</Hsp_align-len> + <Hsp_qseq>CCGTCGTGA</Hsp_qseq> + <Hsp_hseq>CCGTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>6</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>544</Hsp_hit-from> + <Hsp_hit-to>550</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTCGTGA</Hsp_qseq> + <Hsp_hseq>GTCGTGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>85</Hit_num> + <Hit_id>gi|558705015|pdb|4LGT|F</Hit_id> + <Hit_def>Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def> + <Hit_accession>4LGT_F</Hit_accession> + <Hit_len>21</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>5</Hsp_hit-from> + <Hsp_hit-to>12</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>86</Hit_num> + <Hit_id>gi|558705013|pdb|4LGT|E</Hit_id> + <Hit_def>Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def> + <Hit_accession>4LGT_E</Hit_accession> + <Hit_len>21</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>5</Hsp_hit-from> + <Hsp_hit-to>12</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>87</Hit_num> + <Hit_id>gi|529280935|pdb|4BTD|A</Hit_id> + <Hit_def>Chain A, Thermus Thermophilus Ribosome</Hit_def> + <Hit_accession>4BTD_A</Hit_accession> + <Hit_len>2915</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2055</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2603</Hsp_hit-from> + <Hsp_hit-to>2610</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>88</Hit_num> + <Hit_id>gi|528082310|pdb|4L6J|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The First 70s Ribosome. >gi|528082364|pdb|4L6L|A Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The Second 70s Ribosome</Hit_def> + <Hit_accession>4L6J_A</Hit_accession> + <Hit_len>2879</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2021</Hsp_hit-from> + <Hsp_hit-to>2028</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2576</Hsp_hit-from> + <Hsp_hit-to>2583</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>89</Hit_num> + <Hit_id>gi|520729408|pdb|4KFI|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The A Subunit >gi|520729463|pdb|4KFL|A Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The B Subunit</Hit_def> + <Hit_accession>4KFI_A</Hit_accession> + <Hit_len>2879</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2021</Hsp_hit-from> + <Hsp_hit-to>2028</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2576</Hsp_hit-from> + <Hsp_hit-to>2583</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>90</Hit_num> + <Hit_id>gi|520728860|pdb|4K0Q|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def> + <Hit_accession>4K0Q_A</Hit_accession> + <Hit_len>2915</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2055</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2603</Hsp_hit-from> + <Hsp_hit-to>2610</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>91</Hit_num> + <Hit_id>gi|520728802|pdb|4K0M|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def> + <Hit_accession>4K0M_A</Hit_accession> + <Hit_len>2915</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2055</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2603</Hsp_hit-from> + <Hsp_hit-to>2610</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>92</Hit_num> + <Hit_id>gi|512125286|pdb|3J3V|A</Hit_id> + <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state I-a)</Hit_def> + <Hit_accession>3J3V_A</Hit_accession> + <Hit_len>2927</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2620</Hsp_hit-from> + <Hsp_hit-to>2627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>340</Hsp_hit-from> + <Hsp_hit-to>346</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>9</Hsp_query-to> + <Hsp_hit-from>440</Hsp_hit-from> + <Hsp_hit-to>446</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCCGTCG</Hsp_qseq> + <Hsp_hseq>TCCGTCG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2056</Hsp_hit-from> + <Hsp_hit-to>2062</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>9</Hsp_query-to> + <Hsp_hit-from>2644</Hsp_hit-from> + <Hsp_hit-to>2650</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCCGTCG</Hsp_qseq> + <Hsp_hseq>TCCGTCG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>93</Hit_num> + <Hit_id>gi|512125306|pdb|3J3W|A</Hit_id> + <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state Ii-a)</Hit_def> + <Hit_accession>3J3W_A</Hit_accession> + <Hit_len>2927</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2620</Hsp_hit-from> + <Hsp_hit-to>2627</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>10</Hsp_query-from> + <Hsp_query-to>16</Hsp_query-to> + <Hsp_hit-from>340</Hsp_hit-from> + <Hsp_hit-to>346</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TGAAGAG</Hsp_qseq> + <Hsp_hseq>TGAAGAG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>9</Hsp_query-to> + <Hsp_hit-from>440</Hsp_hit-from> + <Hsp_hit-to>446</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCCGTCG</Hsp_qseq> + <Hsp_hseq>TCCGTCG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>9</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2056</Hsp_hit-from> + <Hsp_hit-to>2062</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>GTGAAGA</Hsp_qseq> + <Hsp_hseq>GTGAAGA</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>3</Hsp_query-from> + <Hsp_query-to>9</Hsp_query-to> + <Hsp_hit-from>2644</Hsp_hit-from> + <Hsp_hit-to>2650</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>TCCGTCG</Hsp_qseq> + <Hsp_hseq>TCCGTCG</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>94</Hit_num> + <Hit_id>gi|482676744|pdb|3V6X|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit</Hit_def> + <Hit_accession>3V6X_A</Hit_accession> + <Hit_len>2916</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2055</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2603</Hsp_hit-from> + <Hsp_hit-to>2610</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>95</Hit_num> + <Hit_id>gi|482676712|pdb|3V6W|A</Hit_id> + <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit</Hit_def> + <Hit_accession>3V6W_A</Hit_accession> + <Hit_len>2916</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>2048</Hsp_hit-from> + <Hsp_hit-to>2055</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2603</Hsp_hit-from> + <Hsp_hit-to>2610</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>96</Hit_num> + <Hit_id>gi|428697829|pdb|2YMI|DD</Hit_id> + <Hit_def>Chain d, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def> + <Hit_accession>2YMI_DD</Hit_accession> + <Hit_len>56</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>52</Hsp_hit-from> + <Hsp_hit-to>45</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>97</Hit_num> + <Hit_id>gi|428697789|pdb|2YMF|A</Hit_id> + <Hit_def>Chain A, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def> + <Hit_accession>2YMF_A</Hit_accession> + <Hit_len>4896</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>575</Hsp_hit-from> + <Hsp_hit-to>582</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>14.3694</Hsp_bit-score> + <Hsp_score>7</Hsp_score> + <Hsp_evalue>185.82</Hsp_evalue> + <Hsp_query-from>4</Hsp_query-from> + <Hsp_query-to>10</Hsp_query-to> + <Hsp_hit-from>561</Hsp_hit-from> + <Hsp_hit-to>567</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>7</Hsp_identity> + <Hsp_positive>7</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>7</Hsp_align-len> + <Hsp_qseq>CCGTCGT</Hsp_qseq> + <Hsp_hseq>CCGTCGT</Hsp_hseq> + <Hsp_midline>|||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>98</Hit_num> + <Hit_id>gi|396639330|pdb|2J01|A</Hit_id> + <Hit_def>Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. >gi|396639355|pdb|2J03|A Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii.</Hit_def> + <Hit_accession>2J01_A</Hit_accession> + <Hit_len>2787</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>8</Hsp_query-from> + <Hsp_query-to>15</Hsp_query-to> + <Hsp_hit-from>1948</Hsp_hit-from> + <Hsp_hit-to>1955</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTGAAGA</Hsp_qseq> + <Hsp_hseq>CGTGAAGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>2474</Hsp_hit-from> + <Hsp_hit-to>2481</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>99</Hit_num> + <Hit_id>gi|393715375|pdb|4AQX|C</Hit_id> + <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Magnesium</Hit_def> + <Hit_accession>4AQX_C</Hit_accession> + <Hit_len>14</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>7</Hsp_hit-from> + <Hsp_hit-to>14</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +<Hit> + <Hit_num>100</Hit_num> + <Hit_id>gi|393715371|pdb|4AQU|C</Hit_id> + <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium</Hit_def> + <Hit_accession>4AQU_C</Hit_accession> + <Hit_len>24</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>16.3517</Hsp_bit-score> + <Hsp_score>8</Hsp_score> + <Hsp_evalue>47.0266</Hsp_evalue> + <Hsp_query-from>5</Hsp_query-from> + <Hsp_query-to>12</Hsp_query-to> + <Hsp_hit-from>7</Hsp_hit-from> + <Hsp_hit-to>14</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>8</Hsp_identity> + <Hsp_positive>8</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>8</Hsp_align-len> + <Hsp_qseq>CGTCGTGA</Hsp_qseq> + <Hsp_hseq>CGTCGTGA</Hsp_hseq> + <Hsp_midline>||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>8975</Statistics_db-num> + <Statistics_db-len>885284</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.710602795216363</Statistics_kappa> + <Statistics_lambda>1.37406312246009</Statistics_lambda> + <Statistics_entropy>1.30724660390929</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast xml example2.xml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,44 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>No definition line</BlastOutput_query-def> + <BlastOutput_query-len>16</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_sc-match>2</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>L;m;</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>No definition line</Iteration_query-def> + <Iteration_query-len>16</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>28813188</Statistics_db-num> + <Statistics_db-len>53027764389</Statistics_db-len> + <Statistics_hsp-len>13</Statistics_hsp-len> + <Statistics_eff-space>157959578835</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,35 @@ +<tool id="blast2html" name="blast2html" version="0.0.1"> + + <description>Convert BLAST XML to HTML</description> + + <requirements> + <requirement type="python-module">jinja2</requirement> + <requirement type="python-module">lxml</requirement> + </requirements> + + <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> + + <inputs> + <param format="blast" name="input" type="data" label="Source file"/> + </inputs> + + <outputs> + <data format="html" name="output" /> + </outputs> + + <tests> + <test> + <param name="input" value="blast-view_test1_in.xml"/> + <output name="out_file1" file="blast-view_test1_out.html"/> + </test> + <test> + <param name="input" value="blast-view_test2_in.xml"/> + <output name="out_file1" file="blast-view_test2_out.html"/> + </test> + </tests> + + <help> + This tool converts the default BLAST XML result into a HTML document + </help> + +</tool>